Joshua B. Plotkin - Publications

Affiliations: 
University of Pennsylvania, Philadelphia, PA, United States 
Area:
Evolutionary biology

106 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Carja O, Plotkin JB. Evolutionary Rescue Through Partly Heritable Phenotypic Variability. Genetics. PMID 30696715 DOI: 10.1534/genetics.118.301758  0.52
2018 Posfai A, Zhou J, Plotkin JB, Kinney JB, McCandlish DM. Selection for Protein Stability Enriches for Epistatic Interactions. Genes. 9. PMID 30134605 DOI: 10.3390/genes9090423  0.52
2017 Carja O, Xing T, Wallace EWJ, Plotkin JB, Shah P. riboviz: analysis and visualization of ribosome profiling datasets. Bmc Bioinformatics. 18: 461. PMID 29070028 DOI: 10.1186/s12859-017-1873-8  0.52
2017 Carja O, Plotkin JB. The evolutionary advantage of heritable phenotypic heterogeneity. Scientific Reports. 7: 5090. PMID 28698577 DOI: 10.1038/s41598-017-05214-2  0.52
2016 Newberry MG, McCandlish DM, Plotkin JB. Assortative mating can impede or facilitate fixation of underdominant alleles. Theoretical Population Biology. PMID 27497738 DOI: 10.1016/j.tpb.2016.07.003  0.52
2016 Stewart AJ, Plotkin JB. Small groups and long memories promote cooperation. Scientific Reports. 6: 26889. PMID 27247059 DOI: 10.1038/srep26889  1
2016 McCandlish DM, Shah P, Plotkin JB. Epistasis and the Dynamics of Reversion in Molecular Evolution. Genetics. PMID 27194749 DOI: 10.1534/genetics.116.188961  0.52
2016 McCandlish DM, Plotkin JB. Transcriptional errors and the drift barrier. Proceedings of the National Academy of Sciences of the United States of America. PMID 26966235 DOI: 10.1073/pnas.1601785113  0.52
2016 Weinberg DE, Shah P, Eichhorn SW, Hussmann JA, Plotkin JB, Bartel DP. Improved Ribosome-Footprint and mRNA Measurements Provide Insights into Dynamics and Regulation of Yeast Translation. Cell Reports. PMID 26876183 DOI: 10.1016/j.celrep.2016.01.043  1
2015 Kumar MS, Plotkin JB, Hannenhalli S. Regulated CRISPR Modules Exploit a Dual Defense Strategy of Restriction and Abortive Infection in a Model of Prokaryote-Phage Coevolution. Plos Computational Biology. 11: e1004603. PMID 26544847 DOI: 10.1371/journal.pcbi.1004603  1
2015 Neverov AD, Kryazhimskiy S, Plotkin JB, Bazykin GA. Coordinated Evolution of Influenza A Surface Proteins. Plos Genetics. 11: e1005404. PMID 26247472 DOI: 10.1371/journal.pgen.1005404  1
2015 McCandlish DM, Otwinowski J, Plotkin JB. Detecting epistasis from an ensemble of adapting populations. Evolution; International Journal of Organic Evolution. PMID 26194030 DOI: 10.1111/evo.12735  0.52
2015 Shah P, McCandlish DM, Plotkin JB. Contingency and entrenchment in protein evolution under purifying selection. Proceedings of the National Academy of Sciences of the United States of America. 112: E3226-35. PMID 26056312 DOI: 10.1073/pnas.1412933112  1
2015 Schulte MB, Draghi JA, Plotkin JB, Andino R. Experimentally guided models reveal replication principles that shape the mutation distribution of RNA viruses. Elife. 4. PMID 25635405 DOI: 10.7554/eLife.03753  1
2015 McCandlish DM, Epstein CL, Plotkin JB. Formal properties of the probability of fixation: identities, inequalities and approximations. Theoretical Population Biology. 99: 98-113. PMID 25450112 DOI: 10.1016/j.tpb.2014.11.004  1
2015 Stewart AJ, Plotkin JB. The evolvability of cooperation under local and non-local mutations Games. 6: 231-250. DOI: 10.3390/g6030231  1
2015 Mccandlish DM, Otwinowski J, Plotkin JB. Detecting epistasis from an ensemble of adapting populations Evolution. DOI: 10.1111/evo.12735  1
2014 Stewart AJ, Plotkin JB. Collapse of cooperation in evolving games. Proceedings of the National Academy of Sciences of the United States of America. 111: 17558-63. PMID 25422421 DOI: 10.1073/pnas.1408618111  1
2014 Otwinowski J, Plotkin JB. Inferring fitness landscapes by regression produces biased estimates of epistasis. Proceedings of the National Academy of Sciences of the United States of America. 111: E2301-9. PMID 24843135 DOI: 10.1073/pnas.1400849111  1
2014 Der R, Plotkin JB. The equilibrium allele frequency distribution for a population with reproductive skew. Genetics. 196: 1199-216. PMID 24473932 DOI: 10.1534/genetics.114.161422  1
2014 McCandlish DM, Epstein CL, Plotkin JB. The inevitability of unconditionally deleterious substitutions during adaptation. Evolution; International Journal of Organic Evolution. 68: 1351-64. PMID 24410330 DOI: 10.1111/evo.12350  1
2014 Feder AF, Kryazhimskiy S, Plotkin JB. Identifying signatures of selection in genetic time series. Genetics. 196: 509-22. PMID 24318534 DOI: 10.1534/genetics.113.158220  1
2013 Draghi JA, Plotkin JB. Selection biases the prevalence and type of epistasis along adaptive trajectories. Evolution; International Journal of Organic Evolution. 67: 3120-31. PMID 24151997 DOI: 10.1111/evo.12192  1
2013 Stewart AJ, Plotkin JB. From extortion to generosity, evolution in the Iterated Prisoner's Dilemma. Proceedings of the National Academy of Sciences of the United States of America. 110: 15348-53. PMID 24003115 DOI: 10.1073/pnas.1306246110  1
2013 Rajon E, Plotkin JB. The evolution of genetic architectures underlying quantitative traits. Proceedings. Biological Sciences / the Royal Society. 280: 20131552. PMID 23986107 DOI: 10.1098/rspb.2013.1552  1
2013 Stewart AJ, Plotkin JB. The evolution of complex gene regulation by low-specificity binding sites. Proceedings. Biological Sciences / the Royal Society. 280: 20131313. PMID 23945682 DOI: 10.1098/rspb.2013.1313  1
2013 Li Y, Myers JL, Bostick DL, Sullivan CB, Madara J, Linderman SL, Liu Q, Carter DM, Wrammert J, Esposito S, Principi N, Plotkin JB, Ross TM, Ahmed R, Wilson PC, et al. Immune history shapes specificity of pandemic H1N1 influenza antibody responses. The Journal of Experimental Medicine. 210: 1493-500. PMID 23857983 DOI: 10.1084/jem.20130212  1
2013 Li Y, Bostick DL, Sullivan CB, Myers JL, Griesemer SB, Stgeorge K, Plotkin JB, Hensley SE. Single hemagglutinin mutations that alter both antigenicity and receptor binding avidity influence influenza virus antigenic clustering. Journal of Virology. 87: 9904-10. PMID 23824816 DOI: 10.1128/JVI.01023-13  1
2013 Shah P, Ding Y, Niemczyk M, Kudla G, Plotkin JB. Rate-limiting steps in yeast protein translation. Cell. 153: 1589-601. PMID 23791185 DOI: 10.1016/j.cell.2013.05.049  1
2013 McCandlish DM, Rajon E, Shah P, Ding Y, Plotkin JB. The role of epistasis in protein evolution. Nature. 497: E1-2; discussion E2-. PMID 23719465 DOI: 10.1038/nature12219  1
2013 Harrison RD, Tan S, Plotkin JB, Slik F, Detto M, Brenes T, Itoh A, Davies SJ. Consequences of defaunation for a tropical tree community. Ecology Letters. 16: 687-94. PMID 23489437 DOI: 10.1111/ele.12102  1
2012 Ding Y, Shah P, Plotkin JB. Weak 5'-mRNA secondary structures in short eukaryotic genes. Genome Biology and Evolution. 4: 1046-53. PMID 23034215 DOI: 10.1093/gbe/evs082  1
2012 Stewart AJ, Seymour RM, Pomiankowski A, Plotkin JB. The population genetics of cooperative gene regulation. Bmc Evolutionary Biology. 12: 173. PMID 22954408 DOI: 10.1186/1471-2148-12-173  1
2012 Stewart AJ, Hannenhalli S, Plotkin JB. Why transcription factor binding sites are ten nucleotides long. Genetics. 192: 973-85. PMID 22887818 DOI: 10.1534/genetics.112.143370  1
2012 Morlon H, Kemps BD, Plotkin JB, Brisson D. Explosive radiation of a bacterial species group. Evolution; International Journal of Organic Evolution. 66: 2577-86. PMID 22834754 DOI: 10.1111/j.1558-5646.2012.01598.x  1
2012 Lipsitch M, Plotkin JB, Simonsen L, Bloom B. Evolution, safety, and highly pathogenic influenza viruses. Science (New York, N.Y.). 336: 1529-31. PMID 22723411 DOI: 10.1126/science.1223204  1
2012 Stewart AJ, Plotkin JB. Extortion and cooperation in the Prisoner's Dilemma. Proceedings of the National Academy of Sciences of the United States of America. 109: 10134-5. PMID 22711812 DOI: 10.1073/pnas.1208087109  1
2012 Toll-Riera M, Bostick D, Albà MM, Plotkin JB. Structure and age jointly influence rates of protein evolution. Plos Computational Biology. 8: e1002542. PMID 22693443 DOI: 10.1371/journal.pcbi.1002542  1
2012 Der R, Epstein C, Plotkin JB. Dynamics of neutral and selected alleles when the offspring distribution is skewed. Genetics. 191: 1331-44. PMID 22661323 DOI: 10.1534/genetics.112.140038  1
2012 Stewart AJ, Parsons TL, Plotkin JB. Environmental robustness and the adaptability of populations. Evolution; International Journal of Organic Evolution. 66: 1598-612. PMID 22519793 DOI: 10.1111/j.1558-5646.2011.01526.x  1
2012 Desai MM, Nicolaisen LE, Walczak AM, Plotkin JB. The structure of allelic diversity in the presence of purifying selection. Theoretical Population Biology. 81: 144-57. PMID 22198521 DOI: 10.1016/j.tpb.2011.12.002  1
2012 Walczak AM, Nicolaisen LE, Plotkin JB, Desai MM. The structure of genealogies in the presence of purifying selection: a fitness-class coalescent. Genetics. 190: 753-79. PMID 22135349 DOI: 10.1534/genetics.111.134544  1
2012 Draghi JA, Plotkin JB. A network of paths toward innovation Bioessays. DOI: 10.1002/bies.201200016  1
2011 Levy MZ, Small DS, Vilhena DA, Bowman NM, Kawai V, Cornejo del Carpio JG, Cordova-Benzaquen E, Gilman RH, Bern C, Plotkin JB. Retracing micro-epidemics of Chagas disease using epicenter regression. Plos Computational Biology. 7: e1002146. PMID 21935346 DOI: 10.1371/journal.pcbi.1002146  1
2011 Morlon H, Parsons TL, Plotkin JB. Reconciling molecular phylogenies with the fossil record. Proceedings of the National Academy of Sciences of the United States of America. 108: 16327-32. PMID 21930899 DOI: 10.1073/pnas.1102543108  1
2011 Der R, Epstein CL, Plotkin JB. Generalized population models and the nature of genetic drift. Theoretical Population Biology. 80: 80-99. PMID 21718713 DOI: 10.1016/j.tpb.2011.06.004  1
2011 Draghi JA, Plotkin JB. Molecular evolution: Hidden diversity sparks adaptation. Nature. 474: 45-6. PMID 21637251 DOI: 10.1038/474045a  1
2011 Kryazhimskiy S, Draghi JA, Plotkin JB. Evolution. In evolution, the sum is less than its parts. Science (New York, N.Y.). 332: 1160-1. PMID 21636764 DOI: 10.1126/science.1208072  1
2011 Vishnoi A, Sethupathy P, Simola D, Plotkin JB, Hannenhalli S. Genome-wide survey of natural selection on functional, structural, and network properties of polymorphic sites in Saccharomyces paradoxus. Molecular Biology and Evolution. 28: 2615-27. PMID 21478372 DOI: 10.1093/molbev/msr085  1
2011 Kryazhimskiy S, Dushoff J, Bazykin GA, Plotkin JB. Prevalence of epistasis in the evolution of influenza A surface proteins. Plos Genetics. 7: e1001301. PMID 21390205 DOI: 10.1371/journal.pgen.1001301  1
2011 Plotkin JB. Cell biology. The lives of proteins. Science (New York, N.Y.). 331: 683-4. PMID 21310990 DOI: 10.1126/science.1202010  1
2011 Draghi JA, Parsons TL, Plotkin JB. Epistasis increases the rate of conditionally neutral substitution in an adapting population. Genetics. 187: 1139-52. PMID 21288876 DOI: 10.1534/genetics.110.125997  1
2011 Plotkin JB, Kudla G. Synonymous but not the same: the causes and consequences of codon bias. Nature Reviews. Genetics. 12: 32-42. PMID 21102527 DOI: 10.1038/nrg2899  1
2011 Toole JL, Eagle N, Plotkin JB. Spatiotemporal correlations in criminal offense records Acm Transactions On Intelligent Systems and Technology. 2. DOI: 10.1145/1989734.1989742  1
2010 Salguero-Gómez R, Plotkin JB. Matrix dimensions bias demographic inferences: implications for comparative plant demography. The American Naturalist. 176: 710-22. PMID 20964622 DOI: 10.1086/657044  1
2010 Morlon H, Potts MD, Plotkin JB. Inferring the dynamics of diversification: a coalescent approach. Plos Biology. 8. PMID 20927410 DOI: 10.1371/journal.pbio.1000493  1
2010 Cao K, Chen-Plotkin AS, Plotkin JB, Wang LS. Age-correlated gene expression in normal and neurodegenerative human brain tissues. Plos One. 5. PMID 20927326 DOI: 10.1371/journal.pone.0013098  1
2010 Vishnoi A, Kryazhimskiy S, Bazykin GA, Hannenhalli S, Plotkin JB. Young proteins experience more variable selection pressures than old proteins. Genome Research. 20: 1574-81. PMID 20921233 DOI: 10.1101/gr.109595.110  1
2010 Plotkin JB. Transcriptional regulation is only half the story. Molecular Systems Biology. 6: 406. PMID 20739928 DOI: 10.1038/msb.2010.63  1
2010 Parsons TL, Quince C, Plotkin JB. Some consequences of demographic stochasticity in population genetics. Genetics. 185: 1345-54. PMID 20457879 DOI: 10.1534/genetics.110.115030  1
2010 Draghi JA, Parsons TL, Wagner GP, Plotkin JB. Mutational robustness can facilitate adaptation. Nature. 463: 353-5. PMID 20090752 DOI: 10.1038/nature08694  1
2010 Levy MZ, Malaga Chavez FS, Cornejo Del Carpio JG, Vilhena DA, McKenzie FE, Plotkin JB. Rational spatio-temporal strategies for controlling a Chagas disease vector in urban environments. Journal of the Royal Society, Interface / the Royal Society. 7: 1061-70. PMID 20061346 DOI: 10.1098/rsif.2009.0479  1
2010 Toole J, Eagle N, Plotkin J. Quantifying behavioral data sets of criminal activity Aaai Spring Symposium - Technical Report. 91-96.  1
2009 Goldstein E, Dushoff J, Ma J, Plotkin JB, Earn DJ, Lipsitch M. Reconstructing influenza incidence by deconvolution of daily mortality time series. Proceedings of the National Academy of Sciences of the United States of America. 106: 21825-9. PMID 20080801 DOI: 10.1073/pnas.0902958106  1
2009 Kryazhimskiy S, Tkacik G, Plotkin JB. The dynamics of adaptation on correlated fitness landscapes. Proceedings of the National Academy of Sciences of the United States of America. 106: 18638-43. PMID 19858497 DOI: 10.1073/pnas.0905497106  1
2009 Ndifon W, Plotkin JB, Dushoff J. On the accessibility of adaptive phenotypes of a bacterial metabolic network. Plos Computational Biology. 5: e1000472. PMID 19696877 DOI: 10.1371/journal.pcbi.1000472  1
2009 Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM. Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates. Plos Pathogens. 5: e1000503. PMID 19578438 DOI: 10.1371/journal.ppat.1000503  1
2009 Kudla G, Murray AW, Tollervey D, Plotkin JB. Coding-sequence determinants of gene expression in Escherichia coli. Science (New York, N.Y.). 324: 255-8. PMID 19359587 DOI: 10.1126/science.1170160  1
2009 Levy MZ, Bowman NM, Kawai V, Plotkin JB, Waller LA, Cabrera L, Steurer F, Seitz AE, Pinedo-Cancino VV, Cornejo del Carpio JG, Cordova Benzaquen E, McKenzie FE, Maguire JH, Gilman RH, Bern C. Spatial patterns in discordant diagnostic test results for Chagas disease: links to transmission hotspots. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 48: 1104-6. PMID 19278335 DOI: 10.1086/597464  1
2009 Kryazhimskiy S, Bazykin GA, Plotkin JB, Dushoff J. Directionality in the evolution of influenza A haemagglutinin (Proceedings of the Royal Society B: Biological Sciences (2008) 275, (2455-2464) 10.1098/rspb.2008.0521) Proceedings of the Royal Society B: Biological Sciences. 276: 3035. DOI: 10.1098/rspb.2009.0830  1
2008 Kryazhimskiy S, Plotkin JB. The population genetics of dN/dS. Plos Genetics. 4: e1000304. PMID 19081788 DOI: 10.1371/journal.pgen.1000304  1
2008 Desai MM, Plotkin JB. The polymorphism frequency spectrum of finitely many sites under selection. Genetics. 180: 2175-91. PMID 18854590 DOI: 10.1534/genetics.108.087361  1
2008 Parsons TL, Quince C, Plotkin JB. Absorption and fixation times for neutral and quasi-neutral populations with density dependence. Theoretical Population Biology. 74: 302-10. PMID 18835288 DOI: 10.1016/j.tpb.2008.09.001  1
2008 Sethupathy P, Giang H, Plotkin JB, Hannenhalli S. Genome-wide analysis of natural selection on human cis-elements. Plos One. 3: e3137. PMID 18781197 DOI: 10.1371/journal.pone.0003137  1
2008 Kryazhimskiy S, Bazykin GA, Plotkin JB, Plotkin J, Dushoff J. Directionality in the evolution of influenza A haemagglutinin. Proceedings. Biological Sciences / the Royal Society. 275: 2455-64. PMID 18647721 DOI: 10.1098/rspb.2008.0521  1
2008 Wu M, Li J, Engleka KA, Zhou B, Lu MM, Plotkin JB, Epstein JA. Persistent expression of Pax3 in the neural crest causes cleft palate and defective osteogenesis in mice. The Journal of Clinical Investigation. 118: 2076-87. PMID 18483623 DOI: 10.1172/JCI33715  1
2008 Lucks JB, Nelson DR, Kudla GR, Plotkin JB. Genome landscapes and bacteriophage codon usage. Plos Computational Biology. 4: e1000001. PMID 18463708 DOI: 10.1371/journal.pcbi.1000001  1
2008 Chen-Plotkin AS, Geser F, Plotkin JB, Clark CM, Kwong LK, Yuan W, Grossman M, Van Deerlin VM, Trojanowski JQ, Lee VM. Variations in the progranulin gene affect global gene expression in frontotemporal lobar degeneration. Human Molecular Genetics. 17: 1349-62. PMID 18223198 DOI: 10.1093/hmg/ddn023  1
2007 Fraser HB, Plotkin JB. Using protein complexes to predict phenotypic effects of gene mutation. Genome Biology. 8: R252. PMID 18042286 DOI: 10.1186/gb-2007-8-11-r252  1
2007 Green JL, Plotkin JB. A statistical theory for sampling species abundances. Ecology Letters. 10: 1037-45. PMID 17803677 DOI: 10.1111/j.1461-0248.2007.01101.x  1
2007 Dushoff J, Plotkin JB, Viboud C, Simonsen L, Miller M, Loeb M, Earn DJ. Vaccinating to protect a vulnerable subpopulation. Plos Medicine. 4: e174. PMID 17518515 DOI: 10.1371/journal.pmed.0040174  1
2007 Plotkin JB, Fraser HB. Assessing the determinants of evolutionary rates in the presence of noise. Molecular Biology and Evolution. 24: 1113-21. PMID 17347158 DOI: 10.1093/molbev/msm044  1
2006 Seidler TG, Plotkin JB. Seed dispersal and spatial pattern in tropical trees. Plos Biology. 4: e344. PMID 17048988 DOI: 10.1371/journal.pbio.0040344  1
2006 Plotkin JB, Dushoff J, Desai MM, Fraser HB. Codon usage and selection on proteins. Journal of Molecular Evolution. 63: 635-53. PMID 17043750 DOI: 10.1007/s00239-005-0233-x  1
2006 Plotkin JB, Dushoff J, Desai MM, Fraser HB. Estimating selection pressures from limited comparative data. Molecular Biology and Evolution. 23: 1457-9. PMID 16754640 DOI: 10.1093/molbev/msl021  1
2006 Dushoff J, Plotkin JB, Viboud C, Earn DJ, Simonsen L. Mortality due to influenza in the United States--an annualized regression approach using multiple-cause mortality data. American Journal of Epidemiology. 163: 181-7. PMID 16319291 DOI: 10.1093/aje/kwj024  1
2006 Ng KKS, Lee SL, Saw LG, Plotkin JB, Koh CL. Spatial structure and genetic diversity of three tropical tree species with different habitat preferences within a natural forest Tree Genetics and Genomes. 2: 121-131. DOI: 10.1007/s11295-006-0035-3  1
2005 Fraser HB, Khaitovich P, Plotkin JB, Pääbo S, Eisen MB. Aging and gene expression in the primate brain. Plos Biology. 3: e274. PMID 16048372 DOI: 10.1371/journal.pbio.0030274  1
2005 Lukhtanov VA, Kandul NP, Plotkin JB, Dantchenko AV, Haig D, Pierce NE. Reinforcement of pre-zygotic isolation and karyotype evolution in Agrodiaetus butterflies. Nature. 436: 385-9. PMID 16034417 DOI: 10.1038/nature03704  1
2004 Dushoff J, Plotkin JB, Levin SA, Earn DJ. Dynamical resonance can account for seasonality of influenza epidemics. Proceedings of the National Academy of Sciences of the United States of America. 101: 16915-6. PMID 15557003 DOI: 10.1073/pnas.0407293101  1
2004 Plotkin JB, Robins H, Levine AJ. Tissue-specific codon usage and the expression of human genes. Proceedings of the National Academy of Sciences of the United States of America. 101: 12588-91. PMID 15314228 DOI: 10.1073/pnas.0404957101  1
2004 Plotkin JB, Dushoff J, Fraser HB. Detecting selection using a single genome sequence of M. tuberculosis and P. falciparum. Nature. 428: 942-5. PMID 15118727 DOI: 10.1038/nature02458  1
2004 Levin SA, Dushoff J, Plotkin JB. Evolution and persistence of influenza A and other diseases. Mathematical Biosciences. 188: 17-28. PMID 14766091 DOI: 10.1016/j.mbs.2003.08.010  1
2003 Plotkin JB, Dushoff J. Codon bias and frequency-dependent selection on the hemagglutinin epitopes of influenza A virus. Proceedings of the National Academy of Sciences of the United States of America. 100: 7152-7. PMID 12748378 DOI: 10.1073/pnas.1132114100  1
2002 Plotkin JB, Chave J, Ashton PS. Cluster analysis of spatial patterns in Malaysian tree species. The American Naturalist. 160: 629-44. PMID 18707513 DOI: 10.1086/342823  1
2002 Plotkin JB, Dushoff J, Levin SA. Hemagglutinin sequence clusters and the antigenic evolution of influenza A virus. Proceedings of the National Academy of Sciences of the United States of America. 99: 6263-8. PMID 11972025 DOI: 10.1073/pnas.082110799  1
2002 Plotkin JB, Nowak MA. The different effects of apoptosis and DNA repair on tumorigenesis. Journal of Theoretical Biology. 214: 453-67. PMID 11846602 DOI: 10.1006/jtbi.2001.2471  1
2002 Krakauer DC, Plotkin JB. Redundancy, antiredundancy, and the robustness of genomes. Proceedings of the National Academy of Sciences of the United States of America. 99: 1405-9. PMID 11818563 DOI: 10.1073/pnas.032668599  1
2002 Plotkin JB, Muller-Landau HC. Sampling the species composition of a landscape Ecology. 83: 3344-3356.  1
2002 Potts MD, Ashton PS, Kaufman LS, Plotkin JB. Habitat patterns in tropical rain forests: A comparison of 105 plots in northwest Borneo Ecology. 83: 2782-2797.  1
2001 Plotkin JB, Nowak MA. Major transitions in language evolution Entropy. 3: 227-246.  1
2000 Plotkin JB, Potts MD, Leslie N, Manokaran N, Lafrankie J, Ashton PS. Species-area curves, spatial aggregation, and habitat specialization in tropical forests. Journal of Theoretical Biology. 207: 81-99. PMID 11027481 DOI: 10.1006/jtbi.2000.2158  1
2000 Plotkin JB, Potts MD, Yu DW, Bunyavejchewin S, Condit R, Foster R, Hubbell S, LaFrankie J, Manokaran N, Seng LH, Sukumar R, Nowak MA, Ashton PS. Predicting species diversity in tropical forests. Proceedings of the National Academy of Sciences of the United States of America. 97: 10850-4. PMID 11005859  1
2000 Plotkin JB, Nowak MA. Language evolution and information theory. Journal of Theoretical Biology. 205: 147-59. PMID 10860707 DOI: 10.1006/jtbi.2000.2053  1
2000 Nowak MA, Plotkin JB, Jansen VA. The evolution of syntactic communication. Nature. 404: 495-8. PMID 10761917 DOI: 10.1038/35006635  1
1999 Nowak MA, Plotkin JB, Krakauer DC. The evolutionary language game. Journal of Theoretical Biology. 200: 147-62. PMID 10504282 DOI: 10.1006/jtbi.1999.0981  1
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