| Year |
Citation |
Score |
| 2024 |
Yadav M, Harding RJ, Li T, Xu X, Gall-Duncan T, Khan M, Bardile CF, Sequiera GL, Duan S, Chandrasekaran R, Pan A, Bu J, Yamazaki T, Hirose T, Prinos P, et al. Huntingtin is an RNA binding protein and participates in -mediated paraspeckles. Science Advances. 10: eado5264. PMID 39028820 DOI: 10.1126/sciadv.ado5264 |
0.401 |
|
| 2024 |
Taniguchi I, Hirose T, Ohno M. The RNA helicase DDX39 contributes to the nuclear export of spliceosomal U snRNA by loading of PHAX onto RNA. Nucleic Acids Research. PMID 39011894 DOI: 10.1093/nar/gkae622 |
0.413 |
|
| 2023 |
Yoshimoto R, Nakayama Y, Nomura I, Yamamoto I, Nakagawa Y, Tanaka S, Kurihara M, Suzuki Y, Kobayashi T, Kozuka-Hata H, Oyama M, Mito M, Iwasaki S, Yamazaki T, Hirose T, et al. 4.5SH RNA counteracts deleterious exonization of SINE B1 in mice. Molecular Cell. 83: 4479-4493.e6. PMID 38096826 DOI: 10.1016/j.molcel.2023.11.019 |
0.411 |
|
| 2023 |
Yamamoto T, Yamazaki T, Ninomiya K, Hirose T. Nascent ribosomal RNA act as surfactant that suppresses growth of fibrillar centers in nucleolus. Communications Biology. 6: 1129. PMID 37935838 DOI: 10.1038/s42003-023-05519-1 |
0.381 |
|
| 2023 |
Takakuwa H, Yamazaki T, Souquere S, Adachi S, Yoshino H, Fujiwara N, Yamamoto T, Natsume T, Nakagawa S, Pierron G, Hirose T. Shell protein composition specified by the lncRNA NEAT1 domains dictates the formation of paraspeckles as distinct membraneless organelles. Nature Cell Biology. 25: 1664-1675. PMID 37932453 DOI: 10.1038/s41556-023-01254-1 |
0.374 |
|
| 2023 |
Obuse C, Hirose T. Functional domains of nuclear long noncoding RNAs: Insights into gene regulation and intracellular architecture. Current Opinion in Cell Biology. 85: 102250. PMID 37806294 DOI: 10.1016/j.ceb.2023.102250 |
0.395 |
|
| 2023 |
Ninomiya K, Yamazaki T, Hirose T. Satellite RNAs: emerging players in subnuclear architecture and gene regulation. The Embo Journal. e114331. PMID 37526230 DOI: 10.15252/embj.2023114331 |
0.424 |
|
| 2023 |
Zeng C, Chujo T, Hirose T, Hamada M. Landscape of semi-extractable RNAs across five human cell lines. Nucleic Acids Research. PMID 37463833 DOI: 10.1093/nar/gkad567 |
0.331 |
|
| 2023 |
Mattick JS, Amaral PP, Carninci P, Carpenter S, Chang HY, Chen LL, Chen R, Dean C, Dinger ME, Fitzgerald KA, Gingeras TR, Guttman M, Hirose T, Huarte M, Johnson R, et al. Long non-coding RNAs: definitions, functions, challenges and recommendations. Nature Reviews. Molecular Cell Biology. PMID 36596869 DOI: 10.1038/s41580-022-00566-8 |
0.417 |
|
| 2022 |
Gast M, Nageswaran V, Kuss AW, Tzvetkova A, Wang X, Mochmann LH, Rad PR, Weiss S, Simm S, Zeller T, Voelzke H, Hoffmann W, Völker U, Felix SB, Dörr M, ... ... Hirose T, et al. tRNA-like Transcripts from the Genomic Region Critically Influence Human Innate Immunity and Macrophage Functions. Cells. 11. PMID 36552736 DOI: 10.3390/cells11243970 |
0.314 |
|
| 2022 |
Hirose T, Ninomiya K, Nakagawa S, Yamazaki T. A guide to membraneless organelles and their various roles in gene regulation. Nature Reviews. Molecular Cell Biology. PMID 36424481 DOI: 10.1038/s41580-022-00558-8 |
0.332 |
|
| 2022 |
Iwakiri J, Tanaka K, Chujo T, Takakuwa H, Yamazaki T, Terai G, Asai K, Hirose T. Remarkable improvement in detection of readthrough downstream-of-gene transcripts by semi-extractable RNA-sequencing. Rna (New York, N.Y.). PMID 36384963 DOI: 10.1261/rna.079469.122 |
0.333 |
|
| 2022 |
Yamazaki T, Yamamoto T, Hirose T. Micellization: A new principle in the formation of biomolecular condensates. Frontiers in Molecular Biosciences. 9: 974772. PMID 36106018 DOI: 10.3389/fmolb.2022.974772 |
0.359 |
|
| 2022 |
Yamamoto T, Yamazaki T, Hirose T. Triblock copolymer micelle model of spherical paraspeckles. Frontiers in Molecular Biosciences. 9: 925058. PMID 36072433 DOI: 10.3389/fmolb.2022.925058 |
0.344 |
|
| 2021 |
Cable J, Heard E, Hirose T, Prasanth KV, Chen LL, Henninger JE, Quinodoz SA, Spector DL, Diermeier SD, Porman AM, Kumar D, Feinberg MW, Shen X, Unfried JP, Johnson R, et al. Noncoding RNAs: biology and applications-a Keystone Symposia report. Annals of the New York Academy of Sciences. PMID 34791665 DOI: 10.1111/nyas.14713 |
0.38 |
|
| 2021 |
Mannen T, Goto M, Yoshizawa T, Yamashita A, Hirose T, Hayano T. Distinct RNA polymerase transcripts direct the assembly of phase-separated DBC1 nuclear bodies in different cell lines. Molecular Biology of the Cell. mbcE21020081. PMID 34495685 DOI: 10.1091/mbc.E21-02-0081 |
0.428 |
|
| 2021 |
Fukumura K, Yoshimoto R, Sperotto L, Kang HS, Hirose T, Inoue K, Sattler M, Mayeda A. SPF45/RBM17-dependent, but not U2AF-dependent, splicing in a distinct subset of human short introns. Nature Communications. 12: 4910. PMID 34389706 DOI: 10.1038/s41467-021-24879-y |
0.416 |
|
| 2021 |
Ninomiya K, Iwakiri J, Aly MK, Sakaguchi Y, Adachi S, Natsume T, Terai G, Asai K, Suzuki T, Hirose T. m A modification of HSATIII lncRNAs regulates temperature-dependent splicing. The Embo Journal. e107976. PMID 34184765 DOI: 10.15252/embj.2021107976 |
0.31 |
|
| 2021 |
Nakagawa S, Yamazaki T, Mannen T, Hirose T. ArcRNAs and the formation of nuclear bodies. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 34085114 DOI: 10.1007/s00335-021-09881-5 |
0.36 |
|
| 2021 |
Shibata T, Nagano K, Ueyama M, Ninomiya K, Hirose T, Nagai Y, Ishikawa K, Kawai G, Nakatani K. Small molecule targeting r(UGGAA) disrupts RNA foci and alleviates disease phenotype in Drosophila model. Nature Communications. 12: 236. PMID 33431896 DOI: 10.1038/s41467-020-20487-4 |
0.343 |
|
| 2021 |
Yamazaki T, Hirose T. CRISPR-Mediated Mutagenesis of Long Noncoding RNAs. Methods in Molecular Biology (Clifton, N.J.). 2254: 283-303. PMID 33326083 DOI: 10.1007/978-1-0716-1158-6_18 |
0.384 |
|
| 2020 |
Ramilowski JA, Yip CW, Agrawal S, Chang JC, Ciani Y, Kulakovskiy IV, Mendez M, Ooi JLC, Ouyang JF, Parkinson N, Petri A, Roos L, Severin J, Yasuzawa K, Abugessaisa I, ... ... Hirose T, et al. Functional annotation of human long noncoding RNAs via molecular phenotyping. Genome Research. PMID 32718982 DOI: 10.1101/Gr.254219.119 |
0.344 |
|
| 2020 |
Ninomiya K, Hirose T. Short Tandem Repeat-Enriched Architectural RNAs in Nuclear Bodies: Functions and Associated Diseases. Non-Coding Rna. 6. PMID 32093161 DOI: 10.3390/ncrna6010006 |
0.414 |
|
| 2020 |
Yamazaki T, Nakagawa S, Hirose T. Architectural RNAs for Membraneless Nuclear Body Formation. Cold Spring Harbor Symposia On Quantitative Biology. PMID 32019862 DOI: 10.1101/Sqb.2019.84.039404 |
0.389 |
|
| 2020 |
Ramilowski JA, Yip CW, Agrawal S, Chang J, Ciani Y, Kulakovskiy IV, Mendez M, Ooi JLC, Ouyang JF, Parkinson N, Petri A, Roos L, Severin J, Yasuzawa K, Abugessaisa I, ... ... Hirose T, et al. Corrigendum: Functional annotation of human long noncoding RNAs via molecular phenotyping Genome Research. 30: 1377-1-1377-1. DOI: 10.1101/Gr.270330.120 |
0.31 |
|
| 2019 |
Aly MK, Ninomiya K, Adachi S, Natsume T, Hirose T. Two distinct nuclear stress bodies containing different sets of RNA-binding proteins are formed with HSATIII architectural noncoding RNAs upon thermal stress exposure. Biochemical and Biophysical Research Communications. 516: 419-423. PMID 31227213 DOI: 10.1016/j.bbrc.2019.06.061 |
0.312 |
|
| 2019 |
Modic M, Grosch M, Rot G, Schirge S, Lepko T, Yamazaki T, Lee FCY, Rusha E, Shaposhnikov D, Palo M, Merl-Pham J, Cacchiarelli D, Rogelj B, Hauck SM, von Mering C, ... ... Hirose T, et al. Cross-Regulation between TDP-43 and Paraspeckles Promotes Pluripotency-Differentiation Transition. Molecular Cell. PMID 31047794 DOI: 10.1016/J.Molcel.2019.03.041 |
0.348 |
|
| 2019 |
Hirose T, Yamazaki T, Nakagawa S. Molecular anatomy of the architectural NEAT1 noncoding RNA: The domains, interactors, and biogenesis pathway required to build phase-separated nuclear paraspeckles. Wiley Interdisciplinary Reviews. Rna. e1545. PMID 31044562 DOI: 10.1002/Wrna.1545 |
0.457 |
|
| 2019 |
Katsel P, Roussos P, Fam P, Khan S, Tan W, Hirose T, Nakagawa S, Pletnikov MV, Haroutunian V. The expression of long noncoding RNA NEAT1 is reduced in schizophrenia and modulates oligodendrocytes transcription. Npj Schizophrenia. 5: 3. PMID 30696826 DOI: 10.1038/s41537-019-0071-2 |
0.309 |
|
| 2018 |
Nakagawa S, Yamazaki T, Hirose T. Molecular dissection of nuclear paraspeckles: towards understanding the emerging world of the RNP milieu. Open Biology. 8. PMID 30355755 DOI: 10.1098/Rsob.180150 |
0.37 |
|
| 2018 |
Yamazaki T, Fujikawa C, Kubota A, Takahashi A, Hirose T. CRISPRa-mediated NEAT1 lncRNA upregulation induces formation of intact paraspeckles. Biochemical and Biophysical Research Communications. 504: 218-224. PMID 30180948 DOI: 10.1016/j.bbrc.2018.08.158 |
0.373 |
|
| 2018 |
Yamazaki T, Souquere S, Chujo T, Kobelke S, Chong YS, Fox AH, Bond CS, Nakagawa S, Pierron G, Hirose T. Functional Domains of NEAT1 Architectural lncRNA Induce Paraspeckle Assembly through Phase Separation. Molecular Cell. 70: 1038-1053.e7. PMID 29932899 DOI: 10.1016/J.Molcel.2018.05.019 |
0.354 |
|
| 2017 |
Mannen T, Hirose T. RNase Sensitivity Screening for Nuclear Bodies with RNA Scaffolds in Mammalian Cells. Bio-Protocol. 7: e2232. PMID 34541231 DOI: 10.21769/BioProtoc.2232 |
0.407 |
|
| 2017 |
Fox AH, Nakagawa S, Hirose T, Bond CS. Paraspeckles: Where Long Noncoding RNA Meets Phase Separation. Trends in Biochemical Sciences. PMID 29289458 DOI: 10.1016/J.Tibs.2017.12.001 |
0.385 |
|
| 2017 |
Chujo T, Hirose T. Nuclear Bodies Built on Architectural Long Noncoding RNAs: Unifying Principles of Their Construction and Function. Molecules and Cells. 40: 889-896. PMID 29276943 DOI: 10.14348/molcells.2017.0263 |
0.362 |
|
| 2017 |
Chujo T, Yamazaki T, Kawaguchi T, Kurosaka S, Takumi T, Nakagawa S, Hirose T. Unusual semi-extractability as a hallmark of nuclear body-associated architectural noncoding RNAs. The Embo Journal. PMID 28404604 DOI: 10.15252/Embj.201695848 |
0.363 |
|
| 2017 |
Mannen T, Hirose T. RNase Sensitivity Screening for Nuclear Bodies with RNA Scaffolds in Mammalian Cells Bio-Protocol. 7. DOI: 10.21769/BIOPROTOC.2232 |
0.309 |
|
| 2016 |
Anantharaman A, Jadaliha M, Tripathi V, Nakagawa S, Hirose T, Jantsch MF, Prasanth SG, Prasanth KV. Paraspeckles modulate the intranuclear distribution of paraspeckle-associated Ctn RNA. Scientific Reports. 6: 34043. PMID 27665741 DOI: 10.1038/Srep34043 |
0.394 |
|
| 2016 |
West JA, Mito M, Kurosaka S, Takumi T, Tanegashima C, Chujo T, Yanaka K, Kingston RE, Hirose T, Bond C, Fox A, Nakagawa S. Structural, super-resolution microscopy analysis of paraspeckle nuclear body organization. The Journal of Cell Biology. PMID 27646274 DOI: 10.1083/Jcb.201601071 |
0.381 |
|
| 2016 |
Mannen T, Yamashita S, Tomita K, Goshima N, Hirose T. The Sam68 nuclear body is composed of two RNase-sensitive substructures joined by the adaptor HNRNPL. The Journal of Cell Biology. 214: 45-59. PMID 27377249 DOI: 10.1083/Jcb.201601024 |
0.395 |
|
| 2016 |
Hirose T, Nakagawa S. Clues to long noncoding RNA taxonomy. Biochimica Et Biophysica Acta. 1859: 1-2. PMID 26642900 DOI: 10.1016/J.Bbagrm.2015.11.011 |
0.322 |
|
| 2016 |
Hirose T, Nakagawa S. Clues to long noncoding RNA taxonomy Biochimica Et Biophysica Acta - Gene Regulatory Mechanisms. 1859: 1-2. DOI: 10.1016/j.bbagrm.2015.11.011 |
0.322 |
|
| 2015 |
Kawaguchi T, Hirose T. Chromatin remodeling complexes in the assembly of long noncoding RNA-dependent nuclear bodies. Nucleus (Austin, Tex.). 6: 462-7. PMID 26709446 DOI: 10.1080/19491034.2015.1119353 |
0.409 |
|
| 2015 |
Hennig S, Kong G, Mannen T, Sadowska A, Kobelke S, Blythe A, Knott GJ, Iyer KS, Ho D, Newcombe EA, Hosoki K, Goshima N, Kawaguchi T, Hatters D, Trinkle-Mulcahy L, ... Hirose T, et al. Prion-like domains in RNA binding proteins are essential for building subnuclear paraspeckles. The Journal of Cell Biology. 210: 529-39. PMID 26283796 DOI: 10.1083/jcb.201504117 |
0.366 |
|
| 2015 |
Chujo T, Yamazaki T, Hirose T. Architectural RNAs (arcRNAs): A class of long noncoding RNAs that function as the scaffold of nuclear bodies. Biochimica Et Biophysica Acta. PMID 26021608 DOI: 10.1016/j.bbagrm.2015.05.007 |
0.412 |
|
| 2015 |
Kawaguchi T, Tanigawa A, Naganuma T, Ohkawa Y, Souquere S, Pierron G, Hirose T. SWI/SNF chromatin-remodeling complexes function in noncoding RNA-dependent assembly of nuclear bodies. Proceedings of the National Academy of Sciences of the United States of America. 112: 4304-9. PMID 25831520 DOI: 10.1073/pnas.1423819112 |
0.388 |
|
| 2015 |
Yamazaki T, Hirose T. The building process of the functional paraspeckle with long non-coding RNAs. Frontiers in Bioscience (Elite Edition). 7: 1-41. PMID 25553361 DOI: 10.2741/E715 |
0.42 |
|
| 2015 |
Hirose T, Mannen T. Rapid and efficient elimination of specific nuclear noncoding RNAs in mammalian cells with antisense oligonucleotides Methods in Molecular Biology. 1206: 149-156. PMID 25240894 DOI: 10.1007/978-1-4939-1369-5_13 |
0.365 |
|
| 2015 |
Kawaguchi T, Tanigawa A, Naganuma T, Ohkawa Y, Souquere S, Pierron G, Hirose T, Steitz JA. SWI/SNF chromatin-remodeling complexes function in noncoding RNA-dependent assembly of nuclear bodies Proceedings of the National Academy of Sciences of the United States of America. 112: 4304-4309. DOI: 10.1073/pnas.1423819112 |
0.492 |
|
| 2014 |
Standaert L, Adriaens C, Radaelli E, Van Keymeulen A, Blanpain C, Hirose T, Nakagawa S, Marine JC. The long noncoding RNA Neat1 is required for mammary gland development and lactation. Rna (New York, N.Y.). 20: 1844-9. PMID 25316907 DOI: 10.1261/Rna.047332.114 |
0.364 |
|
| 2014 |
Hirose T, Mishima Y, Tomari Y. Elements and machinery of non-coding RNAs: toward their taxonomy. Embo Reports. 15: 489-507. PMID 24731943 DOI: 10.1002/Embr.201338390 |
0.372 |
|
| 2014 |
Hirose T, Virnicchi G, Tanigawa A, Naganuma T, Li R, Kimura H, Yokoi T, Nakagawa S, Bénard M, Fox AH, Pierron G. NEAT1 long noncoding RNA regulates transcription via protein sequestration within subnuclear bodies. Molecular Biology of the Cell. 25: 169-83. PMID 24173718 DOI: 10.1091/Mbc.E13-09-0558 |
0.365 |
|
| 2013 |
Naganuma T, Hirose T. Paraspeckle formation during the biogenesis of long non-coding RNAs. Rna Biology. 10: 456-61. PMID 23324609 DOI: 10.4161/rna.23547 |
0.431 |
|
| 2012 |
Hirose T, Nakagawa S. Paraspeckles: possible nuclear hubs by the RNA for the RNA. Biomolecular Concepts. 3: 415-428. PMID 25436547 DOI: 10.1515/Bmc-2012-0017 |
0.394 |
|
| 2012 |
Naganuma T, Nakagawa S, Tanigawa A, Sasaki YF, Goshima N, Hirose T. Alternative 3'-end processing of long noncoding RNA initiates construction of nuclear paraspeckles. The Embo Journal. 31: 4020-4034. PMID 22960638 DOI: 10.1038/Emboj.2012.251 |
0.394 |
|
| 2012 |
Nakagawa S, Ip JY, Shioi G, Tripathi V, Zong X, Hirose T, Prasanth KV. Malat1 is not an essential component of nuclear speckles in mice. Rna (New York, N.Y.). 18: 1487-99. PMID 22718948 DOI: 10.1261/Rna.033217.112 |
0.353 |
|
| 2012 |
Nakagawa S, Hirose T. Paraspeckle nuclear bodies—useful uselessness? Cellular and Molecular Life Sciences. 69: 3027-3036. PMID 22476590 DOI: 10.1007/S00018-012-0973-X |
0.399 |
|
| 2012 |
Ideue T, Adachi S, Naganuma T, Tanigawa A, Natsume T, Hirose T. U7 small nuclear ribonucleoprotein represses histone gene transcription in cell cycle-arrested cells. Proceedings of the National Academy of Sciences of the United States of America. 109: 5693-8. PMID 22451911 DOI: 10.1073/pnas.1200523109 |
0.301 |
|
| 2012 |
Miyagawa R, Tano K, Mizuno R, Nakamura Y, Ijiri K, Rakwal R, Shibato J, Masuo Y, Mayeda A, Hirose T, Akimitsu N. Identification of cis- and trans-acting factors involved in the localization of MALAT-1 noncoding RNA to nuclear speckles. Rna (New York, N.Y.). 18: 738-51. PMID 22355166 DOI: 10.1261/Rna.028639.111 |
0.384 |
|
| 2012 |
Kawaguchi T, Hirose T. Architectural roles of long noncoding RNAs in the intranuclear formation of functional paraspeckles. Frontiers in Bioscience (Landmark Edition). 17: 1729-46. PMID 22201832 DOI: 10.2741/4015 |
0.415 |
|
| 2010 |
Aoki K, Harashima A, Sano M, Yokoi T, Nakamura S, Kibata M, Hirose T. A thymus-specific noncoding RNA, Thy-ncR1, is a cytoplasmic riboregulator of MFAP4 mRNA in immature T-cell lines. Bmc Molecular Biology. 11: 99. PMID 21162727 DOI: 10.1186/1471-2199-11-99 |
0.329 |
|
| 2009 |
Kitao S, Hirose T. [Nuclear bodies and their significance for RNA biogenesis] Tanpakushitsu Kakusan Koso. Protein, Nucleic Acid, Enzyme. 54: 2127-2132. PMID 21089629 |
0.349 |
|
| 2009 |
Sasaki YTF, Hirose T. How to build a paraspeckle Genome Biology. 10: 227. PMID 19664169 |
0.307 |
|
| 2009 |
Ideue T, Hino K, Kitao S, Yokoi T, Hirose T. Efficient oligonucleotide-mediated degradation of nuclear noncoding RNAs in mammalian cultured cells. Rna (New York, N.Y.). 15: 1578-87. PMID 19535462 DOI: 10.1261/rna.1657609 |
0.431 |
|
| 2009 |
Kikuchi K, Fukuda M, Ito T, Inoue M, Yokoi T, Chiku S, Mitsuyama T, Asai K, Hirose T, Aizawa Y. Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation. Nucleic Acids Research. 37: 4987-5000. PMID 19531736 DOI: 10.1093/nar/gkp426 |
0.322 |
|
| 2009 |
Sasaki YT, Ideue T, Sano M, Mituyama T, Hirose T. MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles. Proceedings of the National Academy of Sciences of the United States of America. 106: 2525-30. PMID 19188602 DOI: 10.1073/pnas.0807899106 |
0.327 |
|
| 2007 |
Fukumura K, Kato A, Jin Y, Ideue T, Hirose T, Kataoka N, Fujiwara T, Sakamoto H, Inoue K. Tissue-specific splicing regulator Fox-1 induces exon skipping by interfering E complex formation on the downstream intron of human F1gamma gene. Nucleic Acids Research. 35: 5303-11. PMID 17686786 DOI: 10.1093/Nar/Gkm569 |
0.406 |
|
| 2007 |
Ideue T, Sasaki YT, Hagiwara M, Hirose T. Introns play an essential role in splicing-dependent formation of the exon junction complex. Genes & Development. 21: 1993-8. PMID 17675447 DOI: 10.1101/gad.1557907 |
0.468 |
|
| 2007 |
Kuroda H, Suzuki H, Kusumegi T, Hirose T, Yukawa Y, Sugiura M. Translation of psbC mRNAs starts from the downstream GUG, not the upstream AUG, and requires the extended Shine-Dalgarno sequence in tobacco chloroplasts. Plant & Cell Physiology. 48: 1374-8. PMID 17664183 DOI: 10.1093/pcp/pcm097 |
0.329 |
|
| 2007 |
Nojima T, Hirose T, Kimura H, Hagiwara M. The interaction between cap-binding complex and RNA export factor is required for intronless mRNA export. The Journal of Biological Chemistry. 282: 15645-51. PMID 17363367 DOI: 10.1074/jbc.M700629200 |
0.432 |
|
| 2006 |
Ideue T, Hirose T. Nuclear surveillance for RNA processing Tanpakushitsu Kakusan Koso. Protein, Nucleic Acid, Enzyme. 51: 2205-2209. PMID 17471939 |
0.348 |
|
| 2006 |
Hirose T, Ideue T, Nagai M, Hagiwara M, Shu MD, Steitz JA. A spliceosomal intron binding protein, IBP160, links position-dependent assembly of intron-encoded box C/D snoRNP to pre-mRNA splicing. Molecular Cell. 23: 673-84. PMID 16949364 DOI: 10.1016/J.Molcel.2006.07.011 |
0.54 |
|
| 2004 |
Hirose T, Shu MD, Steitz JA. Splicing of U12-type introns deposits an exon junction complex competent to induce nonsense-mediated mRNA decay. Proceedings of the National Academy of Sciences of the United States of America. 101: 17976-81. PMID 15608055 DOI: 10.1073/Pnas.0408435102 |
0.497 |
|
| 2004 |
Hirose T, Sugiura M. Multiple elements required for translation of plastid atpB mRNA lacking the Shine-Dalgarno sequence. Nucleic Acids Research. 32: 3503-10. PMID 15229294 DOI: 10.1093/nar/gkh682 |
0.36 |
|
| 2004 |
Hirose T, Miyamoto T, Obokata J, Sugiura M. In vitro RNA editing systems from higher plant chloroplasts. Methods in Molecular Biology (Clifton, N.J.). 265: 333-44. PMID 15103082 DOI: 10.1385/1-59259-775-0:333 |
0.352 |
|
| 2003 |
Hirose T, Shu MD, Steitz JA. Splicing-dependent and -independent modes of assembly for intron-encoded box C/D snoRNPs in mammalian cells. Molecular Cell. 12: 113-23. PMID 12887897 DOI: 10.1016/S1097-2765(03)00267-3 |
0.553 |
|
| 2001 |
Hirose T, Steitz JA. Position within the host intron is critical for efficient processing of box C/D snoRNAs in mammalian cells. Proceedings of the National Academy of Sciences of the United States of America. 98: 12914-9. PMID 11606788 DOI: 10.1073/Pnas.231490998 |
0.544 |
|
| 2001 |
Hirose T, Sugiura M. Involvement of a site-specific trans-acting factor and a common RNA-binding protein in the editing of chloroplast mRNAs: Development of a chloroplast in vitro RNA editing system Embo Journal. 20: 1144-1152. PMID 11230137 DOI: 10.1093/emboj/20.5.1144 |
0.412 |
|
| 1999 |
Hirose T, Kusumegi T, Tsudzuki T, Sugiura M. RNA editing sites in tobacco chloroplast transcripts: editing as a possible regulator of chloroplast RNA polymerase activity. Molecular & General Genetics : Mgg. 262: 462-7. PMID 10589833 DOI: 10.1007/s004380051106 |
0.446 |
|
| 1999 |
Hirose T, Ideue T, Wakasugi T, Sugiura M. The chloroplast infA gene with a functional UUG initiation codon. Febs Letters. 445: 169-72. PMID 10069394 DOI: 10.1016/S0014-5793(99)00123-4 |
0.313 |
|
| 1999 |
Sugiura M, Hirose T, Sugita M. Evolution and mechanism of translation in chloroplasts. Annual Review of Genetics. 32: 437-59. PMID 9928487 DOI: 10.1146/ANNUREV.GENET.32.1.437 |
0.379 |
|
| 1998 |
Hirose T, Kusumegi T, Sugiura M. Translation of tobacco chloroplast rps14 mRNA depends on a Shine-Dalgarno-like sequence in the 5'-untranslated region but not on internal RNA editing in the coding region. Febs Letters. 430: 257-60. PMID 9688550 DOI: 10.1016/S0014-5793(98)00673-5 |
0.402 |
|
| 1998 |
Hirose T, Sugiura M. Both RNA editing and RNA cleavage are required for translation of tobacco chloroplast ndhD mRNA: a possible regulatory mechanism for the expression of a chloroplast operon consisting of functionally unrelated genes. The Embo Journal. 16: 6804-11. PMID 9362494 DOI: 10.1093/emboj/16.22.6804 |
0.452 |
|
| 1996 |
Wakasugi T, Hirose T, Horihata M, Tsudzuki T, Kössel H, Sugiura M. Creation of a novel protein-coding region at the RNA level in black pine chloroplasts: the pattern of RNA editing in the gymnosperm chloroplast is different from that in angiosperms. Proceedings of the National Academy of Sciences of the United States of America. 93: 8766-70. PMID 8710946 DOI: 10.1073/Pnas.93.16.8766 |
0.43 |
|
| 1996 |
Vera A, Hirose T, Sugiura M. A ribosomal protein gene (rpl32) from tobacco chloroplast DNA is transcribed from alternative promoters: similarities in promoter region organization in plastid housekeeping genes. Molecular & General Genetics : Mgg. 251: 518-25. PMID 8709957 DOI: 10.1007/BF02173640 |
0.327 |
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| 1996 |
Hirose T, Fan H, Suzuki JY, Wakasugi T, Tsudzuki T, Kössel H, Sugiura M. Occurrence of silent RNA editing in chloroplasts: its species specificity and the influence of environmental and developmental conditions. Plant Molecular Biology. 30: 667-72. PMID 8605316 DOI: 10.1007/Bf00049342 |
0.318 |
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| 1994 |
Hirose T, Sugita M, Sugiura M. Characterization of a cDNA encoding a novel type of RNA-binding protein in tobacco: its expression and nucleic acid-binding properties. Molecular & General Genetics : Mgg. 244: 360-6. PMID 8078461 DOI: 10.1007/BF00286687 |
0.335 |
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| 1994 |
Hirose T, Wakasugi T, Sugiura M, Kössel H. RNA editing of tobacco petB mRNAs occurs both in chloroplasts and non-photosynthetic proplastids. Plant Molecular Biology. 26: 509-13. PMID 7948899 DOI: 10.1007/Bf00039562 |
0.415 |
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| 1993 |
Hirose T, Sugita M, Sugiura M. cDNA structure, expression and nucleic acid-binding properties of three RNA-binding proteins in tobacco: occurrence of tissue-specific alternative splicing. Nucleic Acids Research. 21: 3981-7. PMID 8371974 DOI: 10.1093/NAR/21.17.3981 |
0.4 |
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