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C. Alex Buerkle - Publications

Affiliations: 
Botany University of Wyoming, Laramie, WY, United States 
Area:
Genetics, Ecology Biology, Biostatistics Biology
Website:
http://www.uwyo.edu/botany/people/faculty/alex-buerkle.html

77 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Gompert Z, DeRaad DA, Buerkle CA. A Next Generation of Hierarchical Bayesian Analyses of Hybrid Zones Enables Model-Based Quantification of Variation in Introgression in R. Ecology and Evolution. 14: e70548. PMID 39583044 DOI: 10.1002/ece3.70548  0.674
2024 Lowman HE, DeSiervo M, Hall RO, Jahner JP, Jimoh SO, Laughlin DC, Patterson AC, Weiss-Lehman C, Barbosa CC, Bell KL, Blaszczak JR, Buerkle CA, Carter AM, Collins SM, DeLeo V, et al. Reply to Hu: Postdoctoral consortia remove barriers to retention and effectively prepare participants for career advancement. Proceedings of the National Academy of Sciences of the United States of America. 121: e2418956121. PMID 39446391 DOI: 10.1073/pnas.2418956121  0.724
2024 Lowman HE, DeSiervo M, Hall RO, Jahner JP, Jimoh SO, Laughlin DC, Patterson AC, Weiss-Lehman C, Barbosa CC, Bell KL, Blaszczak JR, Buerkle CA, Carter AM, Collins SM, DeLeo V, et al. Collaborative consortia can boost postdoctoral workforce development. Proceedings of the National Academy of Sciences of the United States of America. 121: e2401812121. PMID 38959042 DOI: 10.1073/pnas.2401812121  0.717
2024 McFarlane SE, Jahner JP, Lindtke D, Buerkle CA, Mandeville EG. Selection leads to remarkable variability in the outcomes of hybridisation across replicate hybrid zones. Molecular Ecology. e17359. PMID 38699787 DOI: 10.1111/mec.17359  0.814
2022 Mandeville EG, Hall RO, Buerkle CA. Ecological outcomes of hybridization vary extensively in Catostomus fishes. Evolution; International Journal of Organic Evolution. PMID 36097356 DOI: 10.1111/evo.14624  0.782
2022 Gompert Z, Saley T, Philbin C, Yoon SA, Perry E, Sneck ME, Harrison JG, Buerkle CA, Fordyce JA, Nice CC, Dodson CD, Lebeis SL, Lucas LK, Forister ML. Additive genetic effects in interacting species jointly determine the outcome of caterpillar herbivory. Proceedings of the National Academy of Sciences of the United States of America. 119: e2206052119. PMID 36037349 DOI: 10.1073/pnas.2206052119  0.826
2022 Shastry V, Bell KL, Buerkle CA, Fordyce JA, Forister ML, Gompert Z, Lebeis SL, Lucas LK, Marion ZH, Nice CC. A continental-scale survey of Wolbachia infections in blue butterflies reveals evidence of interspecific transfer and invasion dynamics. G3 (Bethesda, Md.). PMID 35976120 DOI: 10.1093/g3journal/jkac213  0.785
2022 Gramlich S, Liu X, Favre A, Buerkle CA, Karrenberg S. A polygenic architecture with habitat-dependent effects underlies ecological differentiation in Silene. The New Phytologist. PMID 35586969 DOI: 10.1111/nph.18260  0.383
2022 Ponsford JCB, Hubbard CJ, Harrison JG, Maignien L, Buerkle CA, Weinig C. Whole-Genome Duplication and Host Genotype Affect Rhizosphere Microbial Communities. Msystems. e0097321. PMID 35014873 DOI: 10.1128/msystems.00973-21  0.723
2021 Harrison JG, Randolph GD, Buerkle CA. Characterizing Microbiomes via Sequencing of Marker Loci: Techniques To Improve Throughput, Account for Cross-Contamination, and Reduce Cost. Msystems. e0029421. PMID 34254828 DOI: 10.1128/mSystems.00294-21  0.653
2021 Harrison JG, Beltran LP, Buerkle CA, Cook D, Gardner DR, Parchman TL, Poulson SR, Forister ML. A suite of rare microbes interacts with a dominant, heritable, fungal endophyte to influence plant trait expression. The Isme Journal. PMID 33790425 DOI: 10.1038/s41396-021-00964-4  0.776
2021 Crow TM, Buerkle CA, Runcie DE, Hufford KM. Implications of genetic heterogeneity for plant translocation during ecological restoration. Ecology and Evolution. 11: 1100-1110. PMID 33598117 DOI: 10.1002/ece3.6978  0.343
2021 Shastry V, Adams PE, Lindtke D, Mandeville EG, Parchman TL, Gompert Z, Buerkle CA. Model-based genotype and ancestry estimation for potential hybrids with mixed-ploidy. Molecular Ecology Resources. PMID 33482035 DOI: 10.1111/1755-0998.13330  0.798
2020 Forister ML, Philbin CS, Marion ZH, Buerkle CA, Dodson CD, Fordyce JA, Forister GW, Lebeis SL, Lucas LK, Nice CC, Gompert Z. Predicting patch occupancy reveals the complexity of host range expansion. Science Advances. 6. PMID 33246956 DOI: 10.1126/sciadv.abc6852  0.607
2020 LaCava MEF, Gagne RB, Stowell SML, Gustafson KD, Buerkle CA, Knox L, Ernest HB. Pronghorn population genomics show connectivity in the core of their range. Journal of Mammalogy. 101: 1061-1071. PMID 33100929 DOI: 10.1093/Jmammal/Gyaa054  0.486
2020 Harrison JG, Calder WJ, Shuman B, Buerkle CA. The quest for absolute abundance: the use of internal standards for DNA-based community ecology. Molecular Ecology Resources. PMID 32889760 DOI: 10.1111/1755-0998.13247  0.761
2020 Forister ML, Yoon SA, Philbin CS, Dodson CD, Hart B, Harrison JG, Shelef O, Fordyce JA, Marion ZH, Nice CC, Richards LA, Buerkle CA, Gompert Z. Caterpillars on a phytochemical landscape: The case of alfalfa and the Melissa blue butterfly. Ecology and Evolution. 10: 4362-4374. PMID 32489603 DOI: 10.1002/Ece3.6203  0.774
2020 Chaturvedi S, Lucas LK, Buerkle CA, Fordyce JA, Forister ML, Nice CC, Gompert Z. Recent hybrids recapitulate ancient hybrid outcomes. Nature Communications. 11: 2179. PMID 32358487 DOI: 10.1038/S41467-020-15641-X  0.742
2020 Bresadola L, Link V, Buerkle CA, Lexer C, Wegmann D. Estimating and accounting for genotyping errors in RAD-seq experiments. Molecular Ecology Resources. PMID 32142201 DOI: 10.1111/1755-0998.13153  0.634
2019 Harrison JG, Calder WJ, Shastry V, Buerkle CA. Dirichlet-multinomial modelling outperforms alternatives for analysis of microbiome and other ecological count data. Molecular Ecology Resources. PMID 31872949 DOI: 10.1111/1755-0998.13128  0.769
2019 LaCava MEF, Aikens EO, Megna LC, Randolph G, Hubbard C, Buerkle CA. Accuracy of de novo assembly of DNA sequences from double-digest libraries varies substantially among software. Molecular Ecology Resources. PMID 31665547 DOI: 10.1111/1755-0998.13108  0.346
2019 Haselhorst MSH, Parchman TL, Buerkle CA. Genetic evidence for species cohesion, substructure and hybrids in spruce. Molecular Ecology. PMID 30801841 DOI: 10.1111/Mec.15056  0.789
2018 Crow TM, Albeke SE, Buerkle CA, Hufford KM. Provisional methods to guide species‐specific seed transfer in ecological restoration Ecosphere. 9. DOI: 10.1002/Ecs2.2059  0.329
2017 Mandeville EG, Parchman TL, Thompson KG, Compton RI, Gelwicks KR, Song SJ, Buerkle CA. Inconsistent reproductive isolation revealed by interactions between fish species. Evolution Letters. 1: 255-268. PMID 30283654 DOI: 10.1002/evl3.29  0.799
2017 Gompert Z, Mandeville EG, Buerkle CA. Analysis of Population Genomic Data from Hybrid Zones Annual Review of Ecology, Evolution, and Systematics. 48: 207-229. DOI: 10.1146/Annurev-Ecolsys-110316-022652  0.68
2016 Kingston SE, Parchman TL, Gompert Z, Buerkle CA, Braun MJ. Heterogeneity and concordance in locus-specific differentiation and introgression between species of towhees. Journal of Evolutionary Biology. PMID 28009485 DOI: 10.1111/Jeb.13033  0.705
2016 Parchman TL, Buerkle CA, Soria-Carrasco V, Benkman CW. Genome divergence and diversification within a geographic mosaic of coevolution. Molecular Ecology. PMID 27682183 DOI: 10.1111/Mec.13825  0.841
2016 Gompert Z, Buerkle CA. What, if anything, are hybrids: enduring truths and challenges associated with population structure and gene flow. Evolutionary Applications. 9: 909-23. PMID 27468308 DOI: 10.1111/Eva.12380  0.655
2016 Harrison JG, Gompert Z, Fordyce JA, Buerkle CA, Grinstead R, Jahner JP, Mikel S, Nice CC, Santamaria A, Forister ML. The Many Dimensions of Diet Breadth: Phytochemical, Genetic, Behavioral, and Physiological Perspectives on the Interaction between a Native Herbivore and an Exotic Host. Plos One. 11: e0147971. PMID 26836490 DOI: 10.1371/Journal.Pone.0147971  0.79
2016 Lucas LK, Gompert Z, Gibson JR, Bell KL, Buerkle CA, Nice CC. Pervasive gene flow across critical habitat for four narrowly endemic, sympatric taxa Freshwater Biology. 61: 933-946. DOI: 10.1111/Fwb.12758  0.655
2015 Lindtke D, Buerkle CA. The genetic architecture of hybrid incompatibilities and their effect on barriers to introgression in secondary contact. Evolution; International Journal of Organic Evolution. 69: 1987-2004. PMID 26174368 DOI: 10.1111/Evo.12725  0.536
2015 Gompert Z, Jahner JP, Scholl CF, Wilson JS, Lucas LK, Soria-Carrasco V, Fordyce JA, Nice CC, Buerkle CA, Forister ML. The evolution of novel host use is unlikely to be constrained by trade-offs or a lack of genetic variation. Molecular Ecology. 24: 2777-93. PMID 25877787 DOI: 10.1111/Mec.13199  0.809
2015 Mandeville EG, Parchman TL, McDonald DB, Buerkle CA. Highly variable reproductive isolation among pairs of Catostomus species. Molecular Ecology. 24: 1856-72. PMID 25703195 DOI: 10.1111/Mec.13118  0.798
2014 Gompert Z, Lucas LK, Buerkle CA, Forister ML, Fordyce JA, Nice CC. Admixture and the organization of genetic diversity in a butterfly species complex revealed through common and rare genetic variants. Molecular Ecology. 23: 4555-73. PMID 24866941 DOI: 10.1111/Mec.12811  0.796
2014 Soria-Carrasco V, Gompert Z, Comeault AA, Farkas TE, Parchman TL, Johnston JS, Buerkle CA, Feder JL, Bast J, Schwander T, Egan SP, Crespi BJ, Nosil P. Stick insect genomes reveal natural selection's role in parallel speciation. Science (New York, N.Y.). 344: 738-42. PMID 24833390 DOI: 10.1126/Science.1252136  0.827
2014 Lindtke D, Gompert Z, Lexer C, Buerkle CA. Unexpected ancestry of Populus seedlings from a hybrid zone implies a large role for postzygotic selection in the maintenance of species. Molecular Ecology. 23: 4316-30. PMID 24750473 DOI: 10.1111/Mec.12759  0.751
2014 Comeault AA, Soria-Carrasco V, Gompert Z, Farkas TE, Buerkle CA, Parchman TL, Nosil P. Genome-wide association mapping of phenotypic traits subject to a range of intensities of natural selection in Timema cristinae. The American Naturalist. 183: 711-27. PMID 24739202 DOI: 10.1086/675497  0.828
2014 Gompert Z, Comeault AA, Farkas TE, Feder JL, Parchman TL, Buerkle CA, Nosil P. Experimental evidence for ecological selection on genome variation in the wild. Ecology Letters. 17: 369-79. PMID 24354456 DOI: 10.1111/Ele.12238  0.83
2013 Gompert Z, Buerkle CA. Analyses of genetic ancestry enable key insights for molecular ecology. Molecular Ecology. 22: 5278-94. PMID 24103088 DOI: 10.1111/Mec.12488  0.712
2013 Gompert Z, Lucas LK, Nice CC, Buerkle CA. Genome divergence and the genetic architecture of barriers to gene flow between Lycaeides idas and L. Melissa. Evolution; International Journal of Organic Evolution. 67: 2498-514. PMID 24033163 DOI: 10.1111/Evo.12021  0.712
2013 Narum SR, Buerkle CA, Davey JW, Miller MR, Hohenlohe PA. Genotyping-by-sequencing in ecological and conservation genomics. Molecular Ecology. 22: 2841-7. PMID 23711105 DOI: 10.1111/Mec.12350  0.462
2013 Andrew RL, Bernatchez L, Bonin A, Buerkle CA, Carstens BC, Emerson BC, Garant D, Giraud T, Kane NC, Rogers SM, Slate J, Smith H, Sork VL, Stone GN, Vines TH, et al. A road map for molecular ecology. Molecular Ecology. 22: 2605-26. PMID 23611646 DOI: 10.1111/Mec.12319  0.767
2013 Nice CC, Gompert Z, Fordyce JA, Forister ML, Lucas LK, Buerkle CA. Hybrid speciation and independent evolution in lineages of alpine butterflies. Evolution; International Journal of Organic Evolution. 67: 1055-68. PMID 23550755 DOI: 10.1111/Evo.12019  0.779
2013 Parchman TL, Gompert Z, Braun MJ, Brumfield RT, McDonald DB, Uy JA, Zhang G, Jarvis ED, Schlinger BA, Buerkle CA. The genomic consequences of adaptive divergence and reproductive isolation between species of manakins. Molecular Ecology. 22: 3304-17. PMID 23441849 DOI: 10.1111/Mec.12201  0.681
2013 Abbott R, Albach D, Ansell S, Arntzen JW, Baird SJ, Bierne N, Boughman J, Brelsford A, Buerkle CA, Buggs R, Butlin RK, Dieckmann U, Eroukhmanoff F, Grill A, Cahan SH, et al. Hybridization and speciation. Journal of Evolutionary Biology. 26: 229-46. PMID 23323997 DOI: 10.1111/J.1420-9101.2012.02599.X  0.332
2013 Haselhorst MSH, Buerkle CA. Population genetic structure of Picea engelmannii, P. glauca and their previously unrecognized hybrids in the central Rocky Mountains Tree Genetics & Genomes. 9: 669-681. DOI: 10.1007/S11295-012-0583-7  0.456
2012 Lindtke D, Buerkle CA, Barbará T, Heinze B, Castiglione S, Bartha D, Lexer C. Recombinant hybrids retain heterozygosity at many loci: new insights into the genomics of reproductive isolation in Populus. Molecular Ecology. 21: 5042-58. PMID 22989336 DOI: 10.1111/J.1365-294X.2012.05744.X  0.703
2012 Gompert Z, Buerkle CA. bgc: Software for Bayesian estimation of genomic clines. Molecular Ecology Resources. 12: 1168-1176. PMID 22978657 DOI: 10.1111/1755-0998.12009.X  0.633
2012 Gompert Z, Lucas LK, Nice CC, Fordyce JA, Forister ML, Buerkle CA. Genomic regions with a history of divergent selection affect fitness of hybrids between two butterfly species. Evolution; International Journal of Organic Evolution. 66: 2167-81. PMID 22759293 DOI: 10.1111/J.1558-5646.2012.01587.X  0.789
2012 Nosil P, Gompert Z, Farkas TE, Comeault AA, Feder JL, Buerkle CA, Parchman TL. Genomic consequences of multiple speciation processes in a stick insect. Proceedings. Biological Sciences / the Royal Society. 279: 5058-65. PMID 22696527 DOI: 10.1098/Rspb.2012.0813  0.832
2012 Parchman TL, Gompert Z, Mudge J, Schilkey FD, Benkman CW, Buerkle CA. Genome-wide association genetics of an adaptive trait in lodgepole pine. Molecular Ecology. 21: 2991-3005. PMID 22404645 DOI: 10.1111/J.1365-294X.2012.05513.X  0.839
2012 Comeault AA, Sommers M, Schwander T, Buerkle CA, Farkas TE, Nosil P, Parchman TL. De novo characterization of the Timema cristinae transcriptome facilitates marker discovery and inference of genetic divergence. Molecular Ecology Resources. 12: 549-61. PMID 22339780 DOI: 10.1111/J.1755-0998.2012.03121.X  0.825
2012 Gompert Z, Parchman TL, Buerkle CA. Genomics of isolation in hybrids. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 367: 439-50. PMID 22201173 DOI: 10.1098/Rstb.2011.0196  0.83
2012 Lesser MR, Parchman TL, Buerkle CA. Cross-species transferability of SSR loci developed from transciptome sequencing in lodgepole pine. Molecular Ecology Resources. 12: 448-55. PMID 22171820 DOI: 10.1111/J.1755-0998.2011.03102.X  0.81
2011 Parchman TL, Benkman CW, Jenkins B, Buerkle CA. Low levels of population genetic structure in Pinus contorta (Pinaceae) across a geographic mosaic of co-evolution. American Journal of Botany. 98: 669-79. PMID 21613166 DOI: 10.3732/Ajb.1000378  0.814
2011 Gompert Z, Buerkle CA. Bayesian estimation of genomic clines. Molecular Ecology. 20: 2111-27. PMID 21453352 DOI: 10.1111/J.1365-294X.2011.05074.X  0.725
2011 Buerkle CA, Gompert Z, Parchman TL. The n = 1 constraint in population genomics. Molecular Ecology. 20: 1575-1581. PMID 21375635 DOI: 10.1111/J.1365-294X.2011.05046.X  0.65
2011 Gompert Z, Buerkle CA. A hierarchical Bayesian model for next-generation population genomics. Genetics. 187: 903-17. PMID 21212231 DOI: 10.1534/Genetics.110.124693  0.707
2011 Haselhorst MSH, Buerkle CA. Detection of Hybrids in Natural Populations of Picea Glauca and Picea Englemannii University of Wyoming National Park Service Research Center Annual Report. 33: 119-123. DOI: 10.13001/Uwnpsrc.2011.3801  0.341
2010 Lexer C, Joseph JA, van Loo M, Barbará T, Heinze B, Bartha D, Castiglione S, Fay MF, Buerkle CA. Genomic admixture analysis in European Populus spp. reveals unexpected patterns of reproductive isolation and mating. Genetics. 186: 699-712. PMID 20679517 DOI: 10.1534/Genetics.110.118828  0.724
2010 Gompert Z, Forister ML, Fordyce JA, Nice CC, Williamson RJ, Buerkle CA. Bayesian analysis of molecular variance in pyrosequences quantifies population genetic structure across the genome of Lycaeides butterflies. Molecular Ecology. 19: 2455-73. PMID 20497324 DOI: 10.1111/J.1365-294X.2010.04666.X  0.784
2010 Scascitelli M, Whitney KD, Randell RA, King M, Buerkle CA, Rieseberg LH. Genome scan of hybridizing sunflowers from Texas (Helianthus annuus and H. debilis) reveals asymmetric patterns of introgression and small islands of genomic differentiation. Molecular Ecology. 19: 521-41. PMID 20355258 DOI: 10.1111/J.1365-294X.2009.04504.X  0.574
2010 Parchman TL, Geist KS, Grahnen JA, Benkman CW, Buerkle CA. Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery. Bmc Genomics. 11: 180. PMID 20233449 DOI: 10.1186/1471-2164-11-180  0.826
2010 Teeter KC, Thibodeau LM, Gompert Z, Buerkle CA, Nachman MW, Tucker PK. The variable genomic architecture of isolation between hybridizing species of house mice. Evolution; International Journal of Organic Evolution. 64: 472-85. PMID 19796152 DOI: 10.1111/J.1558-5646.2009.00846.X  0.733
2009 Nolte AW, Gompert Z, Buerkle CA. Variable patterns of introgression in two sculpin hybrid zones suggest that genomic isolation differs among populations. Molecular Ecology. 18: 2615-27. PMID 19457191 DOI: 10.1111/J.1365-294X.2009.04208.X  0.715
2009 Buerkle CA. Ecological context shapes hybridization dynamics. Molecular Ecology. 18: 2077-9. PMID 19302358 DOI: 10.1111/J.1365-294X.2009.04138.X  0.463
2009 Gompert Z, Buerkle CA. A powerful regression-based method for admixture mapping of isolation across the genome of hybrids. Molecular Ecology. 18: 1207-24. PMID 19243513 DOI: 10.1111/J.1365-294X.2009.04098.X  0.707
2008 Buerkle CA, Lexer C. Admixture as the basis for genetic mapping. Trends in Ecology & Evolution. 23: 686-94. PMID 18845358 DOI: 10.1016/J.Tree.2008.07.008  0.649
2008 Buerkle CA, Rieseberg LH. The rate of genome stabilization in homoploid hybrid species. Evolution; International Journal of Organic Evolution. 62: 266-75. PMID 18039323 DOI: 10.1111/J.1558-5646.2007.00267.X  0.612
2007 Lexer C, Buerkle CA, Joseph JA, Heinze B, Fay MF. Admixture in European Populus hybrid zones makes feasible the mapping of loci that contribute to reproductive isolation and trait differences. Heredity. 98: 74-84. PMID 16985509 DOI: 10.1038/Sj.Hdy.6800898  0.655
2005 Buerkle CA. Maximum‐likelihood estimation of a hybrid index based on molecular markers Molecular Ecology Notes. 5: 684-687. DOI: 10.1111/J.1471-8286.2005.01011.X  0.397
2002 Rieseberg LH, Buerkle CA. Genetic mapping in hybrid zones. The American Naturalist. 159: S36-50. PMID 18707368 DOI: 10.1086/338371  0.578
2001 Peichel CL, Nereng KS, Ohgi KA, Cole BL, Colosimo PF, Buerkle CA, Schluter D, Kingsley DM. The genetic architecture of divergence between threespine stickleback species. Nature. 414: 901-5. PMID 11780061 DOI: 10.1038/414901A  0.483
2001 Buerkle CA, Rieseberg LH. Low intraspecific variation for genomic isolation between hybridizing sunflower species. Evolution; International Journal of Organic Evolution. 55: 684-91. PMID 11392386 DOI: 10.1554/0014-3820(2001)055[0684:Livfgi]2.0.Co;2  0.639
2000 Buerkle CA, Morris RJ, Asmussen MA, Rieseberg LH. The likelihood of homoploid hybrid speciation. Heredity. 84: 441-51. PMID 10849068 DOI: 10.1046/J.1365-2540.2000.00680.X  0.553
2000 Buerkle CA. Morphological Variation Among Migratory And Non- Migratory Populations Of Prairie Warblers The Wilson Journal of Ornithology. 112: 99-107. DOI: 10.1676/0043-5643(2000)112[0099:Mvaman]2.0.Co;2  0.332
1999 Buerkle CA. THE HISTORICAL PATTERN OF GENE FLOW AMONG MIGRATORY AND NONMIGRATORY POPULATIONS OF PRAIRIE WARBLERS (AVES: PARULINAE). Evolution; International Journal of Organic Evolution. 53: 1915-1924. PMID 28565451 DOI: 10.1111/J.1558-5646.1999.Tb04572.X  0.408
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