| Year |
Citation |
Score |
| 2023 |
Pascual-Carreras E, Marín-Barba M, Castillo-Lara S, Coronel-Córdoba P, Magri MS, Wheeler GN, Gómez-Skarmeta JL, Abril JF, Saló E, Adell T. Wnt/β-catenin signalling is required for pole-specific chromatin remodeling during planarian regeneration. Nature Communications. 14: 298. PMID 36653403 DOI: 10.1038/s41467-023-35937-y |
0.742 |
|
| 2022 |
Garcia-Giralt N, Roca-Ayats N, Abril JF, Martinez-Gil N, Ovejero D, Castañeda S, Nogues X, Grinberg D, Balcells S, Rabionet R. Gene Network of Susceptibility to Atypical Femoral Fractures Related to Bisphosphonate Treatment. Genes. 13. PMID 35052486 DOI: 10.3390/genes13010146 |
0.509 |
|
| 2020 |
Martínez-Puchol S, Rusiñol M, Fernández-Cassi X, Timoneda N, Itarte M, Andrés C, Antón A, Abril JF, Girones R, Bofill-Mas S. Characterisation of the sewage virome: comparison of NGS tools and occurrence of significant pathogens. The Science of the Total Environment. 713: 136604. PMID 31955099 DOI: 10.1016/J.Scitotenv.2020.136604 |
0.765 |
|
| 2019 |
Rusiñol M, Martínez-Puchol S, Timoneda N, Fernández-Cassi X, Pérez-Cataluña A, Fernández-Bravo A, Moreno-Mesonero L, Moreno Y, Alonso JL, Figueras MJ, Abril JF, Bofill-Mas S, Girones R. Metagenomic analysis of viruses, bacteria and protozoa in irrigation water. International Journal of Hygiene and Environmental Health. 224: 113440. PMID 31978735 DOI: 10.1016/J.Ijheh.2019.113440 |
0.737 |
|
| 2019 |
Arenas-Galnares R, Castillo-Lara S, Toulis V, Boloc D, Gonzàlez-Duarte R, Marfany G, Abril JF. RPGeNet v2.0: expanding the universe of retinal disease gene interactions network. Database : the Journal of Biological Databases and Curation. 2019. PMID 31712826 DOI: 10.1093/Database/Baz120 |
0.757 |
|
| 2019 |
Castillo-Lara S, Pascual-Carreras E, Abril JF. PlanExp: intuitive integration of complex RNA-seq datasets with planarian omics resources. Bioinformatics (Oxford, England). PMID 31647529 DOI: 10.1093/Bioinformatics/Btz802 |
0.778 |
|
| 2018 |
Castillo-Lara S, Abril JF. PPaxe: easy extraction of protein occurrence and interactions from the scientific literature. Bioinformatics (Oxford, England). PMID 30500875 DOI: 10.1093/Bioinformatics/Bty988 |
0.755 |
|
| 2018 |
Roca-Ayats N, Ng PY, Garcia-Giralt N, Falcó-Mascaró M, Cozar M, Abril JF, Quesada Gómez JM, Prieto-Alhambra D, Nogués X, Dunford JE, Russell RG, Baron R, Grinberg D, Balcells S, Díez-Pérez A. Functional characterization of a GGPPS variant identified in atypical femoral fracture patients and delineation of the role of GGPPS in bone-relevant cell types. Journal of Bone and Mineral Research : the Official Journal of the American Society For Bone and Mineral Research. PMID 30184270 DOI: 10.1002/Jbmr.3580 |
0.654 |
|
| 2018 |
Rusiñol M, Fernandez-Cassi X, Timoneda N, Carratalà A, Abril JF, Silvera C, Figueras MJ, Gelati E, Rodó X, Kay D, Wyn-Jones P, Bofill-Mas S, Girones R. Corrigendum to "Evidence of viral dissemination and seasonality in a Mediterranean river catchment: implications for water pollution management" [J. Environ. Manag. 159 (2015) 58-67]. Journal of Environmental Management. PMID 29807682 DOI: 10.1016/J.Jenvman.2018.05.047 |
0.717 |
|
| 2018 |
Castillo-Lara S, Abril JF. PlanNET: homology-based predicted interactome for multiple planarian transcriptomes. Bioinformatics (Oxford, England). 34: 1016-1023. PMID 29186384 DOI: 10.1093/Bioinformatics/Btx738 |
0.775 |
|
| 2018 |
Fernandez-Cassi X, Timoneda N, Martínez-Puchol S, Rusiñol M, Rodriguez-Manzano J, Figuerola N, Bofill-Mas S, Abril JF, Girones R. Metagenomics for the study of viruses in urban sewage as a tool for public health surveillance. The Science of the Total Environment. 618: 870-880. PMID 29108696 DOI: 10.1016/J.Scitotenv.2017.08.249 |
0.753 |
|
| 2017 |
Gonzales-Gustavson E, Timoneda N, Fernandez-Cassi X, Caballero A, Abril JF, Buti M, Rodriguez-Frias F, Girones R. Identification of sapovirus GV.2, astrovirus VA3 and novel anelloviruses in serum from patients with acute hepatitis of unknown aetiology. Plos One. 12: e0185911. PMID 28982120 DOI: 10.1371/Journal.Pone.0185911 |
0.735 |
|
| 2017 |
Fernandez-Cassi X, Timoneda N, Gonzales-Gustavson E, Abril JF, Bofill-Mas S, Girones R. A metagenomic assessment of viral contamination on fresh parsley plants irrigated with fecally tainted river water. International Journal of Food Microbiology. 257: 80-90. PMID 28646670 DOI: 10.1016/J.Ijfoodmicro.2017.06.001 |
0.749 |
|
| 2017 |
Roca-Ayats N, Balcells S, Garcia-Giralt N, Falcó-Mascaró M, Martínez-Gil N, Abril JF, Urreizti R, Dopazo J, Quesada-Gómez JM, Nogués X, Mellibovsky L, Prieto-Alhambra D, Dunford JE, Javaid MK, Russell RG, et al. GGPS1 Mutation and Atypical Femoral Fractures with Bisphosphonates. The New England Journal of Medicine. 376: 1794-1795. PMID 28467865 DOI: 10.1056/Nejmc1612804 |
0.66 |
|
| 2017 |
Hjelmsø MH, Hellmér M, Fernandez-Cassi X, Timoneda N, Lukjancenko O, Seidel M, Elsässer D, Aarestrup FM, Löfström C, Bofill-Mas S, Abril JF, Girones R, Schultz AC. Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing. Plos One. 12: e0170199. PMID 28099518 DOI: 10.1371/Journal.Pone.0170199 |
0.75 |
|
| 2015 |
Gabre JL, Martinez P, Nilsson Sköld H, Ortega-Martinez O, Abril JF. The coelomic epithelium transcriptome from a clonal sea star, Coscinasterias muricata. Marine Genomics. PMID 26321383 DOI: 10.1016/J.Margen.2015.07.010 |
0.518 |
|
| 2015 |
Boloc D, Castillo-Lara S, Marfany G, Gonzàlez-Duarte R, Abril JF. Distilling a Visual Network of Retinitis Pigmentosa Gene-Protein Interactions to Uncover New Disease Candidates. Plos One. 10: e0135307. PMID 26267445 DOI: 10.1371/Journal.Pone.0135307 |
0.768 |
|
| 2015 |
Rusiñol M, Fernandez-Cassi X, Timoneda N, Carratalà A, Abril JF, Silvera C, Figueras MJ, Gelati E, Rodó X, Kay D, Wyn-Jones P, Bofill-Mas S, Girones R. Evidence of viral dissemination and seasonality in a Mediterranean river catchment: Implications for water pollution management. Journal of Environmental Management. 159: 58-67. PMID 26046988 DOI: 10.1016/J.Jenvman.2015.05.019 |
0.741 |
|
| 2015 |
Rodríguez-Esteban G, González-Sastre A, Rojo-Laguna JI, Saló E, Abril JF. Digital gene expression approach over multiple RNA-Seq data sets to detect neoblast transcriptional changes in Schmidtea mediterranea. Bmc Genomics. 16: 361. PMID 25952370 DOI: 10.1186/S12864-015-1533-1 |
0.792 |
|
| 2015 |
Perea-Atienza E, Gavilán B, Chiodin M, Abril JF, Hoff KJ, Poustka AJ, Martinez P. The nervous system of Xenacoelomorpha: a genomic perspective. The Journal of Experimental Biology. 218: 618-28. PMID 25696825 DOI: 10.1242/Jeb.110379 |
0.537 |
|
| 2014 |
Blanco E, Abril JF. Gene Annotation, visualization tools Dictionary of Bioinformatics and Computational Biology. DOI: 10.1002/9780471650126.Dob0919 |
0.308 |
|
| 2014 |
Blanco E, Abril JF. GASP (Genome Annotation Assessment Project, E‐GASP) Dictionary of Bioinformatics and Computational Biology. DOI: 10.1002/9780471650126.Dob0913 |
0.31 |
|
| 2013 |
Steijger T, Abril JF, Engström PG, Kokocinski F, Hubbard TJ, Guigó R, Harrow J, Bertone P. Assessment of transcript reconstruction methods for RNA-seq. Nature Methods. 10: 1177-84. PMID 24185837 DOI: 10.1038/Nmeth.2714 |
0.331 |
|
| 2013 |
Isolani ME, Abril JF, Saló E, Deri P, Bianucci AM, Batistoni R. Planarians as a model to assess in vivo the role of matrix metalloproteinase genes during homeostasis and regeneration. Plos One. 8: e55649. PMID 23405188 DOI: 10.1371/Journal.Pone.0055649 |
0.333 |
|
| 2011 |
Garanto A, Riera M, Pomares E, Permanyer J, de Castro-Miró M, Sava F, Abril JF, Marfany G, Gonzàlez-Duarte R. High transcriptional complexity of the retinitis pigmentosa CERKL gene in human and mouse. Investigative Ophthalmology & Visual Science. 52: 5202-14. PMID 21508105 DOI: 10.1167/Iovs.10-7101 |
0.758 |
|
| 2011 |
Fernández-Taboada E, Rodríguez-Esteban G, Saló E, Abril JF. A proteomics approach to decipher the molecular nature of planarian stem cells. Bmc Genomics. 12: 133. PMID 21356107 DOI: 10.1186/1471-2164-12-133 |
0.752 |
|
| 2010 |
Abril JF, Cebrià F, Rodríguez-Esteban G, Horn T, Fraguas S, Calvo B, Bartscherer K, Saló E. Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea. Bmc Genomics. 11: 731. PMID 21194483 DOI: 10.1186/1471-2164-11-731 |
0.787 |
|
| 2009 |
Irimia M, Roy SW, Neafsey DE, Abril JF, Garcia-Fernandez J, Koonin EV. Complex selection on 5' splice sites in intron-rich organisms. Genome Research. 19: 2021-7. PMID 19745111 DOI: 10.1101/Gr.089276.108 |
0.616 |
|
| 2009 |
Blanco E, Abril JF. Computational gene annotation in new genome assemblies using GeneID Methods in Molecular Biology. 537: 243-261. PMID 19378148 DOI: 10.1007/978-1-59745-251-9_12 |
0.391 |
|
| 2009 |
Saló E, Abril JF, Adell T, Cebrià F, Eckelt K, Fernandez-Taboada E, Handberg-Thorsager M, Iglesias M, Molina MD, Rodríguez-Esteban G. Planarian regeneration: achievements and future directions after 20 years of research. The International Journal of Developmental Biology. 53: 1317-27. PMID 19247944 DOI: 10.1387/Ijdb.072414Es |
0.68 |
|
| 2007 |
Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, ... ... Abril JF, et al. The diploid genome sequence of an individual human. Plos Biology. 5: e254. PMID 17803354 DOI: 10.1371/Journal.Pbio.0050254 |
0.375 |
|
| 2007 |
Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, ... ... Abril JF, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 447: 799-816. PMID 17571346 DOI: 10.1038/Nature05874 |
0.401 |
|
| 2006 |
Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, et al. EGASP: the human ENCODE Genome Annotation Assessment Project. Genome Biology. 7: S2.1-31. PMID 16925836 DOI: 10.1186/Gb-2006-7-S1-S2 |
0.377 |
|
| 2004 |
Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, Scherer S, Scott G, Steffen D, Worley KC, Burch PE, Okwuonu G, Hines S, Lewis L, DeRamo C, Delgado O, ... ... Abril JF, et al. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 428: 493-521. PMID 15057822 DOI: 10.1038/Nature02426 |
0.393 |
|
| 2003 |
Abril JF, Guigó R, Wiehe T. gff2aplot: Plotting sequence comparisons. Bioinformatics (Oxford, England). 19: 2477-9. PMID 14668236 DOI: 10.1093/Bioinformatics/Btg334 |
0.317 |
|
| 2003 |
Guigo R, Dermitzakis ET, Agarwal P, Ponting CP, Parra G, Reymond A, Abril JF, Keibler E, Lyle R, Ucla C, Antonarakis SE, Brent MR. Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes. Proceedings of the National Academy of Sciences of the United States of America. 100: 1140-5. PMID 12552088 DOI: 10.1073/Pnas.0337561100 |
0.419 |
|
| 2003 |
Parra G, Agarwal P, Abril JF, Wiehe T, Fickett JW, Guigó R. Comparative gene prediction in human and mouse. Genome Research. 13: 108-17. PMID 12529313 DOI: 10.1101/Gr.871403 |
0.375 |
|
| 2002 |
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, et al. Initial sequencing and comparative analysis of the mouse genome. Nature. 420: 520-62. PMID 12466850 DOI: 10.1038/Nature01262 |
0.412 |
|
| 2002 |
Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, Wides R, Salzberg SL, Loftus B, Yandell M, Majoros WH, Rusch DB, ... ... Abril JF, et al. The genome sequence of the malaria mosquito Anopheles gambiae. Science (New York, N.Y.). 298: 129-49. PMID 12364791 DOI: 10.1126/Science.1076181 |
0.406 |
|
| 2002 |
Glöckner G, Eichinger L, Szafranski K, Pachebat JA, Bankier AT, Dear PH, Lehmann R, Baumgart C, Parra G, Abril JF, Guigó R, Kumpf K, Tunggal B, Cox E, Quail MA, et al. Sequence and analysis of chromosome 2 of Dictyostelium discoideum. Nature. 418: 79-85. PMID 12097910 DOI: 10.1038/Nature00847 |
0.348 |
|
| 2001 |
Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, ... ... Abril JF, et al. The sequence of the human genome. Science (New York, N.Y.). 291: 1304-51. PMID 11181995 DOI: 10.1126/Science.1058040 |
0.391 |
|
| 2000 |
Abril JF, Guigó R. gff2ps: visualizing genomic annotations. Bioinformatics (Oxford, England). 16: 743-4. PMID 11099262 DOI: 10.1093/Bioinformatics/16.8.743 |
0.336 |
|
| 2000 |
Thomson TM, Lozano JJ, Loukili N, Carrió R, Serras F, Cormand B, Valeri M, Díaz VM, Abril J, Burset M, Merino J, Macaya A, Corominas M, Guigó R. Fusion of the human gene for the polyubiquitination coeffector UEV1 with Kua, a newly identified gene. Genome Research. 10: 1743-56. PMID 11076860 DOI: 10.1101/Gr.Gr-1405R |
0.721 |
|
| 2000 |
Guigó R, Agarwal P, Abril JF, Burset M, Fickett JW. An assessment of gene prediction accuracy in large DNA sequences. Genome Research. 10: 1631-42. PMID 11042160 DOI: 10.1101/Gr.122800 |
0.748 |
|
| 2000 |
Reese MG, Hartzell G, Harris NL, Ohler U, Abril JF, Lewis SE. Genome annotation assessment in Drosophila melanogaster Genome Research. 10: 483-501. PMID 10779488 DOI: 10.1101/Gr.10.4.483 |
0.402 |
|
| 2000 |
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, George RA, Lewis SE, Richards S, Ashburner M, Henderson SN, ... ... Abril JF, et al. The genome sequence of Drosophila melanogaster. Science (New York, N.Y.). 287: 2185-95. PMID 10731132 DOI: 10.1126/Science.287.5461.2185 |
0.407 |
|
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