| Year |
Citation |
Score |
| 2021 |
Van Den Bossche T, Arntzen MØ, Becher D, Benndorf D, Eijsink VGH, Henry C, Jagtap PD, Jehmlich N, Juste C, Kunath BJ, Mesuere B, Muth T, Pope PB, Seifert J, Tanca A, et al. The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes. Microbiome. 9: 243. PMID 34930457 DOI: 10.1186/s40168-021-01176-w |
0.533 |
|
| 2020 |
Schleicher L, Fritz G, Seifert J, Steuber J. Anoxic cell rupture of Prevotella bryantii by high-pressure homogenization protects the Na-translocating NADH:quinone oxidoreductase from oxidative damage. Archives of Microbiology. PMID 31955240 DOI: 10.1007/S00203-019-01805-X |
0.309 |
|
| 2019 |
Ziganshin AM, Wintsche B, Seifert J, Carstensen M, Born J, Kleinsteuber S. Spatial separation of metabolic stages in a tube anaerobic baffled reactor: reactor performance and microbial community dynamics. Applied Microbiology and Biotechnology. 103: 3915-3929. PMID 30915505 DOI: 10.1007/S00253-019-09767-2 |
0.661 |
|
| 2019 |
Pankoke H, Maus I, Loh G, Hüser A, Seifert J, Tilker A, Hark S, Sczyrba A, Pelzer S, Kleinbölting J. F5Evaluation of commercially available DNA extraction kits for the analysis of the broiler chicken cecal microbiota. Fems Microbiology Letters. PMID 30915459 DOI: 10.1093/Femsle/Fnz033 |
0.334 |
|
| 2019 |
Seifert J, Muth T. Editorial for Special Issue: Metaproteomics. Proteomes. 7. PMID 30841491 DOI: 10.3390/Proteomes7010009 |
0.346 |
|
| 2019 |
Tröscher-Mußotter J, Tilocca B, Stefanski V, Seifert J. Analysis of the Bacterial and Host Proteins along and across the Porcine Gastrointestinal Tract. Proteomes. 7. PMID 30634649 DOI: 10.3390/Proteomes7010004 |
0.38 |
|
| 2018 |
Borda-Molina D, Seifert J, Camarinha-Silva A. Current Perspectives of the Chicken Gastrointestinal Tract and Its Microbiome. Computational and Structural Biotechnology Journal. 16: 131-139. PMID 30026889 DOI: 10.1016/J.Csbj.2018.03.002 |
0.363 |
|
| 2017 |
Zecchin S, Mueller RC, Seifert J, Stingl U, Anantharaman K, von Bergen M, Cavalca L, Pester M. Rice paddy Nitrospirae encode and express genes related to sulfate respiration: proposal of the new genus Candidatus Sulfobium. Applied and Environmental Microbiology. PMID 29247059 DOI: 10.1128/Aem.02224-17 |
0.349 |
|
| 2017 |
Burbach K, Strang EJP, Mosenthin R, Camarinha‐Silva A, Seifert J. Porcine intestinal microbiota is shaped by diet composition based on rye or triticale Journal of Applied Microbiology. 123: 1571-1583. PMID 28960763 DOI: 10.1111/Jam.13595 |
0.322 |
|
| 2017 |
Deusch S, Camarinha-Silva A, Conrad J, Beifuss U, Rodehutscord M, Seifert J. A Structural and Functional Elucidation of the Rumen Microbiome Influenced by Various Diets and Microenvironments. Frontiers in Microbiology. 8: 1605. PMID 28883813 DOI: 10.3389/Fmicb.2017.01605 |
0.475 |
|
| 2017 |
Kaewtapee C, Burbach K, Tomforde G, Hartinger T, Camarinha-Silva A, Heinritz S, Seifert J, Wiltafsky M, Mosenthin R, Rosenfelder-Kuon P. Effect of and supplementation in diets with low- and high-protein content on ileal crude protein and amino acid digestibility and intestinal microbiota composition of growing pigs. Journal of Animal Science and Biotechnology. 8: 37. PMID 28469845 DOI: 10.1186/S40104-017-0168-2 |
0.357 |
|
| 2017 |
Oberbach A, Haange SB, Schlichting N, Heinrich M, Lehmann S, Till H, Hugenholtz F, Kullnick Y, Smidt H, Frank K, Seifert J, Jehmlich N, von Bergen M. Metabolic in vivo labelling highlights differences of metabolically active microbes from the mucosal gastrointestinal microbiome between high fat and normal chow diet. Journal of Proteome Research. PMID 28252966 DOI: 10.1021/Acs.Jproteome.6B00973 |
0.584 |
|
| 2016 |
Tilocca B, Witzig M, Rodehutscord M, Seifert J. Variations of Phosphorous Accessibility Causing Changes in Microbiome Functions in the Gastrointestinal Tract of Chickens. Plos One. 11: e0164735. PMID 27760159 DOI: 10.1371/Journal.Pone.0164735 |
0.439 |
|
| 2016 |
Serrano-Villar S, Rojo D, Martínez-Martínez M, Deusch S, Vázquez-Castellanos JF, Bargiela R, Sainz T, Vera M, Moreno S, Estrada V, Gosalbes MJ, Latorre A, Seifert J, Barbas C, Moya A, et al. Gut Bacteria Metabolism Impacts Immune Recovery in HIV-infected Individuals. Ebiomedicine. 8: 203-216. PMID 27428431 DOI: 10.1016/J.Ebiom.2016.04.033 |
0.303 |
|
| 2016 |
Serrano-Villar S, Rojo D, Martínez-Martínez M, Deusch S, Vázquez-Castellanos JF, Sainz T, Vera M, Moreno S, Estrada V, Gosalbes MJ, Latorre A, Margolles A, Seifert J, Barbas C, Moya A, et al. HIV infection results in metabolic alterations in the gut microbiota different from those induced by other diseases. Scientific Reports. 6: 26192. PMID 27189771 DOI: 10.1038/Srep26192 |
0.324 |
|
| 2016 |
Rabus R, Boll M, Heider J, Meckenstock RU, Buckel W, Einsle O, Ermler U, Golding BT, Gunsalus RP, Kroneck PM, Krüger M, Lueders T, Martins BM, Musat F, Richnow HH, ... ... Seifert J, et al. Anaerobic Microbial Degradation of Hydrocarbons: From Enzymatic Reactions to the Environment. Journal of Molecular Microbiology and Biotechnology. 26: 5-28. PMID 26960061 DOI: 10.1159/000443997 |
0.621 |
|
| 2016 |
Vogt C, Lueders T, Richnow HH, Krüger M, von Bergen M, Seifert J. Stable Isotope Probing Approaches to Study Anaerobic Hydrocarbon Degradation and Degraders. Journal of Molecular Microbiology and Biotechnology. 26: 195-210. PMID 26959525 DOI: 10.1159/000440806 |
0.663 |
|
| 2016 |
Schiffmann CL, Otto W, Hansen R, Nielsen PH, Adrian L, Seifert J, von Bergen M, Jehmlich N. Proteomic dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor. Data in Brief. 7: 253-6. PMID 26958645 DOI: 10.1016/J.Dib.2016.02.037 |
0.592 |
|
| 2016 |
Starke R, Keller A, Jehmlich N, Vogt C, Richnow HH, Kleinsteuber S, von Bergen M, Seifert J. Pulsed (13)C2-Acetate Protein-SIP Unveils Epsilonproteobacteria as Dominant Acetate Utilizers in a Sulfate-Reducing Microbial Community Mineralizing Benzene. Microbial Ecology. PMID 26846217 DOI: 10.1007/S00248-016-0731-Y |
0.797 |
|
| 2016 |
Heyer CME, Schmucker S, Weiss E, Eklund M, Aumiller T, Graeter E, Hofmann T, Rodehutscord M, Hoelzle LE, Seifert J, Stefanski V, Mosenthin R. 1732 Effect of supplemented mineral phosphorus and fermentable substrates on gut microbiota composition and metabolites, phytate hydrolysis, and health status of growing pigs. Journal of Animal Science. 94: 844-844. DOI: 10.2527/Jam2016-1732 |
0.307 |
|
| 2016 |
Starke R, Kermer R, Ullmann-Zeunert L, Baldwin IT, Seifert J, Bastida F, von Bergen M, Jehmlich N. Bacteria dominate the short-term assimilation of plant-derived N in soil Soil Biology and Biochemistry. 96: 30-38. DOI: 10.1016/J.Soilbio.2016.01.009 |
0.652 |
|
| 2015 |
Deusch S, Tilocca B, Camarinha-Silva A, Seifert J. News in livestock research - use of Omics-technologies to study the microbiota in the gastrointestinal tract of farm animals. Computational and Structural Biotechnology Journal. 13: 55-63. PMID 26900430 DOI: 10.1016/J.Csbj.2014.12.005 |
0.395 |
|
| 2015 |
Herbst FA, Lünsmann V, Kjeldal H, Jehmlich N, Tholey A, von Bergen M, Nielsen JL, Hettich RL, Seifert J, Nielsen PH. Enhancing Metaproteomics - The value of models and defined environmental microbial systems. Proteomics. PMID 26621789 DOI: 10.1002/Pmic.201500305 |
0.581 |
|
| 2015 |
Goris T, Schiffmann CL, Gadkari J, Schubert T, Seifert J, Jehmlich N, von Bergen M, Diekert G. Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates. Scientific Reports. 5: 13794. PMID 26387727 DOI: 10.1038/Srep13794 |
0.609 |
|
| 2015 |
Bargiela R, Herbst FA, Martínez-Martínez M, Seifert J, Rojo D, Cappello S, Genovese M, Crisafi F, Denaro R, Chernikova TN, Barbas C, von Bergen M, Yakimov MM, Ferrer M, Golyshin PN. Metaproteomics and metabolomics analyses of chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation. Proteomics. 15: 3508-20. PMID 26201687 DOI: 10.1002/Pmic.201400614 |
0.374 |
|
| 2015 |
Witzig M, Boguhn J, Zeder M, Seifert J, Rodehutscord M. Effect of donor animal species and their feeding on the composition of the microbial community establishing in a rumen simulation. Journal of Applied Microbiology. 119: 33-46. PMID 25879255 DOI: 10.1111/Jam.12829 |
0.356 |
|
| 2015 |
Deusch S, Seifert J. Catching the tip of the iceberg - evaluation of sample preparation protocols for metaproteomic studies of the rumen microbiota. Proteomics. 15: 3590-5. PMID 25765363 DOI: 10.1002/Pmic.201400556 |
0.403 |
|
| 2015 |
Kümmel S, Herbst FA, Bahr A, Duarte M, Pieper DH, Jehmlich N, Seifert J, von Bergen M, Bombach P, Richnow HH, Vogt C. Anaerobic naphthalene degradation by sulfate-reducing Desulfobacteraceae from various anoxic aquifers. Fems Microbiology Ecology. 91. PMID 25764566 DOI: 10.1093/Femsec/Fiv006 |
0.73 |
|
| 2015 |
Tobalina L, Bargiela R, Pey J, Herbst FA, Lores I, Rojo D, Barbas C, Peláez AI, Sánchez J, von Bergen M, Seifert J, Ferrer M, Planes FJ. Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data. Bioinformatics (Oxford, England). 31: 1771-9. PMID 25618865 DOI: 10.1093/Bioinformatics/Btv036 |
0.366 |
|
| 2015 |
Sachsenberg T, Herbst FA, Taubert M, Kermer R, Jehmlich N, von Bergen M, Seifert J, Kohlbacher O. MetaProSIP: automated inference of stable isotope incorporation rates in proteins for functional metaproteomics. Journal of Proteome Research. 14: 619-27. PMID 25412983 DOI: 10.1021/Pr500245W |
0.672 |
|
| 2015 |
Pöritz M, Schiffmann CL, Hause G, Heinemann U, Seifert J, Jehmlich N, von Bergen M, Nijenhuis I, Lechner U. Dehalococcoides mccartyi strain DCMB5 Respires a broad spectrum of chlorinated aromatic compounds. Applied and Environmental Microbiology. 81: 587-96. PMID 25381236 DOI: 10.1128/Aem.02597-14 |
0.564 |
|
| 2014 |
Lieder S, Jahn M, Seifert J, von Bergen M, Müller S, Takors R. Subpopulation-proteomics reveal growth rate, but not cell cycling, as a major impact on protein composition in Pseudomonas putida KT2440. Amb Express. 4: 71. PMID 25401072 DOI: 10.1186/S13568-014-0071-6 |
0.352 |
|
| 2014 |
Bozinovski D, Taubert M, Kleinsteuber S, Richnow HH, Bergen Mv, Vogt C, Seifert J. Metaproteogenomic analysis of a sulfate-reducing enrichment culture reveals genomic organization of key enzymes in the m-xylene degradation pathway and metabolic activity of proteobacteria. Systematic and Applied Microbiology. 37: 488-501. PMID 25156802 DOI: 10.1016/J.Syapm.2014.07.005 |
0.74 |
|
| 2014 |
Marozava S, Röling WF, Seifert J, Küffner R, von Bergen M, Meckenstock RU. Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part II. Mimicking environmental conditions during cultivation in retentostats. Systematic and Applied Microbiology. 37: 287-95. PMID 24736031 DOI: 10.1016/J.Syapm.2014.02.005 |
0.419 |
|
| 2014 |
Marozava S, Röling WF, Seifert J, Küffner R, von Bergen M, Meckenstock RU. Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part I. Batch cultivation with excess of carbon sources. Systematic and Applied Microbiology. 37: 277-86. PMID 24731775 DOI: 10.1016/J.Syapm.2014.02.004 |
0.397 |
|
| 2014 |
Kleindienst S, Herbst FA, Stagars M, von Netzer F, von Bergen M, Seifert J, Peplies J, Amann R, Musat F, Lueders T, Knittel K. Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps. The Isme Journal. 8: 2029-44. PMID 24722631 DOI: 10.1038/Ismej.2014.51 |
0.419 |
|
| 2014 |
Schiffmann CL, Jehmlich N, Otto W, Hansen R, Nielsen PH, Adrian L, Seifert J, von Bergen M. Proteome profile and proteogenomics of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor. Journal of Proteomics. 98: 59-64. PMID 24374378 DOI: 10.1016/J.Jprot.2013.12.009 |
0.646 |
|
| 2014 |
Schiffmann C, Hansen R, Baumann S, Kublik A, Nielsen PH, Adrian L, von Bergen M, Jehmlich N, Seifert J. Comparison of targeted peptide quantification assays for reductive dehalogenases by selective reaction monitoring (SRM) and precursor reaction monitoring (PRM). Analytical and Bioanalytical Chemistry. 406: 283-91. PMID 24220761 DOI: 10.1007/S00216-013-7451-7 |
0.603 |
|
| 2013 |
Bodelier PL, Meima-Franke M, Hordijk CA, Steenbergh AK, Hefting MM, Bodrossy L, von Bergen M, Seifert J. Microbial minorities modulate methane consumption through niche partitioning. The Isme Journal. 7: 2214-28. PMID 23788331 DOI: 10.1038/Ismej.2013.99 |
0.414 |
|
| 2013 |
Hernández E, Bargiela R, Diez MS, Friedrichs A, Pérez-Cobas AE, Gosalbes MJ, Knecht H, MartÃnez-MartÃnez M, Seifert J, von Bergen M, Artacho A, Ruiz A, Campoy C, Latorre A, Ott SJ, et al. Functional consequences of microbial shifts in the human gastrointestinal tract linked to antibiotic treatment and obesity. Gut Microbes. 4: 306-15. PMID 23782552 DOI: 10.4161/Gmic.25321 |
0.327 |
|
| 2013 |
Siegert M, Taubert M, Seifert J, von Bergen-Tomm M, Basen M, Bastida F, Gehre M, Richnow HH, Krüger M. The nitrogen cycle in anaerobic methanotrophic mats of the Black Sea is linked to sulfate reduction and biomass decomposition. Fems Microbiology Ecology. 86: 231-45. PMID 23746056 DOI: 10.1111/1574-6941.12156 |
0.368 |
|
| 2013 |
von Bergen M, Jehmlich N, Taubert M, Vogt C, Bastida F, Herbst FA, Schmidt F, Richnow HH, Seifert J. Insights from quantitative metaproteomics and protein-stable isotope probing into microbial ecology. The Isme Journal. 7: 1877-85. PMID 23677009 DOI: 10.1038/Ismej.2013.78 |
0.773 |
|
| 2013 |
Kung JW, Seifert J, von Bergen M, Bolla M. Cyclohexanecarboxyl-coenzyme a (CoA) and cyclohex-1-ene-1-carboxyl-CoA dehydrogenases, two enzymes involved in the fermentation of benzoate and crotonate in syntrophus aciditrophicus Journal of Bacteriology. 195: 3193-3200. PMID 23667239 DOI: 10.1128/Jb.00322-13 |
0.323 |
|
| 2013 |
Eberlein C, Estelmann S, Seifert J, von Bergen M, Müller M, Meckenstock RU, Boll M. Identification and characterization of 2-naphthoyl-coenzyme A reductase, the prototype of a novel class of dearomatizing reductases. Molecular Microbiology. 88: 1032-9. PMID 23646996 DOI: 10.1111/Mmi.12238 |
0.361 |
|
| 2013 |
Seifert J, Herbst FA, Halkjaer Nielsen P, Planes FJ, Jehmlich N, Ferrer M, von Bergen M. Bioinformatic progress and applications in metaproteogenomics for bridging the gap between genomic sequences and metabolic functions in microbial communities. Proteomics. 13: 2786-804. PMID 23625762 DOI: 10.1002/Pmic.201200566 |
0.62 |
|
| 2013 |
Herbst FA, Bahr A, Duarte M, Pieper DH, Richnow HH, von Bergen M, Seifert J, Bombach P. Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP). Proteomics. 13: 2910-20. PMID 23616470 DOI: 10.1002/Pmic.201200569 |
0.529 |
|
| 2013 |
Herbst FA, Taubert M, Jehmlich N, Behr T, Schmidt F, von Bergen M, Seifert J. Sulfur-34S stable isotope labeling of amino acids for quantification (SULAQ34) of proteomic changes in Pseudomonas fluorescens during naphthalene degradation. Molecular & Cellular Proteomics : McP. 12: 2060-9. PMID 23603340 DOI: 10.1074/Mcp.M112.025627 |
0.652 |
|
| 2013 |
Taubert M, von Bergen M, Seifert J. Limitations in detection of 15N incorporation by mass spectrometry in protein-based stable isotope probing (protein-SIP). Analytical and Bioanalytical Chemistry. 405: 3989-96. PMID 23503746 DOI: 10.1007/S00216-013-6828-Y |
0.481 |
|
| 2013 |
Schipp CJ, Marco-Urrea E, Kublik A, Seifert J, Adrian L. Organic cofactors in the metabolism of Dehalococcoides mccartyi strains. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20120321. PMID 23479751 DOI: 10.1098/Rstb.2012.0321 |
0.379 |
|
| 2013 |
Jechalke S, Franchini AG, Bastida F, Bombach P, Rosell M, Seifert J, von Bergen M, Vogt C, Richnow HH. Analysis of structure, function, and activity of a benzene-degrading microbial community. Fems Microbiology Ecology. 85: 14-26. PMID 23398624 DOI: 10.1111/1574-6941.12090 |
0.669 |
|
| 2013 |
Pérez-Cobas AE, Gosalbes MJ, Friedrichs A, Knecht H, Artacho A, Eismann K, Otto W, Rojo D, Bargiela R, von Bergen M, Neulinger SC, Däumer C, Heinsen FA, Latorre A, Barbas C, ... Seifert J, et al. Gut microbiota disturbance during antibiotic therapy: a multi-omic approach. Gut. 62: 1591-601. PMID 23236009 DOI: 10.1136/Gutjnl-2012-303184 |
0.391 |
|
| 2013 |
Tang S, Chan WW, Fletcher KE, Seifert J, Liang X, Löffler FE, Edwards EA, Adrian L. Functional characterization of reductive dehalogenases by using blue native polyacrylamide gel electrophoresis. Applied and Environmental Microbiology. 79: 974-81. PMID 23204411 DOI: 10.1128/Aem.01873-12 |
0.41 |
|
| 2013 |
Jahn M, Seifert J, von Bergen M, Schmid A, Bühler B, Müller S. Subpopulation-proteomics in prokaryotic populations. Current Opinion in Biotechnology. 24: 79-87. PMID 23153572 DOI: 10.1016/J.Copbio.2012.10.017 |
0.322 |
|
| 2013 |
Ferrer M, Ruiz A, Lanza F, Haange SB, Oberbach A, Till H, Bargiela R, Campoy C, Segura MT, Richter M, von Bergen M, Seifert J, Suarez A. Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure. Environmental Microbiology. 15: 211-26. PMID 22891823 DOI: 10.1111/J.1462-2920.2012.02845.X |
0.366 |
|
| 2013 |
Guazzaroni ME, Herbst FA, Lores I, Tamames J, Peláez AI, López-Cortés N, Alcaide M, Del Pozo MV, Vieites JM, von Bergen M, Gallego JL, Bargiela R, López-López A, Pieper DH, Rosselló-Móra R, ... ... Seifert J, et al. Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation. The Isme Journal. 7: 122-36. PMID 22832345 DOI: 10.1038/Ismej.2012.82 |
0.412 |
|
| 2013 |
Schlömann M, Kipry J, Mosler S, Poehlein A, Keller A, Janneck E, Erler B, Tominski C, Jwair RJ, Gelhaar N, Seifert J, Daniel R, Mühling M. Physiological, Genomic, and Proteomic Characterization of New “Ferrovum” Strains Obtained from a Pilot Plant for Mine-Water Treatment Advanced Materials Research. 825: 149-152. DOI: 10.4028/Www.Scientific.Net/Amr.825.149 |
0.334 |
|
| 2012 |
Morris BE, Herbst FA, Bastida F, Seifert J, von Bergen M, Richnow HH, Suflita JM. Microbial interactions during residual oil and n-fatty acid metabolism by a methanogenic consortium. Environmental Microbiology Reports. 4: 297-306. PMID 23760793 DOI: 10.1111/J.1758-2229.2012.00333.X |
0.405 |
|
| 2012 |
Haange SB, Oberbach A, Schlichting N, Hugenholtz F, Smidt H, von Bergen M, Till H, Seifert J. Metaproteome analysis and molecular genetics of rat intestinal microbiota reveals section and localization resolved species distribution and enzymatic functionalities. Journal of Proteome Research. 11: 5406-17. PMID 23016992 DOI: 10.1021/Pr3006364 |
0.393 |
|
| 2012 |
Wagner A, Cooper M, Ferdi S, Seifert J, Adrian L. Growth of Dehalococcoides mccartyi strain CBDB1 by reductive dehalogenation of brominated benzenes to benzene. Environmental Science & Technology. 46: 8960-8. PMID 22800291 DOI: 10.1021/Es3003519 |
0.323 |
|
| 2012 |
Taubert M, Vogt C, Wubet T, Kleinsteuber S, Tarkka MT, Harms H, Buscot F, Richnow HH, von Bergen M, Seifert J. Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium. The Isme Journal. 6: 2291-301. PMID 22791237 DOI: 10.1038/Ismej.2012.68 |
0.774 |
|
| 2012 |
Marco-Urrea E, Seifert J, von Bergen M, Adrian L. Stable isotope peptide mass spectrometry to decipher amino acid metabolism in Dehalococcoides strain CBDB1. Journal of Bacteriology. 194: 4169-77. PMID 22661690 DOI: 10.1128/Jb.00049-12 |
0.42 |
|
| 2012 |
Seifert J, Taubert M, Jehmlich N, Schmidt F, Völker U, Vogt C, Richnow HH, von Bergen M. Protein-based stable isotope probing (protein-SIP) in functional metaproteomics. Mass Spectrometry Reviews. 31: 683-97. PMID 22422553 DOI: 10.1002/Mas.21346 |
0.763 |
|
| 2012 |
Oberender J, Kung JW, Seifert J, von Bergen M, Boll M. Identification and characterization of a succinyl-coenzyme A (CoA):benzoate CoA transferase in Geobacter metallireducens. Journal of Bacteriology. 194: 2501-8. PMID 22408161 DOI: 10.1128/Jb.00306-12 |
0.378 |
|
| 2012 |
Bozinovski D, Herrmann S, Richnow HH, von Bergen M, Seifert J, Vogt C. Functional analysis of an anaerobic m-xylene-degrading enrichment culture using protein-based stable isotope probing. Fems Microbiology Ecology. 81: 134-44. PMID 22360283 DOI: 10.1111/J.1574-6941.2012.01334.X |
0.647 |
|
| 2012 |
Sultana M, Vogler S, Zargar K, Schmidt AC, Saltikov C, Seifert J, Schlömann M. New clusters of arsenite oxidase and unusual bacterial groups in enrichments from arsenic-contaminated soil Archives of Microbiology. 194: 623-635. PMID 22350109 DOI: 10.1007/S00203-011-0777-7 |
0.352 |
|
| 2012 |
Jehmlich N, Kopinke FD, Lenhard S, Vogt C, Herbst FA, Seifert J, Lissner U, Völker U, Schmidt F, von Bergen M. Sulfur-36S stable isotope labeling of amino acids for quantification (SULAQ). Proteomics. 12: 37-42. PMID 22106033 DOI: 10.1002/Pmic.201100057 |
0.738 |
|
| 2011 |
Kuntze K, Kiefer P, Baumann S, Seifert J, von Bergen M, Vorholt JA, Boll M. Enzymes involved in the anaerobic degradation of meta-substituted halobenzoates. Molecular Microbiology. 82: 758-69. PMID 22010634 DOI: 10.1111/J.1365-2958.2011.07856.X |
0.394 |
|
| 2011 |
Taubert M, Baumann S, von Bergen M, Seifert J. Exploring the limits of robust detection of incorporation of 13C by mass spectrometry in protein-based stable isotope probing (protein-SIP). Analytical and Bioanalytical Chemistry. 401: 1975-82. PMID 21822970 DOI: 10.1007/S00216-011-5289-4 |
0.504 |
|
| 2011 |
Marco-Urrea E, Paul S, Khodaverdi V, Seifert J, von Bergen M, Kretzschmar U, Adrian L. Identification and characterization of a re-citrate synthase in Dehalococcoides strain CBDB1. Journal of Bacteriology. 193: 5171-8. PMID 21784924 DOI: 10.1128/Jb.05120-11 |
0.377 |
|
| 2011 |
Taubert M, Jehmlich N, Vogt C, Richnow HH, Schmidt F, von Bergen M, Seifert J. Time resolved protein-based stable isotope probing (Protein-SIP) analysis allows quantification of induced proteins in substrate shift experiments. Proteomics. 11: 2265-74. PMID 21598395 DOI: 10.1002/Pmic.201000788 |
0.742 |
|
| 2011 |
Bastida F, Jechalke S, Bombach P, Franchini AG, Seifert J, von Bergen M, Vogt C, Richnow HH. Assimilation of benzene carbon through multiple trophic levels traced by different stable isotope probing methodologies. Fems Microbiology Ecology. 77: 357-69. PMID 21517916 DOI: 10.1111/J.1574-6941.2011.01118.X |
0.641 |
|
| 2011 |
Georgieva D, Seifert J, Öhler M, von Bergen M, Spencer P, Arni RK, Genov N, Betzel C. Pseudechis australis venomics: adaptation for a defense against microbial pathogens and recruitment of body transferrin. Journal of Proteome Research. 10: 2440-64. PMID 21417486 DOI: 10.1021/Pr101248E |
0.397 |
|
| 2011 |
Sultana M, Härtig C, Planer-Friedrich B, Seifert J, Schlömann M. Bacterial Communities in Bangladesh Aquifers Differing in Aqueous Arsenic Concentration Geomicrobiology Journal. 28: 198-211. DOI: 10.1080/01490451.2010.490078 |
0.302 |
|
| 2010 |
Jehmlich N, Schmidt F, Taubert M, Seifert J, Bastida F, von Bergen M, Richnow HH, Vogt C. Protein-based stable isotope probing. Nature Protocols. 5: 1957-66. PMID 21127489 DOI: 10.1038/Nprot.2010.166 |
0.758 |
|
| 2010 |
Jehmlich N, Kleinsteuber S, Vogt C, Benndorf D, Harms H, Schmidt F, Von Bergen M, Seifert J. Phylogenetic and proteomic analysis of an anaerobic toluene-degrading community. Journal of Applied Microbiology. 109: 1937-45. PMID 21070515 DOI: 10.1111/J.1365-2672.2010.04823.X |
0.798 |
|
| 2010 |
Fetzer I, Jehmlich N, Vogt C, Richnow HH, Seifert J, Harms H, von Bergen M, Schmidt F. Calculation of partial isotope incorporation into peptides measured by mass spectrometry. Bmc Research Notes. 3: 178. PMID 20576105 DOI: 10.1186/1756-0500-3-178 |
0.727 |
|
| 2010 |
Bastida F, Rosell M, Franchini AG, Seifert J, Finsterbusch S, Jehmlich N, Jechalke S, von Bergen M, Richnow HH. Elucidating MTBE degradation in a mixed consortium using a multidisciplinary approach. Fems Microbiology Ecology. 73: 370-84. PMID 20491917 DOI: 10.1111/J.1574-6941.2010.00889.X |
0.648 |
|
| 2010 |
Ohler M, Georgieva D, Seifert J, von Bergen M, Arni RK, Genov N, Betzel C. The venomics of Bothrops alternatus is a pool of acidic proteins with predominant hemorrhagic and coagulopathic activities. Journal of Proteome Research. 9: 2422-37. PMID 20329766 DOI: 10.1021/Pr901128X |
0.4 |
|
| 2010 |
Georgieva D, Ohler M, Seifert J, von Bergen M, Arni RK, Genov N, Betzel C. Snake venomic of Crotalus durissus terrificus--correlation with pharmacological activities. Journal of Proteome Research. 9: 2302-16. PMID 20205475 DOI: 10.1021/Pr901042P |
0.341 |
|
| 2010 |
Jehmlich N, Fetzer I, Seifert J, Mattow J, Vogt C, Harms H, Thiede B, Richnow HH, Von Bergen M, Schmidt F. Decimal place slope, a fast and precise method for quantifying 13C incorporation levels for detecting the metabolic activity of microbial species Molecular and Cellular Proteomics. 9: 1221-1227. PMID 20064840 DOI: 10.1074/Mcp.M900407-Mcp200 |
0.742 |
|
| 2010 |
Fetzer I, Jehmlich N, Vogt C, Richnow HH, Seifert J, Harms H, Von Bergen M, Schmidt F. Calculation of partial isotope incorporation into peptides measured by mass spectrometry Bmc Research Notes. 3. DOI: 10.1186/1756-0500-3-178 |
0.659 |
|
| 2010 |
Leibeling S, Taubert M, Seifert J, Bergen Mv, Harms H, Müller RH. Adaptation of the herbicide-degrading strain delftia acidovorans mc1 through carbonylation of rdpa as key enzyme Journal of Biotechnology. 150: 262-263. DOI: 10.1016/J.Jbiotec.2010.09.160 |
0.692 |
|
| 2009 |
Heinzel E, Janneck E, Glombitza F, Schlömann M, Seifert J. Population dynamics of iron-oxidizing communities in pilot plants for the treatment of acid mine waters. Environmental Science & Technology. 43: 6138-44. PMID 19746704 DOI: 10.1021/Es900067D |
0.313 |
|
| 2009 |
Jehmlich N, Schmidt F, Taubert M, Seifert J, von Bergen M, Richnow HH, Vogt C. Comparison of methods for simultaneous identification of bacterial species and determination of metabolic activity by protein-based stable isotope probing (Protein-SIP) experiments. Rapid Communications in Mass Spectrometry : Rcm. 23: 1871-8. PMID 19449321 DOI: 10.1002/Rcm.4084 |
0.756 |
|
| 2009 |
Heinzel E, Hedrich S, Janneck E, Glombitza F, Seifert J, Schlömann M. Bacterial diversity in a mine water treatment plant. Applied and Environmental Microbiology. 75: 858-61. PMID 19047391 DOI: 10.1128/Aem.01045-08 |
0.311 |
|
| 2009 |
Ehinger S, Seifert J, Kassahun A, Schmalz L, Hoth N, Schlömann M. Predominance of Methanolobus spp. and Methanoculleus spp. in the archaeal communities of saline gas field formation fluids. Geomicrobiology Journal. 26: 326-338. DOI: 10.1080/01490450902754441 |
0.345 |
|
| 2007 |
Gumnior K, Hoth N, Schlömann M, Seifert J. Analysis of the Microbial Community in an Acid Ground Water Characterized by Sulfate Reduction Activity Advanced Materials Research. 581-581. DOI: 10.4028/Www.Scientific.Net/Amr.20-21.581 |
0.346 |
|
| 2007 |
Heinzel E, Hedrich S, Seifert J, Schlömann M. Microbial Diversity in a Pilot Plant for Producing Iron Hydroxysulfates Advanced Materials Research. 527-530. DOI: 10.4028/Www.Scientific.Net/Amr.20-21.527 |
0.334 |
|
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