| Year |
Citation |
Score |
| 2024 |
Baker BJ, Hyde E, Leão P. Nature should be the model for microbial sciences. Journal of Bacteriology. e0022824. PMID 39158294 DOI: 10.1128/jb.00228-24 |
0.31 |
|
| 2024 |
Gong X, Xu L, Langwig MV, Chen Z, Huang S, Zhao D, Su L, Zhang Y, Francis CA, Liu J, Li J, Baker BJ. Globally distributed marine Gemmatimonadota have unique genomic potentials. Microbiome. 12: 149. PMID 39123272 DOI: 10.1186/s40168-024-01871-4 |
0.815 |
|
| 2024 |
Leão P, Little ME, Appler KE, Sahaya D, Aguilar-Pine E, Currie K, Finkelstein IJ, De Anda V, Baker BJ. Asgard archaea defense systems and their roles in the origin of eukaryotic immunity. Nature Communications. 15: 6386. PMID 39085212 DOI: 10.1038/s41467-024-50195-2 |
0.787 |
|
| 2024 |
Valentin-Alvarado LE, Appler KE, De Anda V, Schoelmerich MC, West-Roberts J, Kivenson V, Crits-Christoph A, Ly L, Sachdeva R, Greening C, Savage DF, Baker BJ, Banfield JF. Asgard archaea modulate potential methanogenesis substrates in wetland soil. Nature Communications. 15: 6384. PMID 39085194 DOI: 10.1038/s41467-024-49872-z |
0.804 |
|
| 2024 |
Tamarit D, Köstlbacher S, Appler KE, Panagiotou K, De Anda V, Rinke C, Baker BJ, Ettema TJG. Description of Asgardarchaeum abyssi gen. nov. spec. nov., a novel species within the class Asgardarchaeia and phylum Asgardarchaeota in accordance with the SeqCode. Systematic and Applied Microbiology. 47: 126525. PMID 38909391 DOI: 10.1016/j.syapm.2024.126525 |
0.807 |
|
| 2024 |
Rohwer RR, Kirkpatrick M, Garcia SL, Kellom M, McMahon KD, Baker BJ. Bacterial ecology and evolution converge on seasonal and decadal scales. Biorxiv : the Preprint Server For Biology. PMID 38370794 DOI: 10.1101/2024.02.06.579087 |
0.331 |
|
| 2024 |
Valentin-Alvarado LE, Fakra SC, Probst AJ, Giska JR, Jaffe AL, Oltrogge LM, West-Roberts J, Rowland J, Manga M, Savage DF, Greening C, Baker BJ, Banfield JF. Autotrophic biofilms sustained by deeply sourced groundwater host diverse bacteria implicated in sulfur and hydrogen metabolism. Microbiome. 12: 15. PMID 38273328 DOI: 10.1186/s40168-023-01704-w |
0.521 |
|
| 2023 |
Vázquez Rosas Landa M, De Anda V, Rohwer RR, Angelova A, Waldram G, Gutierrez T, Baker BJ. Exploring novel alkane-degradation pathways in uncultured bacteria from the North Atlantic Ocean. Msystems. e0061923. PMID 37702502 DOI: 10.1128/msystems.00619-23 |
0.378 |
|
| 2023 |
Bojanova DP, De Anda VY, Haghnegahdar MA, Teske AP, Ash JL, Young ED, Baker BJ, LaRowe DE, Amend JP. Well-hidden methanogenesis in deep, organic-rich sediments of Guaymas Basin. The Isme Journal. PMID 37596411 DOI: 10.1038/s41396-023-01485-y |
0.614 |
|
| 2023 |
Carlton JD, Langwig MV, Gong X, Aguilar-Pine EJ, Vázquez-Rosas-Landa M, Seitz KW, Baker BJ, De Anda V. Expansion of Armatimonadota through marine sediment sequencing describes two classes with unique ecological roles. Isme Communications. 3: 64. PMID 37355707 DOI: 10.1038/s43705-023-00269-x |
0.816 |
|
| 2023 |
Eme L, Tamarit D, Caceres EF, Stairs CW, De Anda V, Schön ME, Seitz KW, Dombrowski N, Lewis WH, Homa F, Saw JH, Lombard J, Nunoura T, Li WJ, Hua ZS, ... ... Baker BJ, et al. Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes. Nature. PMID 37316666 DOI: 10.1038/s41586-023-06186-2 |
0.828 |
|
| 2022 |
Howe KL, Seitz KW, Campbell LG, Baker BJ, Thrash JC, Rabalais NN, Rogener MK, Joye SB, Mason OU. Metagenomics and metatranscriptomics reveal broadly distributed, active, novel methanotrophs in the Gulf of Mexico hypoxic zone and in the marine water column. Fems Microbiology Ecology. PMID 36520069 DOI: 10.1093/femsec/fiac153 |
0.782 |
|
| 2022 |
Gong X, Del Río ÁR, Xu L, Chen Z, Langwig MV, Su L, Sun M, Huerta-Cepas J, De Anda V, Baker BJ. New globally distributed bacterial phyla within the FCB superphylum. Nature Communications. 13: 7516. PMID 36473838 DOI: 10.1038/s41467-022-34388-1 |
0.843 |
|
| 2022 |
Fang Y, Liu J, Yang J, Wu G, Hua Z, Dong H, Hedlund BP, Baker BJ, Jiang H. Compositional and Metabolic Responses of Autotrophic Microbial Community to Salinity in Lacustrine Environments. Msystems. e0033522. PMID 35862818 DOI: 10.1128/msystems.00335-22 |
0.36 |
|
| 2022 |
Rambo IM, Langwig MV, Leão P, De Anda V, Baker BJ. Genomes of six viruses that infect Asgard archaea from deep-sea sediments. Nature Microbiology. 7: 953-961. PMID 35760837 DOI: 10.1038/s41564-022-01150-8 |
0.803 |
|
| 2022 |
Wang Y, Li W, Baker BJ, Zhou Y, He L, Danchin A, Li Q, Gao Z. Carbon metabolism and adaptation of hyperalkaliphilic microbes in serpentinizing spring of Manleluag, the Philippines. Environmental Microbiology Reports. PMID 35199456 DOI: 10.1111/1758-2229.13052 |
0.386 |
|
| 2021 |
Langwig MV, De Anda V, Dombrowski N, Seitz KW, Rambo IM, Greening C, Teske AP, Baker BJ. Correction to: Large-scale protein level comparison of Deltaproteobacteria reveals cohesive metabolic groups. The Isme Journal. PMID 34811518 DOI: 10.1038/s41396-021-01091-w |
0.755 |
|
| 2021 |
Langwig MV, De Anda V, Dombrowski N, Seitz KW, Rambo IM, Greening C, Teske AP, Baker BJ. Large-scale protein level comparison of Deltaproteobacteria reveals cohesive metabolic groups. The Isme Journal. PMID 34331018 DOI: 10.1038/s41396-021-01057-y |
0.817 |
|
| 2021 |
Castelle CJ, Méheust R, Jaffe AL, Seitz K, Gong X, Baker BJ, Banfield JF. Protein Family Content Uncovers Lineage Relationships and Bacterial Pathway Maintenance Mechanisms in DPANN Archaea. Frontiers in Microbiology. 12: 660052. PMID 34140936 DOI: 10.3389/fmicb.2021.660052 |
0.83 |
|
| 2021 |
De Anda V, Chen LX, Dombrowski N, Hua ZS, Jiang HC, Banfield JF, Li WJ, Baker BJ. Brockarchaeota, a novel archaeal phylum with unique and versatile carbon cycling pathways. Nature Communications. 12: 2404. PMID 33893309 DOI: 10.1038/s41467-021-22736-6 |
0.582 |
|
| 2021 |
Baker BJ, Appler KE, Gong X. New Microbial Biodiversity in Marine Sediments. Annual Review of Marine Science. 13: 161-175. PMID 32746696 DOI: 10.1146/Annurev-Marine-032020-014552 |
0.836 |
|
| 2020 |
Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis KT, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC, Venter SN, ... ... Baker BJ, et al. Author Correction: Roadmap for naming uncultivated Archaea and Bacteria. Nature Microbiology. PMID 33184503 DOI: 10.1038/s41564-020-00827-2 |
0.756 |
|
| 2020 |
Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis KT, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC, Venter SN, ... Baker BJ, et al. Roadmap for naming uncultivated Archaea and Bacteria. Nature Microbiology. PMID 32514073 DOI: 10.1038/S41564-020-0733-X |
0.81 |
|
| 2020 |
Baker BJ, De Anda V, Seitz KW, Dombrowski N, Santoro AE, Lloyd KG. Author Correction: Diversity, ecology and evolution of Archaea. Nature Microbiology. PMID 32427979 DOI: 10.1038/S41564-020-0741-X |
0.735 |
|
| 2020 |
Baker BJ, De Anda V, Seitz KW, Dombrowski N, Santoro AE, Lloyd KG. Diversity, ecology and evolution of Archaea. Nature Microbiology. PMID 32367054 DOI: 10.1038/S41564-020-0715-Z |
0.818 |
|
| 2019 |
Mullis MM, Rambo IM, Baker BJ, Reese BK. Diversity, Ecology, and Prevalence of Antimicrobials in Nature. Frontiers in Microbiology. 10: 2518. PMID 31803148 DOI: 10.3389/Fmicb.2019.02518 |
0.811 |
|
| 2019 |
Rambo IM, Dombrowski N, Constant L, Erdner D, Baker BJ. Metabolic relationships of uncultured bacteria associated with the microalgae Gambierdiscus. Environmental Microbiology. PMID 31775181 DOI: 10.1111/1462-2920.14878 |
0.835 |
|
| 2019 |
Steen AD, Kevorkian RT, Bird JT, Dombrowski N, Baker BJ, Hagen SM, Mulligan KH, Schmidt JM, Webber AT, Royalty T, Alperin MJ. Kinetics and identities of extracellular peptidases in subsurface sediments of the White Oak River Estuary, NC. Applied and Environmental Microbiology. PMID 31324636 DOI: 10.1128/Aem.00102-19 |
0.448 |
|
| 2019 |
Huang JM, Baker BJ, Li JT, Wang Y. New microbial lineages capable of carbon fixation and nutrient cycling in deep-sea sediments of the northern South China Sea. Applied and Environmental Microbiology. PMID 31126943 DOI: 10.1128/Aem.00523-19 |
0.55 |
|
| 2019 |
Seitz KW, Dombrowski N, Eme L, Spang A, Lombard J, Sieber JR, Teske AP, Ettema TJG, Baker BJ. Asgard archaea capable of anaerobic hydrocarbon cycling. Nature Communications. 10: 1822. PMID 31015394 DOI: 10.1038/S41467-019-09364-X |
0.809 |
|
| 2019 |
Spang A, Stairs CW, Dombrowski N, Eme L, Lombard J, Caceres EF, Greening C, Baker BJ, Ettema TJG. Proposal of the reverse flow model for the origin of the eukaryotic cell based on comparative analyses of Asgard archaeal metabolism. Nature Microbiology. PMID 30936488 DOI: 10.1038/S41564-019-0406-9 |
0.707 |
|
| 2018 |
Thrash JC, Baker BJ, Seitz KW, Temperton B, Campbell LG, Rabalais NN, Henrissat B, Mason OU. Metagenomic Assembly and Prokaryotic Metagenome-Assembled Genome Sequences from the Northern Gulf of Mexico "Dead Zone". Microbiology Resource Announcements. 7. PMID 30533941 DOI: 10.1128/MRA.01033-18 |
0.77 |
|
| 2018 |
Dombrowski N, Teske AP, Baker BJ. Expansive microbial metabolic versatility and biodiversity in dynamic Guaymas Basin hydrothermal sediments. Nature Communications. 9: 4999. PMID 30479325 DOI: 10.1038/S41467-018-07418-0 |
0.704 |
|
| 2018 |
Narrowe AB, Spang A, Stairs CW, Caceres EF, Baker BJ, Miller CS, Ettema TJG. Complex evolutionary history of translation Elongation Factor 2 and diphthamide biosynthesis in Archaea and parabasalids. Genome Biology and Evolution. PMID 30060184 DOI: 10.1093/Gbe/Evy154 |
0.779 |
|
| 2018 |
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Baker BJ, et al. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 36: 660. PMID 29979671 DOI: 10.1038/Nbt0718-660A |
0.692 |
|
| 2018 |
Bacosa HP, Erdner DL, Rosenheim BE, Shetty P, Seitz KW, Baker BJ, Liu Z. Hydrocarbon degradation and response of seafloor sediment bacterial community in the northern Gulf of Mexico to light Louisiana sweet crude oil. The Isme Journal. PMID 29950702 DOI: 10.1038/S41396-018-0190-1 |
0.785 |
|
| 2018 |
Bartley R, Thompson C, Croke J, Pietsch T, Baker B, Hughes K, Kinsey-Henderson A. Insights into the history and timing of post-European land use disturbance on sedimentation rates in catchments draining to the Great Barrier Reef. Marine Pollution Bulletin. 131: 530-546. PMID 29886980 DOI: 10.1016/J.Marpolbul.2018.04.070 |
0.322 |
|
| 2018 |
Liu Y, Zhou Z, Pan J, Baker BJ, Gu JD, Li M. Comparative genomic inference suggests mixotrophic lifestyle for Thorarchaeota. The Isme Journal. PMID 29445130 DOI: 10.1038/S41396-018-0060-X |
0.568 |
|
| 2018 |
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Baker BJ, et al. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 36: 196. PMID 29406516 DOI: 10.1038/Nbt0218-196A |
0.724 |
|
| 2017 |
Chen LX, Méndez-García C, Dombrowski N, Servín-Garcidueñas LE, Eloe-Fadrosh EA, Fang BZ, Luo ZH, Tan S, Zhi XY, Hua ZS, Martinez-Romero E, Woyke T, Huang LN, Sánchez J, Peláez AI, ... ... Baker BJ, et al. Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota. The Isme Journal. PMID 29222443 DOI: 10.1038/S41396-017-0002-Z |
0.539 |
|
| 2017 |
Thrash JC, Seitz KW, Baker BJ, Temperton B, Gillies LE, Rabalais NN, Henrissat B, Mason OU. Metabolic Roles of Uncultivated Bacterioplankton Lineages in the Northern Gulf of Mexico "Dead Zone". Mbio. 8. PMID 28900024 DOI: 10.1128/Mbio.01017-17 |
0.798 |
|
| 2017 |
Dombrowski N, Seitz KW, Teske AP, Baker BJ. Genomic insights into potential interdependencies in microbial hydrocarbon and nutrient cycling in hydrothermal sediments. Microbiome. 5: 106. PMID 28835260 DOI: 10.1186/S40168-017-0322-2 |
0.849 |
|
| 2017 |
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Baker BJ, et al. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 35: 725-731. PMID 28787424 DOI: 10.1038/Nbt.3893 |
0.733 |
|
| 2017 |
Lazar CS, Baker BJ, Seitz KW, Teske AP. Genomic reconstruction of multiple lineages of uncultured benthic archaea suggests distinct biogeochemical roles and ecological niches. The Isme Journal. 11: 1058. PMID 28321126 DOI: 10.1038/ismej.2017.8 |
0.818 |
|
| 2017 |
Lazar CS, Baker BJ, Seitz KW, Teske AP. Genomic reconstruction of multiple lineages of uncultured benthic archaea suggests distinct biogeochemical roles and ecological niches. The Isme Journal. PMID 28085154 DOI: 10.1038/Ismej.2016.189 |
0.844 |
|
| 2017 |
Zaremba-Niedzwiedzka K, Caceres EF, Saw JH, Bäckström D, Juzokaite L, Vancaester E, Seitz KW, Anantharaman K, Starnawski P, Kjeldsen KU, Stott MB, Nunoura T, Banfield JF, Schramm A, Baker BJ, et al. Asgard archaea illuminate the origin of eukaryotic cellular complexity. Nature. PMID 28077874 DOI: 10.1038/Nature21031 |
0.805 |
|
| 2016 |
Dombrowski N, Donaho JA, Gutierrez T, Seitz KW, Teske AP, Baker BJ. Reconstructing metabolic pathways of hydrocarbon-degrading bacteria from the Deepwater Horizon oil spill. Nature Microbiology. 1: 16057. PMID 27572965 DOI: 10.1038/Nmicrobiol.2016.57 |
0.829 |
|
| 2016 |
Hug LA, Baker BJ, Anantharaman K, Brown CT, Probst AJ, Castelle CJ, Butterfield CN, Hernsdorf AW, Amano Y, Ise K, Suzuki Y, Dudek N, Relman DA, Finstad KM, Amundson R, et al. A new view of the tree of life. Nature Microbiology. 1: 16048. PMID 27572647 DOI: 10.1038/Nmicrobiol.2016.48 |
0.765 |
|
| 2016 |
Baker BJ, Saw JH, Lind AE, Lazar CS, Hinrichs KU, Teske AP, Ettema TJ. Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea. Nature Microbiology. 1: 16002. PMID 27572167 DOI: 10.1038/Nmicrobiol.2016.2 |
0.797 |
|
| 2016 |
Bird JT, Baker BJ, Probst AJ, Podar M, Lloyd KG. Culture Independent Genomic Comparisons Reveal Environmental Adaptations for Altiarchaeales. Frontiers in Microbiology. 7: 1221. PMID 27547202 DOI: 10.3389/Fmicb.2016.01221 |
0.557 |
|
| 2016 |
Wasmund K, Cooper M, Schreiber L, Lloyd KG, Baker BJ, Petersen DG, Jørgensen BB, Stepanauskas R, Reinhardt R, Schramm A, Loy A, Adrian L. Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi) in Sulfur Cycling. Mbio. 7. PMID 27143384 DOI: 10.1128/Mbio.00266-16 |
0.502 |
|
| 2016 |
Seitz KW, Lazar CS, Hinrichs KU, Teske AP, Baker BJ. Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction. The Isme Journal. PMID 26824177 DOI: 10.1038/Ismej.2015.233 |
0.847 |
|
| 2016 |
Hu P, Tom L, Singh A, Thomas BC, Baker BJ, Piceno YM, Andersen GL, Banfield JF. Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate Phyla and Other Microbial Community Members in Biogeochemical Transformations in Oil Reservoirs. Mbio. 7. PMID 26787827 DOI: 10.1128/Mbio.01669-15 |
0.603 |
|
| 2016 |
Baker BJ, Saw JH, Lind AE, Lazar CS, Hinrichs K, Teske AP, Ettema TJG. Erratum: Corrigendum: Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea Nature Microbiology. 1. DOI: 10.1038/Nmicrobiol.2016.32 |
0.765 |
|
| 2015 |
Lazar CS, Baker BJ, Seitz K, Hyde AS, Dick GJ, Hinrichs KU, Teske AP. Genomic evidence for distinct carbon substrate preferences and ecological niches of Bathyarchaeota in estuarine sediments. Environmental Microbiology. PMID 26626228 DOI: 10.1111/1462-2920.13142 |
0.848 |
|
| 2015 |
Li M, Baker BJ, Anantharaman K, Jain S, Breier JA, Dick GJ. Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea. Nature Communications. 6: 8933. PMID 26573375 DOI: 10.1038/Ncomms9933 |
0.798 |
|
| 2015 |
Baker BJ, Lazar CS, Teske AP, Dick GJ. Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria. Microbiome. 3: 14. PMID 25922666 DOI: 10.1186/S40168-015-0077-6 |
0.765 |
|
| 2014 |
Li M, Toner BM, Baker BJ, Breier JA, Sheik CS, Dick GJ. Microbial iron uptake as a mechanism for dispersing iron from deep-sea hydrothermal vents. Nature Communications. 5: 3192. PMID 24496055 DOI: 10.1038/Ncomms4192 |
0.566 |
|
| 2014 |
Li M, Jain S, Baker BJ, Taylor C, Dick GJ. Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep-sea hydrocarbon plume. Environmental Microbiology. 16: 60-71. PMID 23826624 DOI: 10.1111/1462-2920.12182 |
0.626 |
|
| 2013 |
Dick GJ, Anantharaman K, Baker BJ, Li M, Reed DC, Sheik CS. The microbiology of deep-sea hydrothermal vent plumes: ecological and biogeographic linkages to seafloor and water column habitats. Frontiers in Microbiology. 4: 124. PMID 23720658 DOI: 10.3389/Fmicb.2013.00124 |
0.779 |
|
| 2013 |
Baker BJ, Sheik CS, Taylor CA, Jain S, Bhasi A, Cavalcoli JD, Dick GJ. Community transcriptomic assembly reveals microbes that contribute to deep-sea carbon and nitrogen cycling. The Isme Journal. 7: 1962-73. PMID 23702516 DOI: 10.1038/Ismej.2013.85 |
0.672 |
|
| 2013 |
Schönknecht G, Chen WH, Ternes CM, Barbier GG, Shrestha RP, Stanke M, Bräutigam A, Baker BJ, Banfield JF, Garavito RM, Carr K, Wilkerson C, Rensing SA, Gagneul D, Dickenson NE, et al. Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Science (New York, N.Y.). 339: 1207-10. PMID 23471408 DOI: 10.1126/Science.1231707 |
0.601 |
|
| 2013 |
Baker BJ, Dick GJ. Omic approaches in microbial ecology: Charting the unknown Microbe. 8: 353-360. DOI: 10.1128/Microbe.8.353.1 |
0.631 |
|
| 2013 |
Baker BJ, Sheik CS, Taylor CA, Jain S, Bhasi A, Cavalcoli JD, Dick GJ. Erratum: Community transcriptomic assembly reveals microbes that contribute to deep-sea carbon and nitrogen cycling The Isme Journal. 7: 2060-2060. DOI: 10.1038/Ismej.2013.101 |
0.622 |
|
| 2012 |
Baker BJ, Lesniewski RA, Dick GJ. Genome-enabled transcriptomics reveals archaeal populations that drive nitrification in a deep-sea hydrothermal plume. The Isme Journal. 6: 2269-79. PMID 22695863 DOI: 10.1038/Ismej.2012.64 |
0.696 |
|
| 2011 |
Fujishima K, Sugahara J, Miller CS, Baker BJ, Di Giulio M, Takesue K, Sato A, Tomita M, Banfield JF, Kanai A. A novel three-unit tRNA splicing endonuclease found in ultrasmall Archaea possesses broad substrate specificity. Nucleic Acids Research. 39: 9695-704. PMID 21880595 DOI: 10.1093/Nar/Gkr692 |
0.704 |
|
| 2011 |
Miller CS, Baker BJ, Thomas BC, Singer SW, Banfield JF. EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data. Genome Biology. 12: R44. PMID 21595876 DOI: 10.1186/Gb-2011-12-5-R44 |
0.723 |
|
| 2010 |
Baker BJ, Comolli LR, Dick GJ, Hauser LJ, Hyatt D, Dill BD, Land ML, Verberkmoes NC, Hettich RL, Banfield JF. Enigmatic, ultrasmall, uncultivated Archaea. Proceedings of the National Academy of Sciences of the United States of America. 107: 8806-11. PMID 20421484 DOI: 10.1073/Pnas.0914470107 |
0.738 |
|
| 2010 |
Denef VJ, Kalnejais LH, Mueller RS, Wilmes P, Baker BJ, Thomas BC, VerBerkmoes NC, Hettich RL, Banfield JF. Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities. Proceedings of the National Academy of Sciences of the United States of America. 107: 2383-90. PMID 20133593 DOI: 10.1073/Pnas.0907041107 |
0.581 |
|
| 2009 |
Dick GJ, Andersson AF, Baker BJ, Simmons SL, Thomas BC, Yelton AP, Banfield JF. Community-wide analysis of microbial genome sequence signatures. Genome Biology. 10: R85. PMID 19698104 DOI: 10.1186/Gb-2009-10-8-R85 |
0.75 |
|
| 2009 |
Goltsman DS, Denef VJ, Singer SW, VerBerkmoes NC, Lefsrud M, Mueller RS, Dick GJ, Sun CL, Wheeler KE, Zemla A, Baker BJ, Hauser L, Land M, Shah MB, Thelen MP, et al. Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) bacteria in acid mine drainage biofilms. Applied and Environmental Microbiology. 75: 4599-615. PMID 19429552 DOI: 10.1128/Aem.02943-08 |
0.724 |
|
| 2009 |
Baker BJ, Tyson GW, Goosherst L, Banfield JF. Insights into the diversity of eukaryotes in acid mine drainage biofilm communities. Applied and Environmental Microbiology. 75: 2192-9. PMID 19201960 DOI: 10.1128/Aem.02500-08 |
0.604 |
|
| 2009 |
Comolli LR, Baker BJ, Downing KH, Siegerist CE, Banfield JF. Three-dimensional analysis of the structure and ecology of a novel, ultra-small archaeon. The Isme Journal. 3: 159-67. PMID 18946497 DOI: 10.1038/Ismej.2008.99 |
0.573 |
|
| 2006 |
Baker BJ, Tyson GW, Webb RI, Flanagan J, Hugenholtz P, Allen EE, Banfield JF. Lineages of acidophilic archaea revealed by community genomic analysis. Science (New York, N.Y.). 314: 1933-5. PMID 17185602 DOI: 10.1126/Science.1132690 |
0.599 |
|
| 2005 |
Moser DP, Gihring TM, Brockman FJ, Fredrickson JK, Balkwill DL, Dollhopf ME, Lollar BS, Pratt LM, Boice E, Southam G, Wanger G, Baker BJ, Pfiffner SM, Lin LH, Onstott TC. Desulfotomaculum and Methanobacterium spp. dominate a 4- to 5-kilometer-deep fault. Applied and Environmental Microbiology. 71: 8773-83. PMID 16332873 DOI: 10.1128/Aem.71.12.8773-8783.2005 |
0.704 |
|
| 2005 |
Tyson GW, Lo I, Baker BJ, Allen EE, Hugenholtz P, Banfield JF. Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community. Applied and Environmental Microbiology. 71: 6319-24. PMID 16204553 DOI: 10.1128/Aem.71.10.6319-6324.2005 |
0.593 |
|
| 2005 |
Ram RJ, Verberkmoes NC, Thelen MP, Tyson GW, Baker BJ, Blake RC, Shah M, Hettich RL, Banfield JF. Community proteomics of a natural microbial biofilm. Science (New York, N.Y.). 308: 1915-20. PMID 15879173 DOI: 10.1126/Science. |
0.589 |
|
| 2004 |
Druschel GK, Baker BJ, Gihring TM, Banfield JF. Acid mine drainage biogeochemistry at Iron Mountain, California. Geochemical Transactions. 5: 13. PMID 35412773 DOI: 10.1186/1467-4866-5-13 |
0.626 |
|
| 2004 |
Baker BJ, Lutz MA, Dawson SC, Bond PL, Banfield JF. Metabolically active eukaryotic communities in extremely acidic mine drainage. Applied and Environmental Microbiology. 70: 6264-71. PMID 15466574 DOI: 10.1128/Aem.70.10.6264-6271.2004 |
0.575 |
|
| 2003 |
Baker BJ, Banfield JF. Microbial communities in acid mine drainage. Fems Microbiology Ecology. 44: 139-52. PMID 19719632 DOI: 10.1016/S0168-6496(03)00028-X |
0.565 |
|
| 2003 |
Baker BJ, Hugenholtz P, Dawson SC, Banfield JF. Extremely acidophilic protists from acid mine drainage host Rickettsiales-lineage endosymbionts that have intervening sequences in their 16S rRNA genes. Applied and Environmental Microbiology. 69: 5512-8. PMID 12957940 DOI: 10.1128/Aem.69.9.5512-5518.2003 |
0.546 |
|
| 2003 |
Baker BJ, Moser DP, MacGregor BJ, Fishbain S, Wagner M, Fry NK, Jackson B, Speolstra N, Loos S, Takai K, Lollar BS, Fredrickson J, Balkwill D, Onstott TC, Wimpee CF, et al. Related assemblages of sulphate-reducing bacteria associated with ultradeep gold mines of South Africa and deep basalt aquifers of Washington State. Environmental Microbiology. 5: 267-77. PMID 12662174 DOI: 10.1046/J.1462-2920.2003.00408.X |
0.792 |
|
| 2003 |
Moser DP, Onstott TC, Fredrickson JK, Brockman FJ, Balkwill DL, Drake GR, Pfiffner SM, White DC, Takai K, Pratt LM, Fong J, Lollar BS, Slater G, Phelps TJ, Spoelstra N, ... ... Baker BJ, et al. Temporal Shifts in the Geochemistry and Microbial Community Structure of an Ultradeep Mine Borehole Following Isolation Geomicrobiology Journal. 20: 517-548. DOI: 10.1080/713851170 |
0.62 |
|
| 2002 |
Stahl DA, Fishbain S, Klein M, Baker BJ, Wagner M. Origins and diversification of sulfate-respiring microorganisms. Antonie Van Leeuwenhoek. 81: 189-95. PMID 12448717 DOI: 10.1023/A:1020506415921 |
0.476 |
|
| 2001 |
MacGregor BJ, Moser DP, Baker BJ, Alm EW, Maurer M, Nealson KH, Stahl DA. Seasonal and spatial variability in Lake Michigan sediment small-subunit rRNA concentrations. Applied and Environmental Microbiology. 67: 3908-22. PMID 11525985 DOI: 10.1128/Aem.67.9.3908-3922.2001 |
0.802 |
|
| 2001 |
MacGregor BJ, Van Mooy B, Baker BJ, Mellon M, Moisander PH, Paerl HW, Zehr J, Hollander D, Stahl DA. Microbiological, molecular biological and stable isotopic evidence for nitrogen fixation in the open waters of Lake Michigan. Environmental Microbiology. 3: 205-19. PMID 11321537 DOI: 10.1046/J.1462-2920.2001.00180.X |
0.718 |
|
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