| Year |
Citation |
Score |
| 2023 |
Zhang M, Xiao Y, Jiang Z, Yi C. Quantifying mA and Ψ Modifications in the Transcriptome via Chemical-Assisted Approaches. Accounts of Chemical Research. 56: 2980-2991. PMID 37851547 DOI: 10.1021/acs.accounts.3c00436 |
0.311 |
|
| 2023 |
Lu B, Yi C. TRACE-seq: Rapid, Low-Input, One-Tube RNA-seq Library Construction Based on Tagmentation of RNA/DNA Hybrids. Current Protocols. 3: e735. PMID 37014790 DOI: 10.1002/cpz1.735 |
0.324 |
|
| 2022 |
Liu C, Sun H, Yi Y, Shen W, Li K, Xiao Y, Li F, Li Y, Hou Y, Lu B, Liu W, Meng H, Peng J, Yi C, Wang J. Absolute quantification of single-base mA methylation in the mammalian transcriptome using GLORI. Nature Biotechnology. PMID 36302990 DOI: 10.1038/s41587-022-01487-9 |
0.302 |
|
| 2022 |
Cerneckis J, Cui Q, He C, Yi C, Shi Y. Decoding pseudouridine: an emerging target for therapeutic development. Trends in Pharmacological Sciences. PMID 35461717 DOI: 10.1016/j.tips.2022.03.008 |
0.406 |
|
| 2021 |
Cui Q, Yin K, Zhang X, Ye P, Chen X, Chao J, Meng H, Wei J, Roeth D, Li L, Qin Y, Sun G, Zhang M, Klein J, Huynhle M, ... ... Yi C, et al. Targeting PUS7 suppresses tRNA pseudouridylation and glioblastoma tumorigenesis. Nature Cancer. 2: 932-949. PMID 35121864 DOI: 10.1038/s43018-021-00238-0 |
0.662 |
|
| 2021 |
Zhuang Y, Liu J, Wu H, Zhu Q, Yan Y, Meng H, Chen PR, Yi C. Increasing the efficiency and precision of prime editing with guide RNA pairs. Nature Chemical Biology. PMID 34711981 DOI: 10.1038/s41589-021-00889-1 |
0.394 |
|
| 2021 |
Feng Y, Chen JJ, Xie NB, Ding JH, You XJ, Tao WB, Zhang X, Yi C, Zhou X, Yuan BF, Feng YQ. Direct decarboxylation of ten-eleven translocation-produced 5-carboxylcytosine in mammalian genomes forms a new mechanism for active DNA demethylation. Chemical Science. 12: 11322-11329. PMID 34567494 DOI: 10.1039/d1sc02161c |
0.308 |
|
| 2021 |
Liu M, Zhang J, Zhu C, Zhang X, Xiao W, Yan Y, Liu L, Zeng H, Gao YQ, Yi C. DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes. Nature Communications. 12: 4108. PMID 34226550 DOI: 10.1038/s41467-021-24431-y |
0.308 |
|
| 2020 |
Lu B, Dong L, Yi D, Zhang M, Zhu C, Li X, Yi C. Transposase assisted tagmentation of RNA/DNA hybrid duplexes. Elife. 9. PMID 32701057 DOI: 10.7554/Elife.54919 |
0.446 |
|
| 2020 |
Zhao LY, Song J, Liu Y, Song CX, Yi C. Mapping the epigenetic modifications of DNA and RNA. Protein & Cell. PMID 32440736 DOI: 10.1007/S13238-020-00733-7 |
0.623 |
|
| 2020 |
Li X, Liang QX, Lin JR, Peng J, Yang JH, Yi C, Yu Y, Zhang QC, Zhou KR. Epitranscriptomic technologies and analyses. Science China. Life Sciences. PMID 32170629 DOI: 10.1007/S11427-019-1658-X |
0.393 |
|
| 2020 |
Lu B, Dong L, Yi D, Zhang M, Zhu C, Li X, Yi C. Author response: Transposase-assisted tagmentation of RNA/DNA hybrid duplexes Elife. DOI: 10.7554/Elife.54919.Sa2 |
0.414 |
|
| 2019 |
Liu L, Zhang Y, Liu M, Wei W, Peng J, Yi C. Structural insights into the specific recognition of 5-methylcytosine and 5-hydroxymethylcytosine by TAL effectors. Journal of Molecular Biology. PMID 31863750 DOI: 10.1016/J.Jmb.2019.11.023 |
0.372 |
|
| 2019 |
Song J, Yi C. Reading Chemical Modifications in the Transcriptome. Journal of Molecular Biology. PMID 31628951 DOI: 10.1016/J.Jmb.2019.10.006 |
0.391 |
|
| 2019 |
Zhu C, Gao Y, Peng J, Tang F, Yi C. Single-Cell 5fC Sequencing. Methods in Molecular Biology (Clifton, N.J.). 1979: 251-267. PMID 31028643 DOI: 10.1007/978-1-4939-9240-9_16 |
0.359 |
|
| 2019 |
Yi C, Zeng H, He B. Compilation of modern technologies to map genome-wide cytosine modifications in DNA. Chembiochem : a European Journal of Chemical Biology. PMID 30809902 DOI: 10.1002/Cbic.201900035 |
0.432 |
|
| 2018 |
Yi C, Zeng H, Mondal M, Song R, Zhang J, Xia B, Liu M, Zhu C, He B, Gao YQ. Unnatural cytosine bases recognized as thymines by DNA polymerases via the formation of the Watson-Crick geometry. Angewandte Chemie (International Ed. in English). PMID 30407705 DOI: 10.1002/anie.201807845 |
0.435 |
|
| 2018 |
Zeng H, He B, Xia B, Dongsheng B, Lu X, Cai J, Chen L, Zhou A, Zhu C, Meng H, Gao Y, Guo H, He C, Dai Q, Yi C. Bisulfite-free, nano-scale analysis of 5-hydroxymethylcytosine at single base resolution. Journal of the American Chemical Society. PMID 30278133 DOI: 10.1021/Jacs.8B08297 |
0.484 |
|
| 2018 |
Xiong X, Li X, Yi C. N-methyladenosine methylome in messenger RNA and non-coding RNA. Current Opinion in Chemical Biology. 45: 179-186. PMID 30007213 DOI: 10.1016/J.Cbpa.2018.06.017 |
0.376 |
|
| 2018 |
Shu X, Liu M, Lu Z, Zhu C, Meng H, Huang S, Zhang X, Yi C. Genome-wide mapping reveals that deoxyuridine is enriched in the human centromeric DNA. Nature Chemical Biology. PMID 29785056 DOI: 10.1038/S41589-018-0065-9 |
0.399 |
|
| 2018 |
Zeng H, He B, Yi C, Peng J. Liquid biopsies: DNA methylation analyses in circulating cell-free DNA. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 29706556 DOI: 10.1016/J.Jgg.2018.02.007 |
0.385 |
|
| 2017 |
Zhu R, Song Y, Liu H, Yang Y, Wang S, Yi C, Chen PR. Allosteric histidine switch for regulation of intracellular zinc(II) fluctuation. Proceedings of the National Academy of Sciences of the United States of America. PMID 29229866 DOI: 10.1073/Pnas.1708563115 |
0.382 |
|
| 2017 |
Zhang Y, Liu L, Guo S, Song J, Zhu C, Yue Z, Wei W, Yi C. Deciphering TAL effectors for 5-methylcytosine and 5-hydroxymethylcytosine recognition. Nature Communications. 8: 901. PMID 29026078 DOI: 10.1038/S41467-017-00860-6 |
0.431 |
|
| 2017 |
Lei Z, Yi C. A radiolabeling-free, qPCR-based method for locus-specific pseudouridine detection. Angewandte Chemie (International Ed. in English). PMID 28960747 DOI: 10.1002/Anie.201708276 |
0.331 |
|
| 2017 |
Xiong X, Yi C, Peng J. Epitranscriptomics: Toward A Better Understanding of RNA Modifications. Genomics, Proteomics & Bioinformatics. PMID 28533024 DOI: 10.1016/J.Gpb.2017.03.003 |
0.359 |
|
| 2017 |
Li X, Peng J, Yi C. Transcriptome-Wide Mapping of N (1)-Methyladenosine Methylome. Methods in Molecular Biology (Clifton, N.J.). 1562: 245-255. PMID 28349465 DOI: 10.1007/978-1-4939-6807-7_16 |
0.328 |
|
| 2017 |
Zhu C, Gao Y, Guo H, Xia B, Song J, Wu X, Zeng H, Kee K, Tang F, Yi C. Single-Cell 5-Formylcytosine Landscapes of Mammalian Early Embryos and ESCs at Single-Base Resolution. Cell Stem Cell. PMID 28343982 DOI: 10.1016/J.Stem.2017.02.013 |
0.373 |
|
| 2017 |
Song J, Yi C. Chemical Modifications to RNA: a New Layer of Gene Expression Regulation. Acs Chemical Biology. PMID 28051309 DOI: 10.1021/Acschembio.6B00960 |
0.393 |
|
| 2016 |
Li X, Xiong X, Yi C. Epitranscriptome sequencing technologies: decoding RNA modifications. Nature Methods. 14: 23-31. PMID 28032622 DOI: 10.1038/Nmeth.4110 |
0.398 |
|
| 2016 |
Shu X, Xiong X, Song J, He C, Yi C. Base-Resolution Analysis of Cisplatin-DNA Adducts at the Genome Scale. Angewandte Chemie (International Ed. in English). PMID 27736024 DOI: 10.1002/Anie.201607380 |
0.527 |
|
| 2016 |
Zhu C, Lu L, Zhang J, Yue Z, Song J, Zong S, Liu M, Stovicek O, Gao YQ, Yi C. Tautomerization-dependent recognition and excision of oxidation damage in base-excision DNA repair. Proceedings of the National Academy of Sciences of the United States of America. PMID 27354518 DOI: 10.1073/Pnas.1604591113 |
0.416 |
|
| 2016 |
Li X, Ma S, Yi C. Pseudouridine: the fifth RNA nucleotide with renewed interests. Current Opinion in Chemical Biology. 33: 108-116. PMID 27348156 DOI: 10.1016/J.Cbpa.2016.06.014 |
0.394 |
|
| 2016 |
Li X, Xiong X, Wang K, Wang L, Shu X, Ma S, Yi C. Transcriptome-wide mapping reveals reversible and dynamic N(1)-methyladenosine methylome. Nature Chemical Biology. PMID 26863410 DOI: 10.1038/Nchembio.2040 |
0.322 |
|
| 2016 |
Peng J, Xia B, Yi C. Single-base resolution analysis of DNA epigenome via high-throughput sequencing. Science China. Life Sciences. PMID 26825949 DOI: 10.1007/S11427-016-5013-X |
0.443 |
|
| 2015 |
Song J, Zhu C, Zhang X, Wen X, Liu L, Peng J, Guo H, Yi C. Biochemical and Structural Insights into the Mechanism of DNA Recognition by Arabidopsis ETHYLENE INSENSITIVE3. Plos One. 10: e0137439. PMID 26352699 DOI: 10.1371/Journal.Pone.0137439 |
0.402 |
|
| 2015 |
Xia B, Han D, Lu X, Sun Z, Zhou A, Yin Q, Zeng H, Liu M, Jiang X, Xie W, He C, Yi C. Bisulfite-free, base-resolution analysis of 5-formylcytosine at the genome scale. Nature Methods. PMID 26344045 DOI: 10.1038/Nmeth.3569 |
0.481 |
|
| 2015 |
Karijolich J, Yi C, Yu YT. Transcriptome-wide dynamics of RNA pseudouridylation. Nature Reviews. Molecular Cell Biology. PMID 26285676 DOI: 10.1038/Nrm4040 |
0.372 |
|
| 2015 |
Li X, Ma S, Yi C. Pseudouridine Chemical Labeling and Profiling. Methods in Enzymology. 560: 247-72. PMID 26253974 DOI: 10.1016/Bs.Mie.2015.03.010 |
0.384 |
|
| 2015 |
Zheng G, Qin Y, Clark WC, Dai Q, Yi C, He C, Lambowitz AM, Pan T. Efficient and quantitative high-throughput tRNA sequencing. Nature Methods. PMID 26214130 DOI: 10.1038/Nmeth.3478 |
0.574 |
|
| 2015 |
Li X, Zhu P, Ma S, Song J, Bai J, Sun F, Yi C. Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome. Nature Chemical Biology. PMID 26075521 DOI: 10.1038/Nchembio.1836 |
0.372 |
|
| 2015 |
Xia B, Han D, Lu X, Sun Z, Zhou A, Yin Q, Zeng H, Liu M, Jiang X, Xie W, He C, Yi C. Bisulfite-free, base-resolution analysis of 5-formylcytosine at the genome scale Nature Methods. DOI: 10.1038/nmeth.3569 |
0.316 |
|
| 2014 |
Lu L, Zhu C, Xia B, Yi C. Oxidative demethylation of DNA and RNA mediated by non-heme iron-dependent dioxygenases. Chemistry, An Asian Journal. 9: 2018-29. PMID 24909658 DOI: 10.1002/Asia.201402148 |
0.421 |
|
| 2014 |
Yin Y, Yang L, Zheng G, Gu C, Yi C, He C, Gao YQ, Zhao XS. Dynamics of spontaneous flipping of a mismatched base in DNA duplex. Proceedings of the National Academy of Sciences of the United States of America. 111: 8043-8. PMID 24843124 DOI: 10.1073/Pnas.1400667111 |
0.611 |
|
| 2014 |
Li X, Song J, Yi C. Genome-wide mapping of cellular protein-RNA interactions enabled by chemical crosslinking. Genomics, Proteomics & Bioinformatics. 12: 72-8. PMID 24747191 DOI: 10.1016/J.Gpb.2014.03.001 |
0.381 |
|
| 2014 |
Zhang X, Zhu Z, An F, Hao D, Li P, Song J, Yi C, Guo H. Jasmonate-activated MYC2 represses ETHYLENE INSENSITIVE3 activity to antagonize ethylene-promoted apical hook formation in Arabidopsis. The Plant Cell. 26: 1105-17. PMID 24668749 DOI: 10.1105/Tpc.113.122002 |
0.313 |
|
| 2014 |
Zhu C, Yi C. Switching demethylation activities between AlkB family RNA/DNA demethylases through exchange of active-site residues. Angewandte Chemie (International Ed. in English). 53: 3659-62. PMID 24596302 DOI: 10.1002/Anie.201310050 |
0.406 |
|
| 2013 |
Vilfan ID, Tsai YC, Clark TA, Wegener J, Dai Q, Yi C, Pan T, Turner SW, Korlach J. Analysis of RNA base modification and structural rearrangement by single-molecule real-time detection of reverse transcription. Journal of Nanobiotechnology. 11: 8. PMID 23552456 DOI: 10.1186/1477-3155-11-8 |
0.431 |
|
| 2013 |
Yi C, He C. DNA repair by reversal of DNA damage. Cold Spring Harbor Perspectives in Biology. 5: a012575. PMID 23284047 DOI: 10.1101/Cshperspect.A012575 |
0.514 |
|
| 2012 |
Song CX, Yi C, He C. Mapping recently identified nucleotide variants in the genome and transcriptome. Nature Biotechnology. 30: 1107-16. PMID 23138310 DOI: 10.1038/Nbt.2398 |
0.628 |
|
| 2012 |
Sun F, Ding Y, Ji Q, Liang Z, Deng X, Wong CC, Yi C, Zhang L, Xie S, Alvarez S, Hicks LM, Luo C, Jiang H, Lan L, He C. Protein cysteine phosphorylation of SarA/MgrA family transcriptional regulators mediates bacterial virulence and antibiotic resistance. Proceedings of the National Academy of Sciences of the United States of America. 109: 15461-6. PMID 22927394 DOI: 10.1073/Pnas.1205952109 |
0.618 |
|
| 2012 |
Yi C, Chen B, Qi B, Zhang W, Jia G, Zhang L, Li CJ, Dinner AR, Yang CG, He C. Duplex interrogation by a direct DNA repair protein in search of base damage. Nature Structural & Molecular Biology. 19: 671-6. PMID 22659876 DOI: 10.1038/Nsmb.2320 |
0.552 |
|
| 2012 |
Parisien M, Yi C, Pan T. Rationalization and prediction of selective decoding of pseudouridine-modified nonsense and sense codons. Rna (New York, N.Y.). 18: 355-67. PMID 22282339 DOI: 10.1261/Rna.031351.111 |
0.313 |
|
| 2012 |
Jia G, Fu Y, Zhao X, Dai Q, Zheng G, Yang Y, Yi C, Lindahl T, Pan T, Yang Y, He C. Erratum: Corrigendum: N6-Methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO Nature Chemical Biology. 8: 1008-1008. DOI: 10.1038/Nchembio1212-1008A |
0.631 |
|
| 2011 |
Jia G, Fu Y, Zhao X, Dai Q, Zheng G, Yang Y, Yi C, Lindahl T, Pan T, Yang YG, He C. N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO. Nature Chemical Biology. 7: 885-7. PMID 22002720 DOI: 10.1038/Nchembio.687 |
0.645 |
|
| 2011 |
Sun F, Zhou L, Zhao BC, Deng X, Cho H, Yi C, Jian X, Song CX, Luan CH, Bae T, Li Z, He C. Targeting MgrA-mediated virulence regulation in Staphylococcus aureus. Chemistry & Biology. 18: 1032-41. PMID 21867918 DOI: 10.1016/J.Chembiol.2011.05.014 |
0.735 |
|
| 2011 |
Yi C, Pan T. Cellular dynamics of RNA modification. Accounts of Chemical Research. 44: 1380-8. PMID 21615108 DOI: 10.1021/Ar200057M |
0.42 |
|
| 2011 |
Song CX, Szulwach KE, Fu Y, Dai Q, Yi C, Li X, Li Y, Chen CH, Zhang W, Jian X, Wang J, Zhang L, Looney TJ, Zhang B, Godley LA, et al. Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine. Nature Biotechnology. 29: 68-72. PMID 21151123 DOI: 10.1038/Nbt.1732 |
0.717 |
|
| 2010 |
Yi C, Jia G, Hou G, Dai Q, Zhang W, Zheng G, Jian X, Yang CG, Cui Q, He C. Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase. Nature. 468: 330-3. PMID 21068844 DOI: 10.1038/Nature09497 |
0.684 |
|
| 2010 |
Chen H, Yi C, Zhang J, Zhang W, Ge Z, Yang CG, He C. Structural insight into the oxidation-sensing mechanism of the antibiotic resistance of regulator MexR. Embo Reports. 11: 685-90. PMID 20616806 DOI: 10.1038/Embor.2010.96 |
0.455 |
|
| 2010 |
Lu L, Yi C, Jian X, Zheng G, He C. Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked protein-DNA system. Nucleic Acids Research. 38: 4415-25. PMID 20223766 DOI: 10.1093/Nar/Gkq129 |
0.703 |
|
| 2010 |
Yi C, He C. AlkB recognition of a bulky DNA base adduct stabilized by chemical cross-linking Science China Chemistry. 53: 86-90. DOI: 10.1007/S11426-010-0008-0 |
0.564 |
|
| 2009 |
Yi C, Yang CG, He C. A non-heme iron-mediated chemical demethylation in DNA and RNA. Accounts of Chemical Research. 42: 519-29. PMID 19852088 DOI: 10.1021/Ar800178J |
0.574 |
|
| 2008 |
Jia G, Yang CG, Yang S, Jian X, Yi C, Zhou Z, He C. Oxidative demethylation of 3-methylthymine and 3-methyluracil in single-stranded DNA and RNA by mouse and human FTO. Febs Letters. 582: 3313-9. PMID 18775698 DOI: 10.1016/J.Febslet.2008.08.019 |
0.687 |
|
| 2008 |
Yang CG, Yi C, Duguid EM, Sullivan CT, Jian X, Rice PA, He C. Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA. Nature. 452: 961-5. PMID 18432238 DOI: 10.1038/Nature06889 |
0.744 |
|
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