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Barbara Dunn - Publications

Affiliations: 
Stanford University Medical School, Palo Alto, CA, United States 
Area:
Genome evolution, yeast
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Garge RK, Geck RC, Armstrong JO, Dunn B, Boutz DR, Battenhouse A, Leutert M, Dang V, Jiang P, Kwiatkowski D, Peiser T, McElroy H, Marcotte EM, Dunham MJ. Systematic Profiling of Ale Yeast Protein Dynamics across Fermentation and Repitching. G3 (Bethesda, Md.). PMID 38135291 DOI: 10.1093/g3journal/jkad293  0.63
2023 Garge RK, Geck RC, Armstrong JO, Dunn B, Boutz DR, Battenhouse A, Leutert M, Dang V, Jiang P, Kwiatkowski D, Peiser T, McElroy H, Marcotte EM, Dunham MJ. Systematic Profiling of Ale Yeast Protein Dynamics across Fermentation and Repitching. Biorxiv : the Preprint Server For Biology. PMID 37790497 DOI: 10.1101/2023.09.21.558736  0.627
2023 Muller G, de Godoy VR, Dário MG, Duval EH, Alves-Jr SL, Bücker A, Rosa CA, Dunn B, Sherlock G, Stambuk BU. Improved Sugarcane-Based Fermentation Processes by an Industrial Fuel-Ethanol Yeast Strain. Journal of Fungi (Basel, Switzerland). 9. PMID 37623574 DOI: 10.3390/jof9080803  0.61
2022 Choudhary K, Itzkovich Z, Alonso-Perez E, Bishara H, Dunn B, Sherlock G, Kupiec M. S. cerevisiae Cells Can Grow without the Pds5 Cohesin Subunit. Mbio. e0142022. PMID 35708277 DOI: 10.1128/mbio.01420-22  0.569
2019 Ng PC, Wong ED, MacPherson KA, Aleksander S, Argasinska J, Dunn B, Nash RS, Skrzypek MS, Gondwe F, Jha S, Karra K, Weng S, Miyasato S, Simison M, Engel SR, et al. Transcriptome visualization and data availability at the Saccharomyces Genome Database. Nucleic Acids Research. PMID 31612944 DOI: 10.1093/Nar/Gkz892  0.363
2018 Li Y, Venkataram S, Agarwala A, Dunn B, Petrov DA, Sherlock G, Fisher DS. Hidden Complexity of Yeast Adaptation under Simple Evolutionary Conditions. Current Biology : Cb. PMID 29429618 DOI: 10.1016/J.Cub.2018.01.009  0.562
2017 Wloch-Salamon DM, Tomala K, Aggeli D, Dunn B. Adaptive Roles of SSY1 and SIR3 During Cycles of Growth and Starvation in Saccharomyces cerevisiae Populations Enriched for Quiescent or Non-quiescent Cells. G3 (Bethesda, Md.). PMID 28450371 DOI: 10.1534/G3.117.041749  0.342
2016 Venkataram S, Dunn B, Li Y, Agarwala A, Chang J, Ebel ER, Geiler-Samerotte K, Hérissant L, Blundell JR, Levy SF, Fisher DS, Sherlock G, Petrov DA. Development of a Comprehensive Genotype-to-Fitness Map of Adaptation-Driving Mutations in Yeast. Cell. PMID 27594428 DOI: 10.1016/J.Cell.2016.08.002  0.584
2016 Sellis D, Kvitek DJ, Dunn B, Sherlock G, Petrov DA. Empirical Evidence for Heterozygote Advantage in Adapting Diploid Populations of Saccharomyces cerevisiae. Genetics. PMID 27194750 DOI: 10.1534/Genetics.115.185165  0.56
2015 U'Ren JM, Wisecaver JH, Paek AL, Dunn BL, Hurwitz BL. Draft Genome Sequence of the Ale-Fermenting Saccharomyces cerevisiae Strain GSY2239. Genome Announcements. 3. PMID 26205854 DOI: 10.1128/Genomea.00776-15  0.346
2015 Song G, Dickins BJ, Demeter J, Engel S, Gallagher J, Choe K, Dunn B, Snyder M, Cherry JM. Correction: AGAPE (Automated Genome Analysis PipelinE) for Pan-Genome Analysis of Saccharomyces cerevisiae. Plos One. 10: e0129184. PMID 26017550 DOI: 10.1371/Journal.Pone.0129184  0.341
2015 Song G, Dickins BJ, Demeter J, Engel S, Dunn B, Cherry JM. AGAPE (Automated Genome Analysis PipelinE) for pan-genome analysis of Saccharomyces cerevisiae. Plos One. 10: e0120671. PMID 25781462 DOI: 10.1371/Journal.Pone.0120671  0.464
2014 Gallagher JE, Zheng W, Rong X, Miranda N, Lin Z, Dunn B, Zhao H, Snyder MP. Divergence in a master variator generates distinct phenotypes and transcriptional responses. Genes & Development. 28: 409-21. PMID 24532717 DOI: 10.1101/Gad.228940.113  0.422
2013 Kroll E, Coyle S, Dunn B, Koniges G, Aragon A, Edwards J, Rosenzweig F. Starvation-associated genome restructuring can lead to reproductive isolation in yeast. Plos One. 8: e66414. PMID 23894280 DOI: 10.1371/Journal.Pone.0066414  0.401
2013 Bellon JR, Schmid F, Capone DL, Dunn BL, Chambers PJ. Introducing a new breed of wine yeast: interspecific hybridisation between a commercial Saccharomyces cerevisiae wine yeast and Saccharomyces mikatae. Plos One. 8: e62053. PMID 23614011 DOI: 10.1371/journal.pone.0062053  0.339
2013 Dunn B, Paulish T, Stanbery A, Piotrowski J, Koniges G, Kroll E, Louis EJ, Liti G, Sherlock G, Rosenzweig F. Recurrent rearrangement during adaptive evolution in an interspecific yeast hybrid suggests a model for rapid introgression. Plos Genetics. 9: e1003366. PMID 23555283 DOI: 10.1371/Journal.Pgen.1003366  0.619
2013 Richter CL, Dunn B, Sherlock G, Pugh T. Comparative metabolic footprinting of a large number of commercial wine yeast strains in Chardonnay fermentations. Fems Yeast Research. 13: 394-410. PMID 23528123 DOI: 10.1111/1567-1364.12046  0.636
2012 Piotrowski JS, Nagarajan S, Kroll E, Stanbery A, Chiotti KE, Kruckeberg AL, Dunn B, Sherlock G, Rosenzweig F. Different selective pressures lead to different genomic outcomes as newly-formed hybrid yeasts evolve. Bmc Evolutionary Biology. 12: 46. PMID 22471618 DOI: 10.1186/1471-2148-12-46  0.56
2012 Schwartz K, Wenger JW, Dunn B, Sherlock G. APJ1 and GRE3 homologs work in concert to allow growth in xylose in a natural Saccharomyces sensu stricto hybrid yeast. Genetics. 191: 621-32. PMID 22426884 DOI: 10.1534/Genetics.112.140053  0.665
2012 Dunn B, Richter C, Kvitek DJ, Pugh T, Sherlock G. Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments. Genome Research. 22: 908-24. PMID 22369888 DOI: 10.1101/Gr.130310.111  0.653
2010 Duval EH, Alves SL, Dunn B, Sherlock G, Stambuk BU. Microarray karyotyping of maltose-fermenting Saccharomyces yeasts with differing maltotriose utilization profiles reveals copy number variation in genes involved in maltose and maltotriose utilization. Journal of Applied Microbiology. 109: 248-59. PMID 20070441 DOI: 10.1111/J.1365-2672.2009.04656.X  0.64
2009 Stambuk BU, Dunn B, Alves SL, Duval EH, Sherlock G. Industrial fuel ethanol yeasts contain adaptive copy number changes in genes involved in vitamin B1 and B6 biosynthesis. Genome Research. 19: 2271-8. PMID 19897511 DOI: 10.1101/Gr.094276.109  0.609
2008 Dunn B, Sherlock G. Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus. Genome Research. 18: 1610-23. PMID 18787083 DOI: 10.1101/Gr.076075.108  0.646
2005 Dunn B, Levine RP, Sherlock G. Microarray karyotyping of commercial wine yeast strains reveals shared, as well as unique, genomic signatures. Bmc Genomics. 6: 53. PMID 15833139 DOI: 10.1186/1471-2164-6-53  0.622
1997 Cherry JM, Ball C, Weng S, Juvik G, Schmidt R, Adler C, Dunn B, Dwight S, Riles L, Mortimer RK, Botstein D. Genetic and physical maps of Saccharomyces cerevisiae Nature. 387: 67-73. DOI: 10.1038/387s067  0.388
1993 Dunn B, Stearns T, Botstein D. Specificity domains distinguish the Ras-related GTPases Ypt1 and Sec4. Nature. 362: 563-5. PMID 8464499 DOI: 10.1038/362563A0  0.575
1988 Norris D, Dunn B, Osley MA. The effect of histone gene deletions on chromatin structure in Saccharomyces cerevisiae. Science (New York, N.Y.). 242: 759-61. PMID 2847314 DOI: 10.1126/Science.2847314  0.396
1984 Dunn B, Szauter P, Pardue ML, Szostak JW. Transfer of yeast telomeres to linear plasmids by recombination. Cell. 39: 191-201. PMID 6091911 DOI: 10.1016/0092-8674(84)90205-8  0.49
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