James F. Parham, Ph. D. - Related publications

Geological Sciences California State University, Fullerton, Fullerton, CA, United States 
Vertebrate Paleontology, Herpetology
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Talavera G, Kaliszewska ZA, Heath A, Pierce NE. Recent diversification of Chrysoritis butterflies in the South African Cape (Lepidoptera: Lycaenidae). Molecular Phylogenetics and Evolution. 148: 106817. PMID 32289447 DOI: 10.1016/j.ympev.2020.106817   
2020 Loureiro LO, Engstrom MD, Lim BK. Optimization of Genotype by Sequencing data for phylogenetic purposes. Methodsx. 7: 100892. PMID 32373482 DOI: 10.1016/j.mex.2020.100892   
2020 Arroyave J, Denton JSS, Stiassny MLJ. Pattern and timing of diversification in the African freshwater fish genus Distichodus (Characiformes: Distichodontidae). Bmc Evolutionary Biology. 20: 48. PMID 32336263 DOI: 10.1186/s12862-020-01615-6   
2020 Hughes MR, Duffield DA, Howe DK, Denver DR. First report of molecular characterization and phylogeny of Hall, 1916 (Nematoda: Trichuridae). Journal of Nematology. 52: 1-6. PMID 32329293 DOI: 10.21307/jofnem-2020-036   
2020 Li J, Xie DF, Guo XL, Zheng ZY, He XJ, Zhou SD. Comparative Analysis of the Complete Plastid Genome of Five Species and New Insights into DNA Barcoding and Phylogenetic Relationship. Plants (Basel, Switzerland). 9. PMID 32331381 DOI: 10.3390/plants9040543   
2020 Helmstetter AJ, Kamga SM, Bethune K, Lautenschläger T, Zizka A, Bacon CD, Wieringa JJ, Stauffer F, Antonelli A, Sonké B, Couvreur TLP. Unraveling the Phylogenomic Relationships of the Most Diverse African Palm Genus (Calamoideae, Arecaceae). Plants (Basel, Switzerland). 9. PMID 32340211 DOI: 10.3390/plants9040549   
2020 Everson KM, Goodman SM, Olson LE. Speciation and gene flow in two sympatric small mammals from Madagascar, Microgale fotsifotsy and M. soricoides (Mammalia: Tenrecidae). Molecular Ecology. PMID 32270561 DOI: 10.1111/mec.15433   
2020 Grosse M, Bakken T, Nygren A, Kongsrud JA, Capa M. Species delimitation analyses of NE Atlantic Chaetozone (Annelida, Cirratulidae) reveals hidden diversity among a common and abundant marine annelid. Molecular Phylogenetics and Evolution. 149: 106852. PMID 32417496 DOI: 10.1016/j.ympev.2020.106852   
2020 Kapli P, Yang Z, Telford MJ. Phylogenetic tree building in the genomic age. Nature Reviews. Genetics. PMID 32424311 DOI: 10.1038/s41576-020-0233-0   
2020 Kim T, Lee Y, Kil HJ, Park JK. The mitochondrial genome of (Cephalobomorpha) confirms non-monophyly of Tylenchina (Nematoda). Peerj. 8: e9108. PMID 32440374 DOI: 10.7717/peerj.9108   
2020 Hördt A, López MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, Gronow S, Kyrpides NC, Woyke T, Göker M. Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of . Frontiers in Microbiology. 11: 468. PMID 32373076 DOI: 10.3389/fmicb.2020.00468   
2020 Tereza C Thomé M, Lyra ML, Lemes P, Teixeira LS, Carolina Carnaval A, F B Haddad C, Canedo C. Outstanding diversity and microendemism in a clade of rare Atlantic Forest montane frogs. Molecular Phylogenetics and Evolution. 106813. PMID 32272149 DOI: 10.1016/j.ympev.2020.106813   
2020 Bradshaw M, Braun U, Wang S, Liu S, Feng J, Shin HD, Choi YJ, Takamatsu S, Bulgakov TS, Tobin PC. Phylogeny and taxonomy of powdery mildew on species. Mycologia. 1-17. PMID 32374657 DOI: 10.1080/00275514.2020.1739508   
2020 Patterson BD, Webala PW, Lavery TH, Agwanda BR, Goodman SM, Peterhans JCK, Demos TC. Evolutionary relationships and population genetics of the Afrotropical leaf-nosed bats (Chiroptera, Hipposideridae). Zookeys. 929: 117-161. PMID 32390744 DOI: 10.3897/zookeys.929.50240   
2020 Newton LG, Starrett J, Hendrixson BE, Derkarabetian S, Bond JE. Integrative species delimitation reveals cryptic diversity in the southern Appalachian Antrodiaetus unicolor (Araneae: Antrodiaetidae) species complex. Molecular Ecology. PMID 32452095 DOI: 10.1111/mec.15483   
2020 Sun X, Yu D, Xie Z, Dong J, Ding Y, Yao H, Greenslade P. Phylomitogenomic analyses on collembolan higher taxa with enhanced taxon sampling and discussion on method selection. Plos One. 15: e0230827. PMID 32282807 DOI: 10.1371/journal.pone.0230827   
2020 Macias AM, Geiser DM, Stajich JE, Łukasik P, Veloso C, Bublitz DC, Berger MC, Boyce GR, Hodge K, Kasson MT. Evolutionary relationships among spp. (Entomophthorales), obligate pathogens of cicadas. Mycologia. 1-15. PMID 32412847 DOI: 10.1080/00275514.2020.1742033   
2020 Santos MTT, Magalhães RF, Lyra ML, Santos FR, Zaher H, Giasson LOM, Garcia PCA, Carolina Carnaval A, Haddad CFB. Multilocus phylogeny of Paratelmatobiinae (Anura: Leptodactylidae) reveals strong spatial structure and previously unknown diversity in the Atlantic Forest hotspot. Molecular Phylogenetics and Evolution. 106819. PMID 32289449 DOI: 10.1016/j.ympev.2020.106819   
2020 Chagas ATA, Ludwig S, Pimentel JDSM, de Abreu NL, Nunez-Rodriguez DL, Leal HG, Kalapothakis E. Use of complete mitochondrial genome sequences to identify barcoding markers for groups with low genetic distance. Mitochondrial Dna. Part a, Dna Mapping, Sequencing, and Analysis. 1-8. PMID 32314625 DOI: 10.1080/24701394.2020.1748609   
2020 Li C, Ashworth MP, Mackiewicz P, Dąbek P, Witkowski J, Górecka E, Krzywda M, Witkowski A. Morphology, phylogeny, and molecular dating in Plagiogrammaceae family focused on Plagiogramma-Dimeregramma complex (Urneidophycidae, Bacillariophyceae). Molecular Phylogenetics and Evolution. 106808. PMID 32243996 DOI: 10.1016/j.ympev.2020.106808   
2020 Xu L, Liu P, Wang X, Van Damme K, Du F. Phylogenetic relationships and cryptic species in the genus Sthenoteuthis (Cephalopoda: Ommastrephidae) in the South China Sea. Molecular Phylogenetics and Evolution. 106846. PMID 32380284 DOI: 10.1016/j.ympev.2020.106846   
2020 Jaramillo AF, De la Riva I, Guayasamin JM, Chaparro JC, Gagliardi-Urrutia G, Gutiérrez R, Brcko I, Vilà C, Castroviejo-Fisher S. Vastly underestimated species richness of Amazonian salamanders (Plethodontidae: Bolitoglossa) and implications about plethodontid diversification. Molecular Phylogenetics and Evolution. 106841. PMID 32305511 DOI: 10.1016/j.ympev.2020.106841   
2020 Tanaka M, Kumakura D, Mino S, Doi H, Ogura Y, Hayashi T, Yumoto I, Cai M, Zhou YG, Gomez-Gil B, Araki T, Sawabe T. Genomic characterization of closely related species in the Rumoiensis clade infers ecogenomic signatures to non-marine environments. Environmental Microbiology. PMID 32383332 DOI: 10.1111/1462-2920.15062   
2020 Zhou M, Yang G, Sun G, Guo Z, Gong X, Pan Y. Resolving complicated relationships of the Panax bipinnatifidus complex in southwestern China by RAD-seq data. Molecular Phylogenetics and Evolution. 106851. PMID 32438045 DOI: 10.1016/j.ympev.2020.106851   
2020 Tidwell H, Nakhleh L. Integrated likelihood for phylogenomics under a no-common-mechanism model. Bmc Genomics. 21: 219. PMID 32299348 DOI: 10.1186/s12864-020-6608-y   
2020 Luo T, Xiao N, Gao K, Zhou J. A new species of (Anura, Megophryidae) from Guizhou Province, China. Zookeys. 923: 115-140. PMID 32292274 DOI: 10.3897/zookeys.923.47172   
2020 Strijk JS, Binh HT, Ngoc NV, Pereira JT, Slik JWF, Sukri RS, Suyama Y, Tagane S, Wieringa JJ, Yahara T, Hinsinger DD. Museomics for reconstructing historical floristic exchanges: Divergence of stone oaks across Wallacea. Plos One. 15: e0232936. PMID 32442164 DOI: 10.1371/journal.pone.0232936   
2020 Zhou Y, Li WW, Zhang YQ, Xing XC, Zhang JQ, Ren Y. Extensive reticulate evolution within Fargesia (s.l.) (Bambusoideae: Poaceae) and its allies: evidence from multiple nuclear markers. Molecular Phylogenetics and Evolution. 106842. PMID 32305509 DOI: 10.1016/j.ympev.2020.106842   
2020 Araujo Argolo L, López-Fernández H, Batalha-Filho H, Roberto Antunes de Mello Affonso P. Unraveling the systematics and evolution of the 'Geophagus' brasiliensis (Cichliformes: Cichlidae) species complex. Molecular Phylogenetics and Evolution. 106855. PMID 32442518 DOI: 10.1016/j.ympev.2020.106855   
2020 Chen JM, Xu K, Poyarkov NA, Wang K, Yuan ZY, Hou M, Suwannapoom C, Wang J, Che J. How little is known about "the little brown frogs": description of three new species of the genus (Anura: Megophryidae) from Yunnan Province, China. Zoological Research. 1-14. PMID 32323508 DOI: 10.24272/j.issn.2095-8137.2020.036   
2020 Anjos KA, Araújo-Silva SB, Fiorini LC, Duarte FC, Sampaio PHS, Rodrigueiro TSC, Harakava R, Mendes MC. Contribution of ITS towards identifying mites of the family Macrochelidae (Acari: Mesostigmata) collected from cattle manure in São Paulo, Brazil. Zootaxa. 4758: zootaxa.4758.3.9. PMID 32230135 DOI: 10.11646/zootaxa.4758.3.9   
2020 Kirchgatter K, de Oliveira Guimarães L, Hugo Yañez Trujillano H, Rafael Arias F, Cáceres AG, de Castro Duarte AMR, Dos Santos Malafronte R, Tubaki RM, Mureb Sallum MA. Phylogeny of () (Diptera: Culicidae) Using Mitochondrial Genes. Insects. 11. PMID 32456322 DOI: 10.3390/insects11050324   
2020 Gutierrez AC, Ordoqui E, Leclerque A, López Lastra C. A new species of (Laboulbeniomycetes: Herpomycetales) on (Blattodea: Blattidae) from Argentina. Mycologia. 1-8. PMID 32297827 DOI: 10.1080/00275514.2020.1726134   
2020 Yang X, Xie DF, Chen JP, Zhou SD, Yu Y, He XJ. Comparative Analysis of the Complete Chloroplast Genomes in Subgenus (Amaryllidaceae): Phylogenetic Relationship and Adaptive Evolution. Biomed Research International. 2020: 1732586. PMID 32420321 DOI: 10.1155/2020/1732586   
2020 Bernard J, Lumley LM, Buck M, Cobb TP. A new species of rake-legged mite, (Prostigmata, Caeculidae), from Canada and a systematic analysis of its genus. Zookeys. 926: 1-23. PMID 32336917 DOI: 10.3897/zookeys.926.48741   
2020 Nilsen AR, Wang XY, Soop K, Cooper JA, Ridley GS, Wallace M, Summerfield TC, Brown CM, Orlovich DA. Purple haze: Cryptic purple sequestrate in New Zealand. Mycologia. 1-18. PMID 32315246 DOI: 10.1080/00275514.2020.1730120   
2020 Martins FC, Cox SC, Irestedt M, Prŷs-Jones Nvestigation RP, Day JJ. A comprehensive molecular phylogeny of Afrotropical white-eyes (Aves: Zosteropidae) highlights prior underestimation of mainland diversity and complex colonisation history. Molecular Phylogenetics and Evolution. 106843. PMID 32330543 DOI: 10.1016/j.ympev.2020.106843   
2020 Parslow BA, Schwarz M, Stevens M. Molecular diversity and species delimitation in the family Gasteruptiidae (Hymenoptera: Evanioidea). Genome. PMID 32413273 DOI: 10.1139/gen-2019-0186   
2020 Borzée A, Fong JJ, Nguyen HQ, Jang Y. Large-Scale Hybridisation as an Extinction Threat to the Suweon Treefrog (Hylidae: ). Animals : An Open Access Journal From Mdpi. 10. PMID 32349428 DOI: 10.3390/ani10050764   
2020 Jeong R, Tchesunov AV, Lee W. Two species of Thoracostomopsidae (Nematoda: Enoplida) from Jeju Island, South Korea. Peerj. 8: e9037. PMID 32377453 DOI: 10.7717/peerj.9037   
2020 Daemi-Saeidabad M, Shojaeiyan A, Vivian-Smith A, Stenøien HK, Falahati-Anbaran M. The taxonomic significance of ddRADseq based microsatellite markers in the closely related species of Heracleum (Apiaceae). Plos One. 15: e0232471. PMID 32379780 DOI: 10.1371/journal.pone.0232471   
2020 Hoban ML, Williams JT. , a new species of combtooth blenny from the Central Pacific, illuminates the origins of the Hawaiian fish fauna. Peerj. 8: e8852. PMID 32231888 DOI: 10.7717/peerj.8852   
2020 Bray RA, Waeschenbach A, Littlewood DTJ, Halvorsen O, Olson PD. Molecular circumscription of new species of Gyrocotyle Diesing, 1850 (Cestoda) from deep-sea chimaeriform holocephalans in the North Atlantic. Systematic Parasitology. 97: 285-296. PMID 32328809 DOI: 10.1007/s11230-020-09912-w   
2020 Larson DA, Walker JF, Vargas OM, Smith SA. A consensus phylogenomic approach highlights paleopolyploid and rapid radiation in the history of Ericales. American Journal of Botany. PMID 32350864 DOI: 10.1002/ajb2.1469   
2020 Lim HC, Shakya SB, Harvey MG, Moyle RG, Fleischer RC, Braun MJ, Sheldon FH. Opening the door to greater phylogeographic inference in Southeast Asia: Comparative genomic study of five codistributed rainforest bird species using target capture and historical DNA. Ecology and Evolution. 10: 3222-3247. PMID 32273983 DOI: 10.1002/ece3.5964   
2020 Đuknić J, Jovanović VM, Atlagić JČ, Andjus S, Paunović M, Živić I, Popović N. (Linnaeus, 1758) and Carlsson, 1962 from the Balkan Peninsula. Zookeys. 922: 141-155. PMID 32265594 DOI: 10.3897/zookeys.922.49306   
2020 Dinesh KP, Vijayakumar SP, Ramesh V, Jayarajan A, Chandramouli SR, Shanker K. A deeply divergent lineage of Walkerana (Anura: Ranixalidae) from the Western Ghats of Peninsular India. Zootaxa. 4729: zootaxa.4729.2.7. PMID 32229864 DOI: 10.11646/zootaxa.4729.2.7   
2020 Gumbs R, Gray CL, Böhm M, Hoffmann M, Grenyer R, Jetz W, Meiri S, Roll U, Owen NR, Rosindell J. Global priorities for conservation of reptilian phylogenetic diversity in the face of human impacts. Nature Communications. 11: 2616. PMID 32457412 DOI: 10.1038/s41467-020-16410-6   
2020 Garduño-Montes de Oca EU, Vega-Badillo V, López-Caballero J, Ramírez-Cañas SA, Mata-López R. A New Species of (Nematoda: Coronostomatoidea) Parasite of (Coleoptera: Passalidae) from Mexico, and the Position of the Family in the Oxyuridomorpha. The Journal of Parasitology. 106: 172-179. PMID 32073359 DOI: 10.1645/19-64   
2020 Nguyen NH, Vu HT, Le ND, Nguyen TD, Duong HX, Tran HD. Molecular Identification and Evaluation of the Genetic Diversity of Species Collected in Southern Vietnam. Biology. 9. PMID 32290139 DOI: 10.3390/biology9040076