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Sujai Kumar, Ph.D. - Publications

Affiliations: 
Institute of Evolutionary Biology University of Edinburgh, Edinburgh, Scotland, United Kingdom 
Area:
Evolutionary genomics, Bioinformatics
Website:
http://ylog.org/sujai
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Challis R, Kumar S, Sotero-Caio C, Brown M, Blaxter M. Genomes on a Tree (GoaT): A versatile, scalable search engine for genomic and sequencing project metadata across the eukaryotic tree of life. Wellcome Open Research. 8: 24. PMID 36864925 DOI: 10.12688/wellcomeopenres.18658.1  0.607
2021 Caurcel C, Laetsch DR, Challis R, Kumar S, Gharbi K, Blaxter M. MolluscDB: a genome and transcriptome database for molluscs. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 376: 20200157. PMID 33813885 DOI: 10.1098/rstb.2020.0157  0.766
2020 Pascoal S, Risse JE, Zhang X, Blaxter M, Cezard T, Challis RJ, Gharbi K, Hunt J, Kumar S, Langan E, Liu X, Rayner JG, Ritchie MG, Snoek BL, Trivedi U, et al. Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild. Evolution Letters. 4: 19-33. PMID 32055408 DOI: 10.1002/evl3.148  0.606
2019 Quintana JF, Kumar S, Ivens A, Chow FWN, Hoy AM, Fulton A, Dickinson P, Martin C, Taylor M, Babayan SA, Buck AH. Comparative analysis of small RNAs released by the filarial nematode Litomosoides sigmodontis in vitro and in vivo. Plos Neglected Tropical Diseases. 13: e0007811. PMID 31770367 DOI: 10.1371/Journal.Pntd.0007811  0.328
2019 Edelman NB, Frandsen PB, Miyagi M, Clavijo B, Davey J, Dikow RB, García-Accinelli G, Van Belleghem SM, Patterson N, Neafsey DE, Challis R, Kumar S, Moreira GRP, Salazar C, Chouteau M, et al. Genomic architecture and introgression shape a butterfly radiation. Science (New York, N.Y.). 366: 594-599. PMID 31672890 DOI: 10.1126/Science.Aaw2090  0.657
2019 Chow FW, Koutsovoulos G, Ovando-Vázquez C, Neophytou K, Bermúdez-Barrientos JR, Laetsch DR, Robertson E, Kumar S, Claycomb JM, Blaxter M, Abreu-Goodger C, Buck AH. Secretion of an Argonaute protein by a parasitic nematode and the evolution of its siRNA guides. Nucleic Acids Research. PMID 30820541 DOI: 10.1093/Nar/Gkz142  0.718
2019 Coghlan A, Tyagi R, Cotton JA, Holroyd N, Rosa BA, Tsai IJ, Laetsch DR, Beech RN, Day TA, Hallsworth-Pepin K, Ke H, Kuo T, Lee TJ, Martin J, Maizels RM, ... ... Kumar S, et al. Comparative genomics of the major parasitic worms Nature Genetics. 51: 163-174. PMID 30397333 DOI: 10.1038/S41588-018-0262-1  0.597
2018 Pinharanda A, Rousselle M, Martin SH, Hanly JJ, Davey JW, Kumar S, Galtier N, Jiggins CD. Sexually dimorphic gene expression and transcriptome evolution provides mixed evidence for a fast-Z effect in Heliconius. Journal of Evolutionary Biology. PMID 30523653 DOI: 10.1111/Jeb.13410  0.38
2017 Yoshida Y, Koutsovoulos G, Laetsch DR, Stevens L, Kumar S, Horikawa DD, Ishino K, Komine S, Kunieda T, Tomita M, Blaxter M, Arakawa K. Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus. Plos Biology. 15: e2002266. PMID 28749982 DOI: 10.1371/Journal.Pbio.2002266  0.746
2017 Challis RJ, Kumar S, Stevens L, Blaxter M. GenomeHubs: simple containerized setup of a custom Ensembl database and web server for any species. Database : the Journal of Biological Databases and Curation. 2017. PMID 28605774 DOI: 10.1093/Database/Bax039  0.682
2017 Nowell RW, Elsworth B, Oostra V, Zwaan BJ, Wheat CW, Saastamoinen M, Saccheri IJ, Van't Hof AE, Wasik BR, Connahs H, Aslam ML, Kumar S, Challis RJ, Monteiro A, Brakefield PM, et al. A high-coverage draft genome of the mycalesine butterfly Bicyclus anynana. Gigascience. PMID 28486658 DOI: 10.1093/Gigascience/Gix035  0.666
2016 Koutsovoulos G, Kumar S, Laetsch DR, Stevens L, Daub J, Conlon C, Maroon H, Thomas F, Aboobaker AA, Blaxter M. No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini. Proceedings of the National Academy of Sciences of the United States of America. PMID 27035985 DOI: 10.1073/Pnas.1600338113  0.741
2015 Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM. Erratum: Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity. Nature Communications. 6: 8772. PMID 26490107 DOI: 10.1038/Ncomms9772  0.494
2014 Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM. Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity. Nature Communications. 5: 5488. PMID 25421927 DOI: 10.1038/Ncomms6488  0.511
2014 Armstrong SD, Babayan SA, Lhermitte-Vallarino N, Gray N, Xia D, Martin C, Kumar S, Taylor DW, Blaxter ML, Wastling JM, Makepeace BL. Comparative analysis of the secretome from a model filarial nematode (Litomosoides sigmodontis) reveals maximal diversity in gravid female parasites. Molecular & Cellular Proteomics : McP. 13: 2527-44. PMID 24958169 DOI: 10.1074/Mcp.M114.038539  0.509
2014 Lunt DH, Kumar S, Koutsovoulos G, Blaxter ML. The complex hybrid origins of the root knot nematodes revealed through comparative genomics. Peerj. 2: e356. PMID 24860695 DOI: 10.7717/Peerj.356  0.629
2013 Schiffer PH, Kroiher M, Kraus C, Koutsovoulos GD, Kumar S, Camps JI, Nsah NA, Stappert D, Morris K, Heger P, Altmüller J, Frommolt P, Nürnberg P, Thomas WK, Blaxter ML, et al. The genome of Romanomermis culicivorax: revealing fundamental changes in the core developmental genetic toolkit in Nematoda. Bmc Genomics. 14: 923. PMID 24373391 DOI: 10.1186/1471-2164-14-923  0.605
2013 Kumar S, Jones M, Koutsovoulos G, Clarke M, Blaxter M. Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots. Frontiers in Genetics. 4: 237. PMID 24348509 DOI: 10.3389/Fgene.2013.00237  0.684
2013 Comandatore F, Sassera D, Montagna M, Kumar S, Koutsovoulos G, Thomas G, Repton C, Babayan SA, Gray N, Cordaux R, Darby A, Makepeace B, Blaxter M. Phylogenomics and analysis of shared genes suggest a single transition to mutualism in Wolbachia of nematodes. Genome Biology and Evolution. 5: 1668-74. PMID 23960254 DOI: 10.1093/Gbe/Evt125  0.627
2012 Kumar S, Koutsovoulos G, Kaur G, Blaxter M. Toward 959 nematode genomes. Worm. 1: 42-50. PMID 24058822 DOI: 10.4161/worm.19046  0.652
2012 Wang J, Mitreva M, Berriman M, Thorne A, Magrini V, Koutsovoulos G, Kumar S, Blaxter ML, Davis RE. Silencing of germline-expressed genes by DNA elimination in somatic cells. Developmental Cell. 23: 1072-80. PMID 23123092 DOI: 10.1016/J.Devcel.2012.09.020  0.654
2012 Godel C, Kumar S, Koutsovoulos G, Ludin P, Nilsson D, Comandatore F, Wrobel N, Thompson M, Schmid CD, Goto S, Bringaud F, Wolstenholme A, Bandi C, Epe C, Kaminsky R, et al. The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 26: 4650-61. PMID 22889830 DOI: 10.1096/Fj.12-205096  0.648
2012 Kumar S, Schiffer PH, Blaxter M. 959 Nematode Genomes: a semantic wiki for coordinating sequencing projects. Nucleic Acids Research. 40: D1295-300. PMID 22058131 DOI: 10.1093/Nar/Gkr826  0.652
2012 Blaxter M, Kumar S, Kaur G, Koutsovoulos G, Elsworth B. Genomics and transcriptomics across the diversity of the Nematoda Parasite Immunology. 34: 108-120. PMID 22044053 DOI: 10.1111/J.1365-3024.2011.01342.X  0.703
2011 Kumar S, Blaxter ML. Simultaneous genome sequencing of symbionts and their hosts. Symbiosis (Philadelphia, Pa.). 55: 119-126. PMID 22448083 DOI: 10.1007/S13199-012-0154-6  0.668
2010 Kumar S, Blaxter ML. Comparing de novo assemblers for 454 transcriptome data. Bmc Genomics. 11: 571. PMID 20950480 DOI: 10.1186/1471-2164-11-571  0.56
2010 Hunt P, Martinelli A, Modrzynska K, Borges S, Creasey A, Rodrigues L, Beraldi D, Loewe L, Fawcett R, Kumar S, Thomson M, Trivedi U, Otto TD, Pain A, Blaxter M, et al. Experimental evolution, genetic analysis and genome re-sequencing reveal the mutation conferring artemisinin resistance in an isogenic lineage of malaria parasites. Bmc Genomics. 11: 499. PMID 20846421 DOI: 10.1186/1471-2164-11-499  0.583
2010 Ferguson L, Lee SF, Chamberlain N, Nadeau N, Joron M, Baxter S, Wilkinson P, Papanicolaou A, Kumar S, Kee TJ, Clark R, Davidson C, Glithero R, Beasley H, Vogel H, et al. Characterization of a hotspot for mimicry: assembly of a butterfly wing transcriptome to genomic sequence at the HmYb/Sb locus. Molecular Ecology. 19: 240-54. PMID 20331783 DOI: 10.1111/J.1365-294X.2009.04475.X  0.514
2009 Keightley PD, Trivedi U, Thomson M, Oliver F, Kumar S, Blaxter ML. Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines. Genome Research. 19: 1195-201. PMID 19439516 DOI: 10.1101/Gr.091231.109  0.503
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