| Year |
Citation |
Score |
| 2020 |
Dhillon N, Shelansky R, Townshend B, Jain M, Boeger H, Endy D, Kamakaka R. Permutational analysis of regulatory elements. Synthetic Biology (Oxford, England). 5: ysaa007. PMID 32775697 DOI: 10.1093/Synbio/Ysaa007 |
0.33 |
|
| 2019 |
Jaschke PR, Dotson GA, Hung KS, Liu D, Endy D. Definitive demonstration by synthesis of genome annotation completeness. Proceedings of the National Academy of Sciences of the United States of America. PMID 31719208 DOI: 10.1073/Pnas.1905990116 |
0.381 |
|
| 2019 |
Calles J, Justice I, Brinkley D, Garcia A, Endy D. Fail-safe genetic codes designed to intrinsically contain engineered organisms. Nucleic Acids Research. 47: 10439-10451. PMID 31511890 DOI: 10.1093/Nar/Gkz745 |
0.343 |
|
| 2017 |
Hecht A, Glasgow J, Jaschke PR, Bawazer LA, Munson MS, Cochran JR, Endy D, Salit M. Measurements of translation initiation from all 64 codons in E. coli. Nucleic Acids Research. PMID 28334756 DOI: 10.1093/Nar/Gkx070 |
0.318 |
|
| 2016 |
Nuñez IN, Matute TF, Del Valle I, Kan A, Choksi A, Endy D, Haseloff J, Rudge T, Federici F. Artificial symmetry-breaking for morphogenetic engineering bacterial colonies. Acs Synthetic Biology. PMID 27794593 DOI: 10.1021/Acssynbio.6B00149 |
0.376 |
|
| 2014 |
Galdzicki M, Clancy KP, Oberortner E, Pocock M, Quinn JY, Rodriguez CA, Roehner N, Wilson ML, Adam L, Anderson JC, Bartley BA, Beal J, Chandran D, Chen J, Densmore D, ... Endy D, et al. The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology. Nature Biotechnology. 32: 545-50. PMID 24911500 DOI: 10.1038/Nbt.2891 |
0.302 |
|
| 2013 |
Kosuri S, Goodman DB, Cambray G, Mutalik VK, Gao Y, Arkin AP, Endy D, Church GM. Composability of regulatory sequences controlling transcription and translation in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 110: 14024-9. PMID 23924614 DOI: 10.1073/Pnas.1301301110 |
0.686 |
|
| 2013 |
Bonnet J, Yin P, Ortiz ME, Subsoontorn P, Endy D. Amplifying genetic logic gates. Science (New York, N.Y.). 340: 599-603. PMID 23539178 DOI: 10.1126/Science.1232758 |
0.337 |
|
| 2013 |
Cambray G, Guimaraes JC, Mutalik VK, Lam C, Mai QA, Thimmaiah T, Carothers JM, Arkin AP, Endy D. Measurement and modeling of intrinsic transcription terminators. Nucleic Acids Research. 41: 5139-48. PMID 23511967 DOI: 10.1093/Nar/Gkt163 |
0.337 |
|
| 2013 |
Mutalik VK, Guimaraes JC, Cambray G, Mai QA, Christoffersen MJ, Martin L, Yu A, Lam C, Rodriguez C, Bennett G, Keasling JD, Endy D, Arkin AP. Quantitative estimation of activity and quality for collections of functional genetic elements. Nature Methods. 10: 347-53. PMID 23474467 DOI: 10.1038/Nmeth.2403 |
0.315 |
|
| 2013 |
Mutalik VK, Guimaraes JC, Cambray G, Lam C, Christoffersen MJ, Mai QA, Tran AB, Paull M, Keasling JD, Arkin AP, Endy D. Precise and reliable gene expression via standard transcription and translation initiation elements. Nature Methods. 10: 354-60. PMID 23474465 DOI: 10.1038/Nmeth.2404 |
0.392 |
|
| 2012 |
Ghosh D, Kohli AG, Moser F, Endy D, Belcher AM. Refactored M13 bacteriophage as a platform for tumor cell imaging and drug delivery. Acs Synthetic Biology. 1: 576-82. PMID 23656279 DOI: 10.1021/Sb300052U |
0.366 |
|
| 2012 |
Jaschke PR, Lieberman EK, Rodriguez J, Sierra A, Endy D. A fully decompressed synthetic bacteriophage øX174 genome assembled and archived in yeast. Virology. 434: 278-84. PMID 23079106 DOI: 10.1016/J.Virol.2012.09.020 |
0.35 |
|
| 2012 |
Ortiz ME, Endy D. Engineered cell-cell communication via DNA messaging. Journal of Biological Engineering. 6: 16. PMID 22958599 DOI: 10.1186/1754-1611-6-16 |
0.341 |
|
| 2012 |
Bonnet J, Subsoontorn P, Endy D. Rewritable digital data storage in live cells via engineered control of recombination directionality. Proceedings of the National Academy of Sciences of the United States of America. 109: 8884-9. PMID 22615351 DOI: 10.1073/Pnas.1202344109 |
0.387 |
|
| 2012 |
Subsoontorn P, Endy D. Design and analysis of genetically encoded counters Procedia Computer Science. 11: 43-54. DOI: 10.1016/J.Procs.2012.09.006 |
0.323 |
|
| 2010 |
Collins JJ, Endy D, Hutchison CA, Roberts RJ. Editorial-synthetic biology. Nucleic Acids Research. 38: 2513. PMID 20423911 DOI: 10.1093/Nar/Gkq221 |
0.435 |
|
| 2009 |
Martin L, Che A, Endy D. Gemini, a bifunctional enzymatic and fluorescent reporter of gene expression. Plos One. 4: e7569. PMID 19888458 DOI: 10.1371/Journal.Pone.0007569 |
0.315 |
|
| 2009 |
Kelly JR, Rubin AJ, Davis JH, Ajo-Franklin CM, Cumbers J, Czar MJ, de Mora K, Glieberman AL, Monie DD, Endy D. Measuring the activity of BioBrick promoters using an in vivo reference standard. Journal of Biological Engineering. 3: 4. PMID 19298678 DOI: 10.1186/1754-1611-3-4 |
0.321 |
|
| 2008 |
Canton B, Labno A, Endy D. Refinement and standardization of synthetic biological parts and devices. Nature Biotechnology. 26: 787-93. PMID 18612302 DOI: 10.1038/Nbt1413 |
0.343 |
|
| 2008 |
Shetty RP, Endy D, Knight TF. Engineering BioBrick vectors from BioBrick parts. Journal of Biological Engineering. 2: 5. PMID 18410688 DOI: 10.1186/1754-1611-2-5 |
0.344 |
|
| 2008 |
Endy D. Genomics. Reconstruction of the genomes. Science (New York, N.Y.). 319: 1196-7. PMID 18309068 DOI: 10.1126/Science.1155749 |
0.315 |
|
| 2008 |
Endy D. Synthetic biology: Can we make biology easy to engineer? Industrial Biotechnology. 4: 340-351. DOI: 10.1089/Ind.2008.4.340 |
0.338 |
|
| 2007 |
Kosuri S, Kelly JR, Endy D. TABASCO: A single molecule, base-pair resolved gene expression simulator. Bmc Bioinformatics. 8: 480. PMID 18093293 DOI: 10.1186/1471-2105-8-480 |
0.676 |
|
| 2007 |
Bügl H, Danner JP, Molinari RJ, Mulligan JT, Park HO, Reichert B, Roth DA, Wagner R, Budowle B, Scripp RM, Smith JA, Steele SJ, Church G, Endy D. DNA synthesis and biological security. Nature Biotechnology. 25: 627-9. PMID 17557094 DOI: 10.1038/Nbt0607-627 |
0.409 |
|
| 2006 |
Baker D, Church G, Collins J, Endy D, Jacobson J, Keasling J, Modrich P, Smolke C, Weiss R. Engineering life: Building a FAB for biology Scientific American. 294: 44-51. PMID 16711359 DOI: 10.1038/Scientificamerican0606-44 |
0.448 |
|
| 2005 |
Chan LY, Kosuri S, Endy D. Refactoring bacteriophage T7. Molecular Systems Biology. 1: 2005.0018. PMID 16729053 DOI: 10.1038/Msb4100025 |
0.69 |
|
| 2005 |
Endy D. Foundations for engineering biology. Nature. 438: 449-53. PMID 16306983 DOI: 10.1038/Nature04342 |
0.338 |
|
| 2001 |
Endy D, Brent R. Modelling cellular behaviour. Nature. 409: 391-395. PMID 11201753 DOI: 10.1038/35053181 |
0.307 |
|
| 2000 |
Endy D, You L, Yin J, Molineux IJ. Computation, prediction, and experimental tests of fitness for bacteriophage T7 mutants with permuted genomes Proceedings of the National Academy of Sciences of the United States of America. 97: 5375-5380. PMID 10792041 DOI: 10.1073/Pnas.090101397 |
0.684 |
|
| 2000 |
Endy D, Yin J. Toward Antiviral Strategies That Resist Viral Escape Antimicrobial Agents and Chemotherapy. 44: 1097-1099. PMID 10722522 DOI: 10.1128/Aac.44.4.1097-1099.2000 |
0.595 |
|
| 1997 |
Endy D, Kong D, Yin J. Intracellular kinetics of a growing virus: a genetically structured simulation for bacteriophage T7. Biotechnology and Bioengineering. 55: 375-389. PMID 18636496 DOI: 10.1002/(Sici)1097-0290(19970720)55:2<375::Aid-Bit15>3.0.Co;2-G |
0.66 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2007 |
Garfinkel MS, Endy D, Epstein GL, Friedman RM. Synthetic genomics | options for governance. Biosecurity and Bioterrorism : Biodefense Strategy, Practice, and Science. 5: 359-62. PMID 18081496 DOI: 10.1089/Bsp.2007.0923 |
0.294 |
|
| 2007 |
Garfinkel MS, Endy D, Epstein GL, Friedman RM. Synthetic genomics: Options for governance Industrial Biotechnology. 3: 333-365. DOI: 10.1089/Ind.2007.3.333 |
0.294 |
|
| 2005 |
Colman-Lerner A, Gordon A, Serra E, Chin T, Resnekov O, Endy D, Pesce CG, Brent R. Regulated cell-to-cell variation in a cell-fate decision system. Nature. 437: 699-706. PMID 16170311 DOI: 10.1038/Nature03998 |
0.292 |
|
| 2013 |
St-Pierre F, Cui L, Priest DG, Endy D, Dodd IB, Shearwin KE. One-step cloning and chromosomal integration of DNA Acs Synthetic Biology. 2: 537-541. PMID 24050148 DOI: 10.1021/Sb400021J |
0.291 |
|
| 2008 |
Apgar JF, Toettcher JE, Endy D, White FM, Tidor B. Stimulus design for model selection and validation in cell signaling. Plos Computational Biology. 4: e30. PMID 18282085 DOI: 10.1371/Journal.Pcbi.0040030 |
0.284 |
|
| 2003 |
Endy D, Yaffe MB. Molecular monogamy Nature. 426: 614-615. PMID 14668845 DOI: 10.1038/426614A |
0.28 |
|
| 2023 |
Maheshwari AJ, Calles J, Waterton SK, Endy D. Engineering tRNA abundances for synthetic cellular systems. Nature Communications. 14: 4594. PMID 37524714 DOI: 10.1038/s41467-023-40199-9 |
0.277 |
|
| 2011 |
Thomson TM, Benjamin KR, Bush A, Love T, Pincus D, Resnekov O, Yu RC, Gordon A, Colman-Lerner A, Endy D, Brent R. Scaffold number in yeast signaling system sets tradeoff between system output and dynamic range. Proceedings of the National Academy of Sciences of the United States of America. 108: 20265-70. PMID 22114196 DOI: 10.1073/Pnas.1004042108 |
0.275 |
|
| 2020 |
Abbott TR, Dhamdhere G, Liu Y, Lin X, Goudy L, Zeng L, Chemparathy A, Chmura S, Heaton NS, Debs R, Pande T, Endy D, La Russa MF, Lewis DB, Qi LS. Development of CRISPR as an Antiviral Strategy to Combat SARS-CoV-2 and Influenza. Cell. PMID 32353252 DOI: 10.1016/J.Cell.2020.04.020 |
0.262 |
|
| 2011 |
Rebolj D, Fischer M, Endy D, Moore T, Šorgo A. Can we grow buildings? Concepts and requirements for automated nano- to meter-scale building Advanced Engineering Informatics. 25: 390-398. DOI: 10.1016/J.Aei.2010.08.006 |
0.253 |
|
| 2008 |
St-Pierre F, Endy D. Determination of cell fate selection during phage lambda infection. Proceedings of the National Academy of Sciences of the United States of America. 105: 20705-10. PMID 19098103 DOI: 10.1073/Pnas.0808831105 |
0.252 |
|
| 2015 |
Galdzicki M, Kahl LJ, Endy D, Sauro HM. Reply to Intellectual property issues and synthetic biology standards. Nature Biotechnology. 33: 25. PMID 25574632 DOI: 10.1038/Nbt.3114 |
0.249 |
|
| 2015 |
Courbet A, Endy D, Renard E, Molina F, Bonnet J. Detection of pathological biomarkers in human clinical samples via amplifying genetic switches and logic gates. Science Translational Medicine. 7: 289ra83. PMID 26019219 DOI: 10.1126/Scitranslmed.Aaa3601 |
0.248 |
|
| 2013 |
Kahl LJ, Endy D. A survey of enabling technologies in synthetic biology. Journal of Biological Engineering. 7: 13. PMID 23663447 DOI: 10.1186/1754-1611-7-13 |
0.246 |
|
| 2013 |
Bonnet J, Endy D. Switches, switches, every where, in any drop we drink. Molecular Cell. 49: 232-3. PMID 23352244 DOI: 10.1016/J.Molcel.2013.01.005 |
0.24 |
|
| 2011 |
Endy D. Building a new biology Comptes Rendus Chimie. 14: 424-428. DOI: 10.1016/J.Crci.2010.11.013 |
0.228 |
|
| 2018 |
Fujishima K, Wang KM, Palmer JA, Abe N, Nakahigashi K, Endy D, Rothschild LJ. Reconstruction of cysteine biosynthesis using engineered cysteine-free enzymes. Scientific Reports. 8: 1776. PMID 29379050 DOI: 10.1038/S41598-018-19920-Y |
0.227 |
|
| 2016 |
Amit I, Baker D, Barker R, Berger B, Bertozzi C, Bhatia S, Biffi A, Demichelis F, Doudna J, Dowdy SF, Endy D, Helmstaedter M, Junca H, June C, Kamb S, et al. Voices of biotech. Nature Biotechnology. 34: 270-275. PMID 26963549 DOI: 10.1038/Nbt.3502 |
0.226 |
|
| 2016 |
Hecht A, Endy D, Salit ML, Munson MS. When Wavelengths Collide: Bias in Cell Abundance Measurements due to Expressed Fluorescent Proteins. Acs Synthetic Biology. PMID 27187075 DOI: 10.1021/Acssynbio.6B00072 |
0.224 |
|
| 2019 |
Fujishima K, Wang KM, Palmer JA, Abe N, Nakahigashi K, Endy D, Rothschild LJ. Author Correction: Reconstruction of cysteine biosynthesis using engineered cysteine-free enzymes. Scientific Reports. 9: 6242. PMID 30976030 DOI: 10.1038/S41598-019-42196-9 |
0.213 |
|
| 2006 |
Colman-Lerner A, Gordon A, Serra E, Chin T, Resnekov O, Endy D, Pesce CG, Brent R. Erratum: Regulated cell-to-cell variation in a cell-fate decision system Nature. 439: 502-502. DOI: 10.1038/Nature04476 |
0.212 |
|
| 2018 |
Kahl L, Molloy J, Patron N, Matthewman C, Haseloff J, Grewal D, Johnson R, Endy D. Opening options for material transfer. Nature Biotechnology. 36: 923-927. PMID 30307930 DOI: 10.1038/Nbt.4263 |
0.211 |
|
| 2021 |
Calles J, Justice I, Brinkley D, Garcia A, Endy D. Correction to 'Fail-safe genetic codes designed to intrinsically contain engineered organisms'. Nucleic Acids Research. PMID 34935957 DOI: 10.1093/nar/gkab1285 |
0.178 |
|
| 2008 |
Yu RC, Resnekov O, Abola AP, Andrews SS, Benjamin KR, Bruck J, Burbulis IE, Colman-Lerner A, Endy D, Gordon A, Holl M, Lok L, Pesce CG, Serra E, Smith RD, et al. The Alpha Project: a model system for systems biology research. Iet Systems Biology. 2: 222-33. PMID 19045818 DOI: 10.1049/iet-syb:20080127 |
0.173 |
|
| 2022 |
Maheshwari AJ, Sunol AM, Gonzalez E, Endy D, Zia RN. Colloidal Physics Modeling Reveals How Per-Ribosome Productivity Increases with Growth Rate in Escherichia coli. Mbio. e0286522. PMID 36537810 DOI: 10.1128/mbio.02865-22 |
0.172 |
|
| 2002 |
Ting AY, Endy D. Signal transduction. Decoding NF-kappaB signaling. Science (New York, N.Y.). 298: 1189-90. PMID 12424362 DOI: 10.1126/Science.1079331 |
0.167 |
|
| 2020 |
Perez R, Luccioni M, Kamakaka R, Clamons S, Gaut N, Stirling F, Adamala KP, Silver PA, Endy D. Enabling community-based metrology for wood-degrading fungi. Fungal Biology and Biotechnology. 7: 2. PMID 32206323 DOI: 10.1186/s40694-020-00092-2 |
0.128 |
|
| 2020 |
Meyer V, Basenko EY, Benz JP, Braus GH, Caddick MX, Csukai M, de Vries RP, Endy D, Frisvad JC, Gunde-Cimerman N, Haarmann T, Hadar Y, Hansen K, Johnson RI, Keller NP, et al. Growing a circular economy with fungal biotechnology: a white paper. Fungal Biology and Biotechnology. 7: 5. PMID 32280481 DOI: 10.1186/s40694-020-00095-z |
0.124 |
|
| 2022 |
Macfarlane NBW, Adams J, Bennett EL, Brooks TM, Delborne JA, Eggermont H, Endy D, Esvelt KM, Kolodziejczyk B, Kuiken T, Oliva MJ, Peña Moreno S, Slobodian L, Smith RB, Thizy D, et al. Direct and indirect impacts of synthetic biology on biodiversity conservation. Iscience. 25: 105423. PMID 36388962 DOI: 10.1016/j.isci.2022.105423 |
0.119 |
|
| 2022 |
Beal J, Telmer CA, Vignoni A, Boada Y, Baldwin GS, Hallett L, Lee T, Selvarajah V, Billerbeck S, Brown B, Cai GN, Cai L, Eisenstein E, Kiga D, Ross D, ... ... Endy D, et al. Multicolor plate reader fluorescence calibration. Synthetic Biology (Oxford, England). 7: ysac010. PMID 35949424 DOI: 10.1093/synbio/ysac010 |
0.092 |
|
| 2016 |
Cambray G, Guimaraes JC, Mutalik VK, Lam C, Mai QA, Thimmaiah T, Carothers JM, Arkin AP, Endy D. Measurement and modeling of intrinsic transcription terminators. Nucleic Acids Research. PMID 27131373 DOI: 10.1093/nar/gkw379 |
0.092 |
|
| 2019 |
Maheshwari AJ, Sunol AM, Gonzalez E, Endy D, Zia RN. Colloidal hydrodynamics of biological cells: A frontier spanning two fields Physical Review Fluids. 4. DOI: 10.1103/physrevfluids.4.110506 |
0.07 |
|
| 2008 |
Lentzos F, Bennett G, Boeke J, Endy D, Rabinow P. Visions and Challenges in Redesigning Life Biosocieties. 3: 311-323. DOI: 10.1017/S1745855208006224 |
0.055 |
|
| Hide low-probability matches. |
