| Year |
Citation |
Score |
| 2024 |
Faherty L, Zhang WZ, Salih MM, Robinson EK, Perez E, Kim K, Carpenter S, Cloonan SM. Transcriptomic analysis reveals distinct effects of cigarette smoke on murine airspace and bone-marrow derived macrophages. Respiratory Research. 25: 322. PMID 39182076 DOI: 10.1186/s12931-024-02939-3 |
0.675 |
|
| 2024 |
Montano C, Covarrubias S, Malekos E, Katzman S, Carpenter S. Identification and Functional Characterization of lncRNAs involved in Human Monocyte-to-Macrophage Differentiation. Biorxiv : the Preprint Server For Biology. PMID 38979363 DOI: 10.1101/2024.06.20.599925 |
0.408 |
|
| 2024 |
Halasz H, Malekos E, Covarrubias S, Yitiz S, Montano C, Sudek L, Katzman S, Liu SJ, Horlbeck MA, Namvar L, Weissman JS, Carpenter S. CRISPRi screens identify the lncRNA, , as a multifunctional locus regulating macrophage differentiation and inflammatory signaling. Proceedings of the National Academy of Sciences of the United States of America. 121: e2322524121. PMID 38781216 DOI: 10.1073/pnas.2322524121 |
0.531 |
|
| 2024 |
Montano C, Flores-Arenas C, Carpenter S. LncRNAs, nuclear architecture and the immune response. Nucleus (Austin, Tex.). 15: 2350182. PMID 38738760 DOI: 10.1080/19491034.2024.2350182 |
0.462 |
|
| 2024 |
Carpenter S, O'Neill LAJ. From periphery to center stage: 50 years of advancements in innate immunity. Cell. 187: 2030-2051. PMID 38670064 DOI: 10.1016/j.cell.2024.03.036 |
0.312 |
|
| 2024 |
John K, Huntress I, Smith E, Chou H, Tollison TS, Covarrubias S, Crisci E, Carpenter S, Peng X. Human long noncoding RNA, is induced by major respiratory viral infections and modulates the host interferon response. Biorxiv : the Preprint Server For Biology. PMID 38585942 DOI: 10.1101/2024.03.25.586578 |
0.337 |
|
| 2024 |
Azam S, Armijo KS, Weindel CG, Chapman MJ, Devigne A, Nakagawa S, Hirose T, Carpenter S, Watson RO, Patrick KL. The early macrophage response to pathogens requires dynamic regulation of the nuclear paraspeckle. Proceedings of the National Academy of Sciences of the United States of America. 121: e2312587121. PMID 38381785 DOI: 10.1073/pnas.2312587121 |
0.513 |
|
| 2023 |
Martin EW, Rodriguez Y Baena A, Reggiardo RE, Worthington AK, Mattingly CS, Poscablo DM, Krietsch J, McManus MT, Carpenter S, Kim DH, Forsberg EC. Dynamics of Chromatin Accessibility during Hematopoietic Stem Cell Differentiation into Progressively Lineage-Committed Progeny. Stem Cells (Dayton, Ohio). PMID 36945732 DOI: 10.1093/stmcls/sxad022 |
0.539 |
|
| 2023 |
Salih MM, Robinson EK, Malekos E, Perez E, Capili A, Kim K, Zhang WZ, Cloonan SM, Carpenter S. Regulates Smoke-induced Inflammation in Murine Macrophages. American Journal of Respiratory Cell and Molecular Biology. PMID 36657060 DOI: 10.1165/rcmb.2022-0413OC |
0.727 |
|
| 2023 |
Mattick JS, Amaral PP, Carninci P, Carpenter S, Chang HY, Chen LL, Chen R, Dean C, Dinger ME, Fitzgerald KA, Gingeras TR, Guttman M, Hirose T, Huarte M, Johnson R, et al. Long non-coding RNAs: definitions, functions, challenges and recommendations. Nature Reviews. Molecular Cell Biology. PMID 36596869 DOI: 10.1038/s41580-022-00566-8 |
0.396 |
|
| 2022 |
Malekos E, Carpenter S. Short open reading frame genes in innate immunity: from discovery to characterization. Trends in Immunology. PMID 35965152 DOI: 10.1016/j.it.2022.07.005 |
0.391 |
|
| 2022 |
Robinson EK, Worthington A, Poscablo D, Shapleigh B, Salih MM, Halasz H, Seninge L, Mosqueira B, Smaliy V, Forsberg EC, Carpenter S. Functions to Regulate Inflammation in Alveolar Macrophages during Acute Lung Injury. Journal of Immunology (Baltimore, Md. : 1950). PMID 35365562 DOI: 10.4049/jimmunol.2100743 |
0.761 |
|
| 2022 |
Halasz H, Carpenter S. Challenges and Future Directions for LncRNAs and Inflammation. Advances in Experimental Medicine and Biology. 1363: 179-183. PMID 35220571 DOI: 10.1007/978-3-030-92034-0_10 |
0.332 |
|
| 2022 |
Vollmers A, Carpenter S. Introduction and Overview. Advances in Experimental Medicine and Biology. 1363: 3-8. PMID 35220562 DOI: 10.1007/978-3-030-92034-0_1 |
0.792 |
|
| 2022 |
Gu L, Casserly D, Brady G, Carpenter S, Bracken AP, Fitzgerald KA, Unterholzner L, Bowie AG. Myeloid cell nuclear differentiation antigen controls the pathogen-stimulated type I interferon cascade in human monocytes by transcriptional regulation of IRF7. Nature Communications. 13: 14. PMID 35013241 DOI: 10.1038/s41467-021-27701-x |
0.436 |
|
| 2021 |
Mohammed Salih M, Carpenter S. What sequencing technologies can teach us about innate immunity. Immunological Reviews. PMID 34747035 DOI: 10.1111/imr.13033 |
0.407 |
|
| 2021 |
Robinson EK, Jagannatha P, Covarrubias S, Cattle M, Smaliy V, Safavi R, Shapleigh B, Abu-Shumays R, Jain M, Cloonan SM, Akeson M, Brooks AN, Carpenter S. Inflammation drives alternative first exon usage to regulate immune genes including a novel iron regulated isoform of Aim2. Elife. 10. PMID 34047695 DOI: 10.7554/eLife.69431 |
0.76 |
|
| 2021 |
Vollmers AC, Mekonen HE, Campos S, Carpenter S, Vollmers C. Generation of an Isoform-level transcriptome Atlas of Macrophage Activation. The Journal of Biological Chemistry. 100784. PMID 34000296 DOI: 10.1016/j.jbc.2021.100784 |
0.8 |
|
| 2021 |
Robinson EK, Covarrubias S, Zhou S, Carpenter S. Generation and utilization of a HEK-293T murine GM-CSF expressing cell line. Plos One. 16: e0249117. PMID 33836009 DOI: 10.1371/journal.pone.0249117 |
0.688 |
|
| 2021 |
Vollmers AC, Covarrubias S, Kuang D, Shulkin A, Iwuagwu J, Katzman S, Song R, Viswanathan K, Vollmers C, Wakeland E, Carpenter S. A conserved long noncoding RNA, GAPLINC, modulates the immune response during endotoxic shock. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33568531 DOI: 10.1073/pnas.2016648118 |
0.815 |
|
| 2020 |
Covarrubias S, Vollmers AC, Capili A, Boettcher M, Shulkin A, Correa MR, Halasz H, Robinson EK, O'Briain L, Vollmers C, Blau J, Katzman S, McManus MT, Carpenter S. High-Throughput CRISPR Screening Identifies Genes Involved in Macrophage Viability and Inflammatory Pathways. Cell Reports. 33: 108541. PMID 33378675 DOI: 10.1016/j.celrep.2020.108541 |
0.674 |
|
| 2020 |
Bouchareychas L, Duong P, Covarrubias S, Alsop E, Phu TA, Chung A, Gomes M, Wong D, Meechoovet B, Capili A, Yamamoto R, Nakauchi H, McManus MT, Carpenter S, Van Keuren-Jensen K, et al. Macrophage Exosomes Resolve Atherosclerosis by Regulating Hematopoiesis and Inflammation via MicroRNA Cargo. Cell Reports. 32: 107881. PMID 32668250 DOI: 10.1016/J.Celrep.2020.107881 |
0.599 |
|
| 2019 |
Hennessy EJ, van Solingen C, Scacalossi KR, Ouimet M, Afonso MS, Prins J, Koelwyn GJ, Sharma M, Ramkhelawon B, Carpenter S, Busch A, Chernogubova E, Matic LP, Hedin U, Maegdefessel L, et al. The long noncoding RNA CHROME regulates cholesterol homeostasis in primates. Nature Metabolism. 1: 98-110. PMID 32694807 DOI: 10.1038/s42255-018-0004-9 |
0.3 |
|
| 2019 |
Robinson EK, Covarrubias S, Carpenter S. The how and why of lncRNA function: An innate immune perspective. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 194419. PMID 31487549 DOI: 10.1016/J.Bbagrm.2019.194419 |
0.772 |
|
| 2019 |
Hennessy EJ, van Solingen C, Scacalossi KR, Ouimet M, Afonso MS, Prins J, Koelwyn GJ, Sharma M, Ramkhelawon B, Carpenter S, Busch A, Chernogubova E, Matic LP, Hedin U, Maegdefessel L, et al. The long noncoding RNA CHROME regulates cholesterol homeostasis in primate. Nature Metabolism. 1: 98-110. PMID 31410392 DOI: 10.1038/s42255-018-0004-9 |
0.308 |
|
| 2019 |
Galván-Peña S, Carroll RG, Newman C, Hinchy EC, Palsson-McDermott E, Robinson EK, Covarrubias S, Nadin A, James AM, Haneklaus M, Carpenter S, Kelly VP, Murphy MP, Modis LK, O'Neill LA. Malonylation of GAPDH is an inflammatory signal in macrophages. Nature Communications. 10: 338. PMID 30659183 DOI: 10.1038/S41467-018-08187-6 |
0.738 |
|
| 2018 |
Elling R, Robinson EK, Shapleigh B, Liapis SC, Covarrubias S, Katzman S, Groff AF, Jiang Z, Agarwal S, Motwani M, Chan J, Sharma S, Hennessy EJ, FitzGerald GA, McManus MT, ... ... Carpenter S, et al. Genetic Models Reveal cis and trans Immune-Regulatory Activities for lincRNA-Cox2. Cell Reports. 25: 1511-1524.e6. PMID 30404006 DOI: 10.1016/J.Celrep.2018.10.027 |
0.824 |
|
| 2018 |
Poirier EZ, Goic B, Tomé-Poderti L, Frangeul L, Boussier J, Gausson V, Blanc H, Vallet T, Loyd H, Levi LI, Lanciano S, Baron C, Merkling SH, Lambrechts L, Mirouze M, ... Carpenter S, et al. Dicer-2-Dependent Generation of Viral DNA from Defective Genomes of RNA Viruses Modulates Antiviral Immunity in Insects. Cell Host & Microbe. PMID 29503180 DOI: 10.1016/J.Chom.2018.02.001 |
0.321 |
|
| 2017 |
Covarrubias S, Robinson EK, Shapleigh B, Vollmers A, Katzman S, Hanley N, Fong N, McManus MT, Carpenter S. CRISPR/Cas9-based screening of long noncoding RNAs (lncRNAs) in macrophages with an NF-kappa B reporter. The Journal of Biological Chemistry. PMID 29051223 DOI: 10.1074/Jbc.M117.799155 |
0.771 |
|
| 2017 |
Ghosh S, Wallerath C, Covarrubias S, Hornung V, Carpenter S, Fitzgerald KA. The PYHIN Protein p205 Regulates the Inflammasome by Controlling Asc Expression. Journal of Immunology (Baltimore, Md. : 1950). PMID 28931603 DOI: 10.4049/Jimmunol.1700823 |
0.494 |
|
| 2017 |
Carpenter S, Fitzgerald KA. Cytokines and Long Noncoding RNAs. Cold Spring Harbor Perspectives in Biology. PMID 28716885 DOI: 10.1101/Cshperspect.A028589 |
0.623 |
|
| 2016 |
Akula MK, Shi M, Jiang Z, Foster CE, Miao D, Li AS, Zhang X, Gavin RM, Forde SD, Germain G, Carpenter S, Rosadini CV, Gritsman K, Chae JJ, Hampton R, et al. Control of the innate immune response by the mevalonate pathway. Nature Immunology. PMID 27270400 DOI: 10.1038/Ni.3487 |
0.419 |
|
| 2016 |
Carpenter S. Determining the Function of Long Noncoding RNA in Innate Immunity. Methods in Molecular Biology (Clifton, N.J.). 1390: 183-95. PMID 26803630 DOI: 10.1007/978-1-4939-3335-8_12 |
0.572 |
|
| 2016 |
Carpenter S. Long noncoding RNA: Novel links between gene expression and innate immunity. Virus Research. 212: 137-45. PMID 26362525 DOI: 10.1016/J.Virusres.2015.08.019 |
0.547 |
|
| 2016 |
Carpenter S. Long noncoding RNA: Novel links between gene expression and innate immunity Virus Research. 212: 137-145. DOI: 10.1016/j.virusres.2015.08.019 |
0.456 |
|
| 2015 |
Carpenter S. Editorial: Functions of Non-Coding RNA in Innate Immunity. Frontiers in Immunology. 6: 622. PMID 26697016 DOI: 10.3389/Fimmu.2015.00622 |
0.504 |
|
| 2015 |
Chan J, Atianand M, Jiang Z, Carpenter S, Aiello D, Elling R, Fitzgerald KA, Caffrey DR. Cutting Edge: A Natural Antisense Transcript, AS-IL1α, Controls Inducible Transcription of the Proinflammatory Cytokine IL-1α. Journal of Immunology (Baltimore, Md. : 1950). PMID 26179904 DOI: 10.4049/Jimmunol.1500264 |
0.428 |
|
| 2015 |
Baum R, Sharma S, Carpenter S, Li QZ, Busto P, Fitzgerald KA, Marshak-Rothstein A, Gravallese EM. Cutting edge: AIM2 and endosomal TLRs differentially regulate arthritis and autoantibody production in DNase II-deficient mice. Journal of Immunology (Baltimore, Md. : 1950). 194: 873-7. PMID 25548216 DOI: 10.4049/Jimmunol.1402573 |
0.366 |
|
| 2015 |
Carpenter S, Fitzgerald KA. Transcription of inflammatory genes: long noncoding RNA and beyond. Journal of Interferon & Cytokine Research : the Official Journal of the International Society For Interferon and Cytokine Research. 35: 79-88. PMID 25250698 DOI: 10.1089/jir.2014.0120 |
0.522 |
|
| 2015 |
Carpenter S. Editorial: Functions of non-coding RNA in innate immunity Frontiers in Immunology. 6. DOI: 10.3389/fimmu.2015.00622 |
0.334 |
|
| 2015 |
Carpenter S. Determining the function of long noncoding rna in innate immunity Methods in Molecular Biology. 1390: 183-195. DOI: 10.1007/978-1-4939-3335-8_12 |
0.471 |
|
| 2014 |
Wochal P, Rathinam VA, Dunne A, Carlson T, Kuang W, Seidl KJ, Hall JP, Lin LL, Collins M, Schattgen SA, MacKay CR, Fagundes CT, Carpenter S, Fitzgerald KA, O'Neill LA. TRIL is involved in cytokine production in the brain following Escherichia coli infection. Journal of Immunology (Baltimore, Md. : 1950). 193: 1911-9. PMID 25015823 DOI: 10.4049/jimmunol.1302392 |
0.331 |
|
| 2014 |
Thompson MR, Sharma S, Atianand M, Jensen SB, Carpenter S, Knipe DM, Fitzgerald KA, Kurt-Jones EA. Interferon γ-inducible protein (IFI) 16 transcriptionally regulates type i interferons and other interferon-stimulated genes and controls the interferon response to both DNA and RNA viruses. The Journal of Biological Chemistry. 289: 23568-81. PMID 25002588 DOI: 10.1074/Jbc.M114.554147 |
0.389 |
|
| 2014 |
Hangauer MJ, Carpenter S, McManus MT. Discovering the complexity of the metazoan transcriptome. Genome Biology. 15: 112. PMID 25001157 DOI: 10.1186/Gb4172 |
0.754 |
|
| 2014 |
Carpenter S, Ricci EP, Mercier BC, Moore MJ, Fitzgerald KA. Post-transcriptional regulation of gene expression in innate immunity. Nature Reviews. Immunology. 14: 361-76. PMID 24854588 DOI: 10.1038/Nri3682 |
0.543 |
|
| 2013 |
Carpenter S, Aiello D, Atianand MK, Ricci EP, Gandhi P, Hall LL, Byron M, Monks B, Henry-Bezy M, Lawrence JB, O'Neill LA, Moore MJ, Caffrey DR, Fitzgerald KA. A long noncoding RNA mediates both activation and repression of immune response genes. Science (New York, N.Y.). 341: 789-92. PMID 23907535 DOI: 10.1126/Science.1240925 |
0.599 |
|
| 2013 |
Doyle SL, Shirey KA, McGettrick AF, Kenny EF, Carpenter S, Caffrey BE, Gargan S, Quinn SR, Caamaño JH, Moynagh P, Vogel SN, O'Neill LA. Nuclear factor κB2 p52 protein has a role in antiviral immunity through IκB kinase epsilon-dependent induction of Sp1 protein and interleukin 15. The Journal of Biological Chemistry. 288: 25066-75. PMID 23873932 DOI: 10.1074/Jbc.M113.469122 |
0.351 |
|
| 2013 |
Carpenter S, Atianand M, Aiello D, Ricci E, Gandhi P, Hall LL, Byron M, Monks B, Henry-Bezy M, O’Neill LA, B.Lawrence J, Moore MJ, Caffrey DR, Fitzgerald KA. 34 Cytokine. 63: 251. DOI: 10.1016/J.Cyto.2013.06.037 |
0.646 |
|
| 2011 |
Carpenter S, Wochal P, Dunne A, O'Neill LA. Toll-like receptor 3 (TLR3) signaling requires TLR4 Interactor with leucine-rich REPeats (TRIL). The Journal of Biological Chemistry. 286: 38795-804. PMID 21911501 DOI: 10.1074/Jbc.M111.255893 |
0.426 |
|
| 2010 |
Dunne A, Carpenter S, Brikos C, Gray P, Strelow A, Wesche H, Morrice N, O'Neill LA. IRAK1 and IRAK4 promote phosphorylation, ubiquitination, and degradation of MyD88 adaptor-like (Mal). The Journal of Biological Chemistry. 285: 18276-82. PMID 20400509 DOI: 10.1074/Jbc.M109.098137 |
0.356 |
|
| 2009 |
Carpenter S, Carlson T, Dellacasagrande J, Garcia A, Gibbons S, Hertzog P, Lyons A, Lin LL, Lynch M, Monie T, Murphy C, Seidl KJ, Wells C, Dunne A, O'Neill LA. TRIL, a functional component of the TLR4 signaling complex, highly expressed in brain. Journal of Immunology (Baltimore, Md. : 1950). 183: 3989-95. PMID 19710467 DOI: 10.4049/Jimmunol.0901518 |
0.44 |
|
| 2009 |
Carpenter S, O'Neill LA. Recent insights into the structure of Toll-like receptors and post-translational modifications of their associated signalling proteins. The Biochemical Journal. 422: 1-10. PMID 19627256 DOI: 10.1042/Bj20090616 |
0.393 |
|
| 2009 |
Carlson T, Carpenter S, Gao Y, Percival K, Schelling SH, Hewet AG, Kuang W, Reddy P, Goodwin DG, Nickerson-Nutter C, Senices M, Young D, Bradley L, Lin L, Clark JD, et al. TRIL is a novel modulator of TLR4 with enriched expression in the brain Cytokine. 48: 57. DOI: 10.1016/J.Cyto.2009.07.175 |
0.341 |
|
| 2008 |
McCoy CE, Carpenter S, PÃ¥lsson-McDermott EM, Gearing LJ, O'Neill LA. Glucocorticoids inhibit IRF3 phosphorylation in response to Toll-like receptor-3 and -4 by targeting TBK1 activation. The Journal of Biological Chemistry. 283: 14277-85. PMID 18356163 DOI: 10.1074/Jbc.M709731200 |
0.458 |
|
| 2007 |
Carpenter S, O'Neill LA. How important are Toll-like receptors for antimicrobial responses? Cellular Microbiology. 9: 1891-901. PMID 17521328 DOI: 10.1111/J.1462-5822.2007.00965.X |
0.413 |
|
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