☰

Lawrence David - Publications

Affiliations: 
Duke University, Durham, NC 
Tree Info Similar researchers PubMed Report error

15/58 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Villa MM, Bloom RJ, Silverman JD, Durand HK, Jiang S, Wu A, Dallow EP, Huang S, You L, David LA. Interindividual Variation in Dietary Carbohydrate Metabolism by Gut Bacteria Revealed with Droplet Microfluidic Culture. Msystems. 5. PMID 32606031 DOI: 10.1128/mSystems.00864-19  0.302
2019 Reese AT, Kartzinel TR, Petrone BL, Turnbaugh PJ, Pringle RM, David LA. Using DNA Metabarcoding To Evaluate the Plant Component of Human Diets: a Proof of Concept. Msystems. 4. PMID 31594830 DOI: 10.1128/mSystems.00458-19  0.563
2018 Reese AT, Pereira FC, Schintlmeister A, Berry D, Wagner M, Hale LP, Wu A, Jiang S, Durand HK, Zhou X, Premont RT, Diehl AM, O'Connell TM, Alberts SC, Kartzinel TR, ... ... David LA, et al. Microbial nitrogen limitation in the mammalian large intestine. Nature Microbiology. PMID 30374168 DOI: 10.1038/S41564-018-0267-7  0.333
2018 Reese AT, Cho EH, Klitzman B, Nichols SP, Wisniewski NA, Villa MM, Durand HK, Jiang S, Midani FS, Nimmagadda SN, O'Connell TM, Wright JP, Deshusses MA, David LA. Antibiotic-induced changes in the microbiota disrupt redox dynamics in the gut. Elife. 7. PMID 29916366 DOI: 10.7554/Elife.35987  0.318
2016 David LA, Materna AC, Friedman J, Baptista MI, Blackburn MC, Perrotta A, Erdman SE, Alm EJ. Erratum to: Host lifestyle affects human microbiota on daily timescales. Genome Biology. 17: 117. PMID 27246704 DOI: 10.1186/S13059-016-0988-Y  0.452
2015 Wong S, Stephens WZ, Burns AR, Stagaman K, David LA, Bohannan BJ, Guillemin K, Rawls JF. Ontogenetic Differences in Dietary Fat Influence Microbiota Assembly in the Zebrafish Gut. Mbio. 6: e00687-15. PMID 26419876 DOI: 10.1128/Mbio.00687-15  0.36
2015 David LA, Weil A, Ryan ET, Calderwood SB, Harris JB, Chowdhury F, Begum Y, Qadri F, LaRocque RC, Turnbaugh PJ. Gut microbial succession follows acute secretory diarrhea in humans. Mbio. 6: e00381-15. PMID 25991682 DOI: 10.1128/Mbio.00381-15  0.6
2014 David LA, Materna AC, Friedman J, Campos-Baptista MI, Blackburn MC, Perrotta A, Erdman SE, Alm EJ. Host lifestyle affects human microbiota on daily timescales. Genome Biology. 15: R89. PMID 25146375 DOI: 10.1186/Gb-2014-15-7-R89  0.56
2014 David LA, Maurice CF, Carmody RN, Gootenberg DB, Button JE, Wolfe BE, Ling AV, Devlin AS, Varma Y, Fischbach MA, Biddinger SB, Dutton RJ, Turnbaugh PJ. Diet rapidly and reproducibly alters the human gut microbiome. Nature. 505: 559-63. PMID 24336217 DOI: 10.1038/Nature12820  0.632
2013 Szabo G, Preheim SP, Kauffman KM, David LA, Shapiro J, Alm EJ, Polz MF. Reproducibility of Vibrionaceae population structure in coastal bacterioplankton. The Isme Journal. 7: 509-19. PMID 23178668 DOI: 10.1038/Ismej.2012.134  0.684
2011 Smillie CS, Smith MB, Friedman J, Cordero OX, David LA, Alm EJ. Ecology drives a global network of gene exchange connecting the human microbiome. Nature. 480: 241-4. PMID 22037308 DOI: 10.1038/Nature10571  0.533
2011 David LA, Alm EJ. Rapid evolutionary innovation during an Archaean genetic expansion. Nature. 469: 93-6. PMID 21170026 DOI: 10.1038/Nature09649  0.471
2011 Preheim SP, Boucher Y, Wildschutte H, David LA, Veneziano D, Alm EJ, Polz MF. Metapopulation structure of Vibrionaceae among coastal marine invertebrates. Environmental Microbiology. 13: 265-75. PMID 20819104 DOI: 10.1111/J.1462-2920.2010.02328.X  0.707
2009 Shapiro BJ, David LA, Friedman J, Alm EJ. Looking for Darwin's footprints in the microbial world. Trends in Microbiology. 17: 196-204. PMID 19375326 DOI: 10.1016/J.Tim.2009.02.002  0.545
2008 Hunt DE, David LA, Gevers D, Preheim SP, Alm EJ, Polz MF. Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science (New York, N.Y.). 320: 1081-5. PMID 18497299 DOI: 10.1126/Science.1157890  0.689
Low-probability matches (unlikely to be authored by this person)
2017 Washburne AD, Silverman JD, Leff JW, Bennett DJ, Darcy JL, Mukherjee S, Fierer N, David LA. Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets. Peerj. 5: e2969. PMID 28289558 DOI: 10.7717/Peerj.2969  0.277
2018 Silverman JD, Durand HK, Bloom RJ, Mukherjee S, David LA. Dynamic linear models guide design and analysis of microbiota studies within artificial human guts. Microbiome. 6: 202. PMID 30419949 DOI: 10.1186/s40168-018-0584-3  0.274
2007 Dubin-Thaler BJ, Hofman JM, Xenias HV, Spielman IA, Shneidman AH, David L, Dobereiner H, Wiggins C, Sheetz MP. Quantification of Cell Movement Reveals Distinct Edge Motility Types During Cell Spreading Nature Precedings. 2: 1-1. DOI: 10.1038/Npre.2007.391.1  0.268
2023 Petrone BL, Aqeel A, Jiang S, Durand HK, Dallow EP, McCann JR, Dressman HK, Hu Z, Tenekjian CB, Yancy WS, Lin PH, Scialla JJ, Seed PC, Rawls JF, Armstrong SC, ... ... David LA, et al. Diversity of plant DNA in stool is linked to dietary quality, age, and household income. Proceedings of the National Academy of Sciences of the United States of America. 120: e2304441120. PMID 37368926 DOI: 10.1073/pnas.2304441120  0.262
2017 Silverman JD, Washburne AD, Mukherjee S, David LA. A phylogenetic transform enhances analysis of compositional microbiota data. Elife. 6. PMID 28198697 DOI: 10.7554/eLife.21887  0.255
2022 Wu F, Ha Y, Weiss A, Wang M, Letourneau J, Wang S, Luo N, Huang S, Lee CT, David LA, You L. Modulation of microbial community dynamics by spatial partitioning. Nature Chemical Biology. PMID 35145274 DOI: 10.1038/s41589-021-00961-w  0.246
2021 Becken B, Davey L, Middleton DR, Mueller KD, Sharma A, Holmes ZC, Dallow E, Remick B, Barton GM, David LA, McCann JR, Armstrong SC, Malkus P, Valdivia RH. Genotypic and Phenotypic Diversity among Human Isolates of Akkermansia muciniphila. Mbio. 12. PMID 34006653 DOI: 10.1128/mBio.00478-21  0.245
2023 Midani FS, David LA. Tracking defined microbial communities by multicolor flow cytometry reveals tradeoffs between productivity and diversity. Frontiers in Microbiology. 13: 910390. PMID 36687598 DOI: 10.3389/fmicb.2022.910390  0.244
2015 Weil A, Midani F, Chowdhury F, Khan A, Begum Y, Charles R, Calderwood SB, Ryan ET, Harris J, Qadri F, David L, Larocque R. The Gut Microbiome and Susceptibility to Vibrio cholerae Infection Open Forum Infectious Diseases. 2. DOI: 10.1093/Ofid/Ofv131.72  0.242
2022 Letourneau J, Holmes ZC, Dallow EP, Durand HK, Jiang S, Carrion VM, Gupta SK, Mincey AC, Muehlbauer MJ, Bain JR, David LA. Ecological memory of prior nutrient exposure in the human gut microbiome. The Isme Journal. PMID 35871250 DOI: 10.1038/s41396-022-01292-x  0.239
2023 Davey LE, Malkus PN, Villa M, Dolat L, Holmes ZC, Letourneau J, Ansaldo E, David LA, Barton GM, Valdivia RH. A genetic system for Akkermansia muciniphila reveals a role for mucin foraging in gut colonization and host sterol biosynthesis gene expression. Nature Microbiology. PMID 37337046 DOI: 10.1038/s41564-023-01407-w  0.239
2021 Silverman JD, Bloom RJ, Jiang S, Durand HK, Dallow E, Mukherjee S, David LA. Measuring and mitigating PCR bias in microbiota datasets. Plos Computational Biology. 17: e1009113. PMID 34228723 DOI: 10.1371/journal.pcbi.1009113  0.232
2018 David LA. Toward Personalized Control of Human Gut Bacterial Communities. Msystems. 3. PMID 29629415 DOI: 10.1128/mSystems.00165-17  0.23
2014 Daniel C, Stephen RZ, David L, Francis M, Catherine LT. Multivariate associations between child, maternal and family characteristics and low respective vocabulary ability at 8 years. Plos One. DOI: 10.1371/Journal.Pone.0101476.T005  0.227
2022 Holmes ZC, Villa MM, Durand HK, Jiang S, Dallow EP, Petrone BL, Silverman JD, Lin PH, David LA. Microbiota responses to different prebiotics are conserved within individuals and associated with habitual fiber intake. Microbiome. 10: 114. PMID 35902900 DOI: 10.1186/s40168-022-01307-x  0.22
2004 Glenn CF, Chow DK, David L, Cooke CA, Gami MS, Iser WB, Hanselman KB, Goldberg IG, Wolkow CA. Behavioral deficits during early stages of aging in Caenorhabditis elegans result from locomotory deficits possibly linked to muscle frailty. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. 59: 1251-60. PMID 15699524 DOI: 10.1093/Gerona/59.12.1251  0.215
2022 Wang T, Weiss A, Aqeel A, Wu F, Lopatkin AJ, David LA, You L. Horizontal gene transfer enables programmable gene stability in synthetic microbiota. Nature Chemical Biology. PMID 36050493 DOI: 10.1038/s41589-022-01114-3  0.214
2015 Boursier J, Mueller O, Barret M, Machado M, Fizanne L, Araujo-Perez F, Guy CD, Seed PC, Rawls JF, David LA, Hunault G, Oberti F, Calès P, Diehl AM. The severity of NAFLD is associated with gut dysbiosis and shift in the metabolic function of the gut microbiota. Hepatology (Baltimore, Md.). PMID 26600078 DOI: 10.1002/Hep.28356  0.214
2014 Daniel C, Stephen RZ, David L, Francis M, Catherine LT. The child, maternal and family characteristics of children in the low PPVT and middle-high PPVT groups at 8 years. Plos One. DOI: 10.1371/Journal.Pone.0101476.T004  0.21
2022 Pfister CA, Light SH, Bohannan B, Schmidt T, Martiny A, Hynson NA, Devkota S, David L, Whiteson K. Conceptual Exchanges for Understanding Free-Living and Host-Associated Microbiomes. Msystems. e0137421. PMID 35014872 DOI: 10.1128/msystems.01374-21  0.21
2014 Daniel C, Stephen RZ, David L, Francis M, Catherine LT. Sensitivity-Specificity of Multivariate Logistic Model at probability cut-off of 0.13. Plos One. DOI: 10.1371/Journal.Pone.0101476.T007  0.207
2014 Daniel C, Stephen RZ, David L, Francis M, Catherine LT. Sensitivity-Specificity Curve, Multivariate Logistic Model. Plos One. DOI: 10.1371/Journal.Pone.0101476.G002  0.203
2015 Kirsten JH, Nadia KC, David L, David Z, Stephen RZ. Wave 1 characteristics of the full Wave 1 sample (3–19 months), and the analytic samples at Wave 3 (4–5 years) and Wave 5 (8–9 years). Plos One. DOI: 10.1371/Journal.Pone.0133007.T001  0.198
2015 Kirsten JH, Nadia KC, David L, David Z, Stephen RZ. Results of log-binomial regression models estimating adjusted relative risk (RR) of having no support from friends, Wave 3 (4–5 years, n = 2,392) and Wave 5 (8–9 years, n = 2,351). Plos One. DOI: 10.1371/Journal.Pone.0133007.T003  0.197
2014 Daniel C, Stephen RZ, David L, Francis M, Catherine LT. Age-groups within the 4-year and 8-year age-groups. Plos One. DOI: 10.1371/Journal.Pone.0101476.T002  0.193
2014 Daniel C, Stephen RZ, David L, Francis M, Catherine LT. Empirical growth plots (n = 50). Plos One. DOI: 10.1371/Journal.Pone.0101476.G001  0.178
2018 Reese AT, Lulow K, David LA, Wright JP. Plant community and soil conditions individually affect soil microbial community assembly in experimental mesocosms. Ecology and Evolution. 8: 1196-1205. PMID 29375790 DOI: 10.1002/Ece3.3734  0.17
2020 Cholan PM, Han A, Woodie BR, Watchon M, Kurz AR, Laird AS, Britton WJ, Ye L, Holmes ZC, McCann JR, David LA, Rawls JF, Oehlers SH. Conserved anti-inflammatory effects and sensing of butyrate in zebrafish. Gut Microbes. 12: 1-11. PMID 33064972 DOI: 10.1080/19490976.2020.1824563  0.168
2022 Holmes ZC, Tang H, Liu C, Bush AT, Neubert BC, Jiao Y, Covington M, Cardona DM, Kirtley MC, Chen BJ, Chao NJ, David LA, Sung AD. Prebiotic galactooligosaccharides interact with mouse gut microbiota to attenuate acute graft-versus-host disease. Blood. PMID 35930748 DOI: 10.1182/blood.2021015178  0.164
2024 Capra BT, Hudson S, Helder M, Laskaridou E, Johnson AL, Gilmore C, Marinik EL, Hedrick VE, Savla J, David LA, Davy KP, Davy BM. Ultra-processed food intake, gut microbiome, and glucose homeostasis in mid-life adults: Background, design, and methods of a controlled feeding trial. Contemporary Clinical Trials. 107427. PMID 38184104 DOI: 10.1016/j.cct.2024.107427  0.156
2018 Silverman JD, Durand HK, Bloom RJ, Mukherjee S, David LA. Correction to: Dynamic linear models guide design and analysis of microbiota studies within artificial human guts. Microbiome. 6: 212. PMID 30482245 DOI: 10.1186/s40168-018-0601-6  0.147
2020 Levade I, Saber MM, Midani F, Chowdhury F, Khan AI, Begum YA, Ryan ET, David LA, Calderwood SB, Harris JB, LaRocque RC, Qadri F, Shapiro BJ, Weil AA. Predicting Vibrio cholerae infection and disease severity using metagenomics in a prospective cohort study. The Journal of Infectious Diseases. PMID 32610345 DOI: 10.1093/Infdis/Jiaa358  0.122
2024 Pisetsky DS, Gedye MJ, David LA, Spencer DM. The Binding Properties of Antibodies to Z-DNA in the Sera of Normal Healthy Subjects. International Journal of Molecular Sciences. 25. PMID 38473808 DOI: 10.3390/ijms25052556  0.12
2024 Letourneau J, Walker L, Han SH, David LA, Younge N. A pilot study of fecal pH and redox as functional markers in the premature infant gut microbiome. Plos One. 19: e0290598. PMID 38261587 DOI: 10.1371/journal.pone.0290598  0.12
2020 Silverman JD, Roche K, Mukherjee S, David LA. Naught all zeros in sequence count data are the same. Computational and Structural Biotechnology Journal. 18: 2789-2798. PMID 33101615 DOI: 10.1016/j.csbj.2020.09.014  0.12
2018 Midani FS, Weil AA, Chowdhury F, Begum YA, Khan AI, Debela MD, Durand HK, Reese AT, Nimmagadda SN, Silverman JD, Ellis CN, Ryan ET, Calderwood SB, Harris JB, Qadri F, ... David LA, et al. Human Gut Microbiota Predicts Susceptibility to Vibrio cholerae Infection. The Journal of Infectious Diseases. PMID 29659916 DOI: 10.1093/Infdis/Jiy192  0.119
2008 Dubin-Thaler BJ, Hofman JM, Cai Y, Xenias H, Spielman I, Shneidman AV, David LA, Döbereiner HG, Wiggins CH, Sheetz MP. Quantification of cell edge velocities and traction forces reveals distinct motility modules during cell spreading. Plos One. 3: e3735. PMID 19011687 DOI: 10.1371/Journal.Pone.0003735  0.116
2020 Holmes ZC, Silverman JD, Dressman HK, Wei Z, Dallow EP, Armstrong SC, Seed PC, Rawls JF, David LA. Short-Chain Fatty Acid Production by Gut Microbiota from Children with Obesity Differs According to Prebiotic Choice and Bacterial Community Composition. Mbio. 11. PMID 32788375 DOI: 10.1128/Mbio.00914-20  0.111
2007 David LA, Wiggins CH. Benchmarking of dynamic Bayesian networks inferred from stochastic time-series data. Annals of the New York Academy of Sciences. 1115: 90-101. PMID 17925346 DOI: 10.1196/Annals.1407.009  0.104
2023 Letourneau J, Walker L, Han SH, David LA, Younge N. Fecal pH and redox as functional markers in the premature infant gut microbiome. Biorxiv : the Preprint Server For Biology. PMID 37645803 DOI: 10.1101/2023.08.14.553216  0.093
2021 McCann JR, Bihlmeyer NA, Roche K, Catherine C, Jawahar J, Kwee LC, Younge NE, Silverman J, Ilkayeva O, Sarria C, Zizzi A, Wootton J, Poppe L, Anderson P, Arlotto M, ... ... David LA, et al. The Pediatric Obesity Microbiome and Metabolism Study (POMMS): Methods, Baseline Data, and Early Insights. Obesity (Silver Spring, Md.). 29: 569-578. PMID 33624438 DOI: 10.1002/oby.23081  0.072
2020 Martiny JBH, Whiteson KL, Bohannan BJM, David LA, Hynson NA, McFall-Ngai M, Rawls JF, Schmidt TM, Abdo Z, Blaser MJ, Bordenstein S, Bréchot C, Bull CT, Dorrestein P, Eisen JA, et al. The emergence of microbiome centres. Nature Microbiology. 5: 2-3. PMID 31857734 DOI: 10.1038/S41564-019-0644-X  0.058
2019 Washburne AD, Silverman JD, Morton JT, Becker DJ, Crowley D, Mukherjee S, David LA, Plowright RK. Phylofactorization: a graph partitioning algorithm to identify phylogenetic scales of ecological data Ecological Monographs. 89: e01353. DOI: 10.1002/Ecm.1353  0.055
Hide low-probability matches.