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Harold Ray Garner - Publications

Affiliations: 
1994-2009 University of Texas Southwestern Medical Center, Dallas, TX, United States 
 2009- Biochemistry and Internal Medicine Virginia Polytechnic Institute and State University, Blacksburg, VA, United States 
Website:
https://www.vcom.edu/staff/harold-skip-garner
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56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Fonville NC, Velmurugan KR, Tae H, Vaksman Z, McIver LJ, Garner HR. Genomic leftovers: identifying novel microsatellites, over-represented motifs and functional elements in the human genome. Scientific Reports. 6: 27722. PMID 27278669 DOI: 10.1038/srep27722  0.655
2015 Karunasena E, Mciver LJ, Bavarva JH, Wu X, Zhu H, Garner HR. 'Cut from the same cloth': Shared microsatellite variants among cancers link to ectodermal tissues-neural tube and crest cells. Oncotarget. 6: 22038-47. PMID 26246470 DOI: 10.18632/Oncotarget.4194  0.33
2015 Fonville NC, Vaksman Z, McIver LJ, Garner HR. Population analysis of microsatellite genotypes reveals a signature associated with ovarian cancer. Oncotarget. 6: 11407-20. PMID 25779658 DOI: 10.18632/Oncotarget.2933  0.681
2015 Vaksman Z, Garner HR. Somatic microsatellite variability as a predictive marker for colorectal cancer and liver cancer progression. Oncotarget. 6: 5760-71. PMID 25691061 DOI: 10.18632/Oncotarget.3306  0.653
2014 Garner HR, Waitzkin MB, Bavarva JH. What do the changes in the aging genome mean for pharmacogenomics? Pharmacogenomics. 15: 1725-1728. PMID 25493565 DOI: 10.2217/Pgs.14.131  0.31
2014 Vaksman Z, Fonville NC, Tae H, Garner HR. Exome-wide somatic microsatellite variation is altered in cells with DNA repair deficiencies. Plos One. 9: e110263. PMID 25402475 DOI: 10.1371/Journal.Pone.0110263  0.665
2014 Tae H, Karunasena E, Bavarva JH, McIver LJ, Garner HR. Large scale comparison of non-human sequences in human sequencing data. Genomics. 104: 453-8. PMID 25173571 DOI: 10.1016/J.Ygeno.2014.08.009  0.367
2014 Karunasena E, McIver LJ, Rood BR, Wu X, Zhu H, Bavarva JH, Garner HR. Somatic intronic microsatellite loci differentiate glioblastoma from lower-grade gliomas. Oncotarget. 5: 6003-14. PMID 25153720 DOI: 10.18632/Oncotarget.2076  0.374
2014 Kim YB, Oh JH, McIver LJ, Rashkovetsky E, Michalak K, Garner HR, Kang L, Nevo E, Korol AB, Michalak P. Divergence of Drosophila melanogaster repeatomes in response to a sharp microclimate contrast in Evolution Canyon, Israel. Proceedings of the National Academy of Sciences of the United States of America. 111: 10630-5. PMID 25006263 DOI: 10.1073/Pnas.1410372111  0.325
2014 Dittmar WJ, McIver L, Michalak P, Garner HR, Valdez G. EvoCor: a platform for predicting functionally related genes using phylogenetic and expression profiles. Nucleic Acids Research. 42: W72-5. PMID 24848012 DOI: 10.1093/Nar/Gku442  0.333
2014 Tae H, Karunasena E, Bavarva JH, Garner HR. Updating microbial genomic sequences: improving accuracy & innovation Biodata Mining. 7. DOI: 10.1186/1756-0381-7-25  0.364
2013 Bavarva JH, Tae H, Michalak P, Garner HR. Life cycle of an n-globin pseudogene microsatellite locus. Frontiers in Genetics. 4: 267. PMID 24363661 DOI: 10.3389/Fgene.2013.00267  0.321
2013 Tae H, McMahon KW, Settlage RE, Bavarva JH, Garner HR. ReviSTER: an automated pipeline to revise misaligned reads to simple tandem repeats. Bioinformatics (Oxford, England). 29: 1734-41. PMID 23677944 DOI: 10.1093/Bioinformatics/Btt277  0.361
2013 McIver LJ, McCormick JF, Martin A, Fondon JW, Garner HR. Population-scale analysis of human microsatellites reveals novel sources of exonic variation Gene. 516: 328-334. PMID 23274653 DOI: 10.1016/J.Gene.2012.12.068  0.371
2012 Tae H, Settlage RE, Shallom S, Bavarva JH, Preston D, Hawkins GN, Adams LG, Garner HR. Improved variation calling via an iterative backbone remapping and local assembly method for bacterial genomes. Genomics. 100: 271-6. PMID 22967795 DOI: 10.1016/J.Ygeno.2012.07.015  0.353
2012 Shallom SJ, Tae H, Sarmento L, Preston D, McIver L, Franck C, Dickerman A, Adams LG, Garner HR. Comparison of genome diversity of Brucella spp. field isolates using Universal Bio-signature Detection Array and whole genome sequencing reveals limitations of current diagnostic methods. Gene. 509: 142-8. PMID 22967710 DOI: 10.1016/J.Gene.2012.07.073  0.36
2012 Tae H, Shallom S, Settlage R, Hawkins GN, Adams LG, Garner HR. Complete genome sequence of Brucella suis VBI22, isolated from bovine milk. Journal of Bacteriology. 194: 910. PMID 22275106 DOI: 10.1128/Jb.06556-11  0.316
2011 Tae H, Shallom S, Settlage R, Preston D, Adams LG, Garner HR. Revised genome sequence of Brucella suis 1330. Journal of Bacteriology. 193: 6410. PMID 22038969 DOI: 10.1128/Jb.06181-11  0.34
2011 Shallom SJ, Weeks JN, Galindo CL, McIver L, Sun Z, McCormick J, Adams LG, Garner HR. A species independent universal bio-detection microarray for pathogen forensics and phylogenetic classification of unknown microorganisms. Bmc Microbiology. 11: 132. PMID 21672191 DOI: 10.1186/1471-2180-11-132  0.317
2011 Galindo CL, McIver LJ, Tae H, McCormick JF, Skinner MA, Hoeschele I, Lewis CM, Minna JD, Boothman DA, Garner HR. Sporadic breast cancer patients' germline DNA exhibit an AT-rich microsatellite signature. Genes, Chromosomes & Cancer. 50: 275-83. PMID 21319262 DOI: 10.1002/Gcc.20853  0.304
2009 Galindo CL, McIver LJ, McCormick JF, Skinner MA, Xie Y, Gelhausen RA, Ng K, Kumar NM, Garner HR. Global microsatellite content distinguishes humans, primates, animals, and plants. Molecular Biology and Evolution. 26: 2809-19. PMID 19717526 DOI: 10.1093/Molbev/Msp192  0.383
2009 Rossetti CA, Galindo CL, Lawhon SD, Garner HR, Adams LG. Brucella melitensis global gene expression study provides novel information on growth phase-specific gene regulation with potential insights for understanding Brucella:host initial interactions. Bmc Microbiology. 9: 81. PMID 19419566 DOI: 10.1186/1471-2180-9-81  0.308
2008 Bosnakovski D, Xu Z, Gang EJ, Galindo CL, Liu M, Simsek T, Garner HR, Agha-Mohammadi S, Tassin A, Coppée F, Belayew A, Perlingeiro RR, Kyba M. An isogenetic myoblast expression screen identifies DUX4-mediated FSHD-associated molecular pathologies. The Embo Journal. 27: 2766-79. PMID 18833193 DOI: 10.1038/Emboj.2008.201  0.311
2008 Kulkarni V, Errami M, Barber R, Garner HR. Exhaustive prediction of disease susceptibility to coding base changes in the human genome. Bmc Bioinformatics. 9: S3. PMID 18793467 DOI: 10.1186/1471-2105-9-S9-S3  0.316
2007 Shah JK, Garner HR, White MA, Shames DS, Minna JD. sIR: siRNA Information Resource, a web-based tool for siRNA sequence design and analysis and an open access siRNA database. Bmc Bioinformatics. 8: 178. PMID 17540034 DOI: 10.1186/1471-2105-8-178  0.348
2007 Laidlaw J, Gelfand Y, Ng KW, Garner HR, Ranganathan R, Benson G, Fondon JW. Elevated basal slippage mutation rates among the Canidae. The Journal of Heredity. 98: 452-60. PMID 17437958 DOI: 10.1093/Jhered/Esm017  0.376
2007 Fondon JW, Garner HR. Detection of length-dependent effects of tandem repeat alleles by 3-D geometric decomposition of craniofacial variation. Development Genes and Evolution. 217: 79-85. PMID 17066275 DOI: 10.1007/S00427-006-0113-4  0.306
2005 Ferguson DA, Muenster MR, Zang Q, Spencer JA, Schageman JJ, Lian Y, Garner HR, Gaynor RB, Huff JW, Pertsemlidis A, Ashfaq R, Schorge J, Becerra C, Williams NS, Graff JM. Selective identification of secreted and transmembrane breast cancer markers using Escherichia coli ampicillin secretion trap. Cancer Research. 65: 8209-17. PMID 16166296 DOI: 10.1158/0008-5472.Can-04-3726  0.326
2005 Lian Y, Garner HR. Evidence for the regulation of alternative splicing via complementary DNA sequence repeats Bioinformatics. 21: 1358-1364. PMID 15673565 DOI: 10.1093/Bioinformatics/Bti180  0.343
2004 Fondon JW, Garner HR. Molecular origins of rapid and continuous morphological evolution. Proceedings of the National Academy of Sciences of the United States of America. 101: 18058-63. PMID 15596718 DOI: 10.1073/Pnas.0408118101  0.345
2004 Belosludtsev YY, Bowerman D, Weil R, Marthandan N, Balog R, Luebke K, Lawson J, Johnston SA, Lyons CR, Obrien K, Garner HR, Powdrill TF. Organism identification using a genome sequence-independent universal microarray probe set. Biotechniques. 37: 654-8, 660. PMID 15517977 DOI: 10.2144/04374Rr02  0.373
2004 Ng KW, Lawson J, Garner HR. PathoGene: a pathogen coding sequence discovery and analysis resource. Biotechniques. 37: 218, 220-2. PMID 15335212 DOI: 10.2144/04372St01  0.343
2004 Weil MR, Widlak P, Minna JD, Garner HR. Global survey of chromatin accessibility using DNA microarrays. Genome Research. 14: 1374-81. PMID 15231753 DOI: 10.1101/Gr.1396104  0.349
2004 Schageman JJ, Horton CJ, Niu S, Garner HR, Pertsemlidis A. ELXR: a resource for rapid exon-directed sequence analysis. Genome Biology. 5: R36. PMID 15128450 DOI: 10.1186/Gb-2004-5-5-R36  0.357
2003 Schageman JJ, Ferguson DA, Zang Q, Spencer JA, Huff JW, Graff JM, Lian Y, Garner HR, Pertsemlidis A. Reading the fine print of the human genome. Ieee Engineering in Medicine and Biology Magazine : the Quarterly Magazine of the Engineering in Medicine & Biology Society. 22: 105-8. PMID 12733468 DOI: 10.1109/Memb.2003.1195706  0.371
2003 Flood EM, Tang F, Horvath MM, Pertsemlidis A, Garner HR. SNPCEQer: detecting SNPs in sequences generated by the Beckman CEQ2000 DNA Analysis System. Biotechniques. 33: 814, 816, 818-20 pas. PMID 12398190 DOI: 10.2144/02334St05  0.362
2002 Kulkarni AV, Williams NS, Lian Y, Wren JD, Mittelman D, Pertsemlidis A, Garner HR. ARROGANT: an application to manipulate large gene collections. Bioinformatics (Oxford, England). 18: 1410-7. PMID 12424110 DOI: 10.1093/Bioinformatics/18.11.1410  0.384
2002 Balog RP, de Souza YE, Tang HM, DeMasellis GM, Gao B, Avila A, Gaban DJ, Mittelman D, Minna JD, Luebke KJ, Garner HR. Parallel assessment of CpG methylation by two-color hybridization with oligonucleotide arrays. Analytical Biochemistry. 309: 301-10. PMID 12413464 DOI: 10.1016/S0003-2697(02)00294-4  0.319
2002 Talaat AM, Howard ST, Hale W, Lyons R, Garner H, Johnston SA. Genomic DNA standards for gene expression profiling in Mycobacterium tuberculosis. Nucleic Acids Research. 30: e104. PMID 12384606 DOI: 10.1093/Nar/Gnf103  0.339
2002 Garner HR, Balog RP, Luebke KJ. The evolution of custom microarray manufacture. Ieee Engineering in Medicine and Biology Magazine : the Quarterly Magazine of the Engineering in Medicine & Biology Society. 21: 123-5. PMID 12222110 DOI: 10.1109/Memb.2002.1032650  0.302
2002 Weil MR, Macatee T, Garner HR. Toward a universal standard: comparing two methods for standardizing spotted microarray data. Biotechniques. 32: 1310-4. PMID 12074161 DOI: 10.2144/02326Mt01  0.335
2002 Wren JD, Mittelman DA, Garner HR. SIGNAL-Sequence Information and GeNomic AnaLysis. Computer Methods and Programs in Biomedicine. 68: 177-81. PMID 11932033 DOI: 10.1016/S0169-2607(01)00187-0  0.355
2002 Wren JD, Garner HR. Heuristics for Identification of Acronym-Definition Patterns within Text: Towards an Automated Construction of Comprehensive Acronym-Definition Dictionaries Methods of Information in Medicine. 41: 426-434. DOI: 10.1055/S-0038-1634373  0.304
2001 Forgacs E, Wren JD, Kamibayashi C, Kondo M, Xu XL, Markowitz S, Tomlinson GE, Muller CY, Gazdar AF, Garner HR, Minna JD. Searching for microsatellite mutations in coding regions in lung, breast, ovarian and colorectal cancers. Oncogene. 20: 1005-9. PMID 11314036 DOI: 10.1038/Sj.Onc.1204211  0.33
2001 Pertsemlidis A, Miller B, Pande A, Mittelman D, Schilling P, Wei MH, Lerman MI, Minna JD, Garner HR. PANORAMA: An Integrated Web-Based Sequence Analysis Tool and Its Role in Gene Discovery Genomics. 77: 208. DOI: 10.1006/Geno.2001.6634  0.34
2000 Pertsemlidis A, Pande A, Miller B, Schilling P, Wei MH, Lerman MI, Minna JD, Garner HR, Mittelman D. PANORAMA: an integrated Web-based sequence analysis tool and its role in gene discovery. Genomics. 70: 300-6. PMID 11161780 DOI: 10.1006/Geno.2000.6359  0.399
2000 Wren JD, Forgacs E, Fondon JW, Pertsemlidis A, Cheng SY, Gallardo T, Williams RS, Shohet RV, Minna JD, Garner HR. Repeat polymorphisms within gene regions: Phenotypic and evolutionary implications American Journal of Human Genetics. 67: 345-356. PMID 10889045 DOI: 10.1086/303013  0.353
1999 Jaklevic JM, Garner HR, Miller GA. Instrumentation for the genome project. Annual Review of Biomedical Engineering. 1: 649-78. PMID 11701503 DOI: 10.1146/Annurev.Bioeng.1.1.649  0.358
1998 Fondon JW, Mele GM, Brezinschek RI, Cummings D, Pande A, Wren J, O'Brien KM, Kupfer KC, Wei MH, Lerman M, Minna JD, Garner HR. Computerized polymorphic marker identification: experimental validation and a predicted human polymorphism catalog. Proceedings of the National Academy of Sciences of the United States of America. 95: 7514-9. PMID 9636181 DOI: 10.1073/Pnas.95.13.7514  0.358
1998 O'Brien KM, Schageman JJ, Evans GA, Garner HR. Reconstructing fragmented gel files created by Model 377 DNA Sequencers. Biotechniques. 24: 1004-5. PMID 9631194 DOI: 10.2144/98246Bc04  0.342
1998 O'Brien KM, Ironside MA, Athanasiou MC, Basit MA, Evans GA, Garner HR. Correcting data shifts in gel files created by Model 377 DNA Sequencers. Biotechniques. 24: 1002-3. PMID 9631193 DOI: 10.2144/98246Bc03  0.306
1998 Huang H, Garner HR. Gene Alert-a sequence search results keyword parser Ieee Engineering in Medicine and Biology Magazine. 17: 119-122. PMID 9548090 DOI: 10.1109/51.664040  0.329
1998 O’Brien KM, Wren J, Davé VK, Bai D, Anderson RD, Rayner S, Evans GA, Dabiri AE, Garner HR. ASTRAL, a hyperspectral imaging DNA sequencer Review of Scientific Instruments. 69: 2141-2146. DOI: 10.1063/1.1148913  0.319
1997 O'Brien KM, Fondon JW, Evans GA, Garner HR. Rescuing corrupted gel files from Model 377 and 373 DNA Sequencers. Biotechniques. 22: 1162-3. PMID 9187770 DOI: 10.2144/97226Bc05  0.319
1997 Li P, Kupfer KC, Davies CJ, Burbee D, Evans GA, Garner HR. PRIMO: A primer design program that applies base quality statistics for automated large-scale DNA sequencing. Genomics. 40: 476-85. PMID 9073516 DOI: 10.1006/Geno.1996.4560  0.336
1994 Garner H. Engineering in genomics-automating the Genome Center Ieee Engineering in Medicine and Biology Magazine. 13: 281-283. DOI: 10.1109/51.281695  0.351
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