| Year |
Citation |
Score |
| 2024 |
Sehgal A, Ziaei Jam H, Shen A, Gymrek M. Genome-wide detection of somatic mosaicism at short tandem repeats. Bioinformatics (Oxford, England). 40. PMID 39078205 DOI: 10.1093/bioinformatics/btae485 |
0.46 |
|
| 2024 |
Ziaei Jam H, Zook JM, Javadzadeh S, Park J, Sehgal A, Gymrek M. LongTR: genome-wide profiling of genetic variation at tandem repeats from long reads. Genome Biology. 25: 176. PMID 38965568 DOI: 10.1186/s13059-024-03319-2 |
0.443 |
|
| 2024 |
English AC, Dolzhenko E, Ziaei Jam H, McKenzie SK, Olson ND, De Coster W, Park J, Gu B, Wagner J, Eberle MA, Gymrek M, Chaisson MJP, Zook JM, Sedlazeck FJ. Analysis and benchmarking of small and large genomic variants across tandem repeats. Nature Biotechnology. PMID 38671154 DOI: 10.1038/s41587-024-02225-z |
0.512 |
|
| 2024 |
Jam HZ, Zook JM, Javadzadeh S, Park J, Sehgal A, Gymrek M. Genome-wide profiling of genetic variation at tandem repeat from long reads. Biorxiv : the Preprint Server For Biology. PMID 38328152 DOI: 10.1101/2024.01.20.576266 |
0.441 |
|
| 2023 |
Margoliash J, Fuchs S, Li Y, Zhang X, Massarat A, Goren A, Gymrek M. Polymorphic short tandem repeats make widespread contributions to blood and serum traits. Cell Genomics. 3: 100458. PMID 38116119 DOI: 10.1016/j.xgen.2023.100458 |
0.4 |
|
| 2023 |
Sehgal A, Ziaei-Jam H, Shen A, Gymrek M. Genome-wide detection of somatic mosaicism at short tandem repeats. Biorxiv : the Preprint Server For Biology. PMID 38045311 DOI: 10.1101/2023.11.22.568371 |
0.484 |
|
| 2023 |
English A, Dolzhenko E, Jam HZ, Mckenzie S, Olson ND, De Coster W, Park J, Gu B, Wagner J, Eberle MA, Gymrek M, Chaisson MJP, Zook JM, Sedlazeck FJ. Benchmarking of small and large variants across tandem repeats. Biorxiv : the Preprint Server For Biology. PMID 37961319 DOI: 10.1101/2023.10.29.564632 |
0.486 |
|
| 2023 |
Ziaei Jam H, Li Y, DeVito R, Mousavi N, Ma N, Lujumba I, Adam Y, Maksimov M, Huang B, Dolzhenko E, Qiu Y, Kakembo FE, Joseph H, Onyido B, Adeyemi J, ... ... Gymrek M, et al. A deep population reference panel of tandem repeat variation. Nature Communications. 14: 6711. PMID 37872149 DOI: 10.1038/s41467-023-42278-3 |
0.537 |
|
| 2023 |
Lundström OS, Adriaan Verbiest M, Xia F, Jam HZ, Zlobec I, Anisimova M, Gymrek M. WebSTR: A Population-wide Database of Short Tandem Repeat Variation in Humans. Journal of Molecular Biology. 435: 168260. PMID 37678708 DOI: 10.1016/j.jmb.2023.168260 |
0.544 |
|
| 2023 |
Massarat A, Gymrek M, McStay B, Jónsson H. Human pangenome supports analysis of complex genomic regions. Nature. 617: 256-258. PMID 37165235 DOI: 10.1038/d41586-023-01490-3 |
0.364 |
|
| 2023 |
Maksimov MO, Wu C, Ashbrook DG, Villani F, Colonna V, Mousavi N, Ma N, Lu L, Pritchard JK, Goren A, Williams RW, Palmer AA, Gymrek M. A novel quantitative trait locus implicates in the propensity for genome-wide short tandem repeat expansions in mice. Genome Research. PMID 37127331 DOI: 10.1101/gr.277576.122 |
0.46 |
|
| 2023 |
Jam HZ, Li Y, DeVito R, Mousavi N, Ma N, Lujumba I, Adam Y, Maksimov M, Huang B, Dolzhenko E, Qiu Y, Kakembo FE, Joseph H, Onyido B, Adeyemi J, ... ... Gymrek M, et al. A deep population reference panel of tandem repeat variation. Biorxiv : the Preprint Server For Biology. PMID 36945429 DOI: 10.1101/2023.03.09.531600 |
0.537 |
|
| 2023 |
Massarat AR, Lamkin M, Reeve C, Williams AL, D'Antonio M, Gymrek M. Haptools: a toolkit for admixture and haplotype analysis. Bioinformatics (Oxford, England). PMID 36847450 DOI: 10.1093/bioinformatics/btad104 |
0.365 |
|
| 2022 |
Verbiest M, Maksimov M, Jin Y, Anisimova M, Gymrek M, Bilgin Sonay T. Mutation and selection processes regulating short tandem repeats give rise to genetic and phenotypic diversity across species. Journal of Evolutionary Biology. PMID 36289560 DOI: 10.1111/jeb.14106 |
0.509 |
|
| 2022 |
Mortazavi M, Ren Y, Saini S, Antaki D, St Pierre CL, Williams A, Sohni A, Wilkinson MF, Gymrek M, Sebat J, Palmer AA. SNPs, short tandem repeats, and structural variants are responsible for differential gene expression across C57BL/6 and C57BL/10 substrains. Cell Genomics. 2. PMID 35720252 DOI: 10.1016/j.xgen.2022.100102 |
0.392 |
|
| 2022 |
Sun T, Cruz GI, Mousavi N, Marić I, Brewer A, Wong RJ, Aghaeepour N, Sayed N, Wu JC, Stevenson DK, Leonard SA, Gymrek M, Winn VD. HMOX1 Genetic Polymorphisms Display Ancestral Diversity and May Be Linked to Hypertensive Disorders in Pregnancy. Reproductive Sciences (Thousand Oaks, Calif.). PMID 35697922 DOI: 10.1007/s43032-022-01001-1 |
0.364 |
|
| 2021 |
Pinsach-Abuin ML, Del Olmo B, Pérez-Agustin A, Mates J, Allegue C, Iglesias A, Ma Q, Merkurjev D, Konovalov S, Zhang J, Sheikh F, Telenti A, Brugada J, Brugada R, Gymrek M, et al. Analysis of Brugada syndrome loci reveals that fine-mapping clustered GWAS hits enhances the annotation of disease-relevant variants. Cell Reports. Medicine. 2: 100250. PMID 33948580 DOI: 10.1016/j.xcrm.2021.100250 |
0.325 |
|
| 2021 |
Bakhtiari M, Park J, Ding YC, Shleizer-Burko S, Neuhausen SL, Halldórsson BV, Stefánsson K, Gymrek M, Bafna V. Variable number tandem repeats mediate the expression of proximal genes. Nature Communications. 12: 2075. PMID 33824302 DOI: 10.1038/s41467-021-22206-z |
0.39 |
|
| 2021 |
Mitra I, Huang B, Mousavi N, Ma N, Lamkin M, Yanicky R, Shleizer-Burko S, Lohmueller KE, Gymrek M. Patterns of de novo tandem repeat mutations and their role in autism. Nature. 589: 246-250. PMID 33442040 DOI: 10.1038/s41586-020-03078-7 |
0.416 |
|
| 2020 |
Mousavi N, Margoliash J, Pusarla N, Saini S, Yanicky R, Gymrek M. TRTools: a toolkit for genome-wide analysis of tandem repeats. Bioinformatics (Oxford, England). PMID 32805020 DOI: 10.1093/Bioinformatics/Btaa736 |
0.478 |
|
| 2019 |
Breuss MW, Antaki D, George RD, Kleiber M, James KN, Ball LL, Hong O, Mitra I, Yang X, Wirth SA, Gu J, Garcia CAB, Gujral M, Brandler WM, Musaev D, ... ... Gymrek M, et al. Autism risk in offspring can be assessed through quantification of male sperm mosaicism. Nature Medicine. PMID 31873310 DOI: 10.1038/S41591-019-0711-0 |
0.402 |
|
| 2019 |
Fotsing SF, Margoliash J, Wang C, Saini S, Yanicky R, Shleizer-Burko S, Goren A, Gymrek M. The impact of short tandem repeat variation on gene expression. Nature Genetics. 51: 1652-1659. PMID 31676866 DOI: 10.1038/S41588-019-0521-9 |
0.498 |
|
| 2019 |
Musa J, Cidre-Aranaz F, Aynaud MM, Orth MF, Knott MML, Mirabeau O, Mazor G, Varon M, Hölting TLB, Grossetête S, Gartlgruber M, Surdez D, Gerke JS, Ohmura S, Marchetto A, ... ... Gymrek M, et al. Cooperation of cancer drivers with regulatory germline variants shapes clinical outcomes. Nature Communications. 10: 4128. PMID 31511524 DOI: 10.1038/S41467-019-12071-2 |
0.44 |
|
| 2019 |
Mousavi N, Shleizer-Burko S, Yanicky R, Gymrek M. Profiling the genome-wide landscape of tandem repeat expansions. Nucleic Acids Research. 47: e90. PMID 31194863 DOI: 10.1093/Nar/Gkz501 |
0.596 |
|
| 2018 |
Saini S, Mitra I, Mousavi N, Fotsing SF, Gymrek M. A reference haplotype panel for genome-wide imputation of short tandem repeats. Nature Communications. 9: 4397. PMID 30353011 DOI: 10.1038/S41467-018-06694-0 |
0.465 |
|
| 2018 |
Bakhtiari M, Shleizer-Burko S, Gymrek M, Bansal V, Bafna V. Targeted genotyping of variable number tandem repeats with adVNTR. Genome Research. PMID 30352806 DOI: 10.1101/Gr.235119.118 |
0.55 |
|
| 2018 |
Kaplanis J, Gordon A, Shor T, Weissbrod O, Geiger D, Wahl M, Gershovits M, Markus B, Sheikh M, Gymrek M, Bhatia G, MacArthur DG, Price AL, Erlich Y. Quantitative analysis of population-scale family trees with millions of relatives. Science (New York, N.Y.). PMID 29496957 DOI: 10.1126/Science.Aam9309 |
0.662 |
|
| 2017 |
Gymrek M, Willems T, Reich D, Erlich Y. Interpreting short tandem repeat variations in humans using mutational constraint. Nature Genetics. 49: 1495-1501. PMID 28892063 DOI: 10.1038/Ng.3952 |
0.791 |
|
| 2017 |
Rusu V, Hoch E, Mercader JM, Tenen DE, Gymrek M, Hartigan CR, DeRan M, von Grotthuss M, Fontanillas P, Spooner A, Guzman G, Deik AA, Pierce KA, Dennis C, Clish CB, et al. Type 2 Diabetes Variants Disrupt Function of SLC16A11 through Two Distinct Mechanisms. Cell. 170: 199-212.e20. PMID 28666119 DOI: 10.1016/J.Cell.2017.06.011 |
0.512 |
|
| 2017 |
Willems T, Zielinski D, Yuan J, Gordon A, Gymrek M, Erlich Y. Genome-wide profiling of heritable and de novo STR variations. Nature Methods. PMID 28436466 DOI: 10.1038/Nmeth.4267 |
0.773 |
|
| 2017 |
Gymrek M. A genomic view of short tandem repeats. Current Opinion in Genetics & Development. 44: 9-16. PMID 28213161 DOI: 10.1016/J.Gde.2017.01.012 |
0.628 |
|
| 2016 |
Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, Skoglund P, Lazaridis I, Sankararaman S, Fu Q, Rohland N, et al. The Simons Genome Diversity Project: 300 genomes from 142 diverse populations. Nature. PMID 27654912 DOI: 10.1038/Nature18964 |
0.8 |
|
| 2016 |
Willems T, Gymrek M, Poznik GD, Tyler-Smith C, Erlich Y. Population-Scale Sequencing Data Enable Precise Estimates of Y-STR Mutation Rates. American Journal of Human Genetics. 98: 919-933. PMID 27126583 DOI: 10.1016/J.Ajhg.2016.04.001 |
0.794 |
|
| 2016 |
Poznik GD, Xue Y, Mendez FL, Willems TF, Massaia A, Wilson Sayres MA, Ayub Q, McCarthy SA, Narechania A, Kashin S, Chen Y, Banerjee R, Rodriguez-Flores JL, Cerezo M, Shao H, ... Gymrek M, et al. Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences. Nature Genetics. PMID 27111036 DOI: 10.1038/Ng.3559 |
0.799 |
|
| 2016 |
Quilez J, Guilmatre A, Garg P, Highnam G, Gymrek M, Erlich Y, Joshi RS, Mittelman D, Sharp AJ. Polymorphic tandem repeats within gene promoters act as modifiers of gene expression and DNA methylation in humans. Nucleic Acids Research. PMID 27060133 DOI: 10.1093/Nar/Gkw219 |
0.699 |
|
| 2016 |
Willems T, Gymrek M, Poznik GD, Tyler-Smith C, Erlich Y. Population-Scale Sequencing Data Enable Precise Estimates of Y-STR Mutation Rates American Journal of Human Genetics. DOI: 10.1016/j.ajhg.2016.04.001 |
0.747 |
|
| 2015 |
Gymrek M, Willems T, Guilmatre A, Zeng H, Markus B, Georgiev S, Daly MJ, Price AL, Pritchard JK, Sharp AJ, Erlich Y. Abundant contribution of short tandem repeats to gene expression variation in humans. Nature Genetics. PMID 26642241 DOI: 10.1038/Ng.3461 |
0.796 |
|
| 2014 |
Gymrek M. PyBamView: a browser-based application for viewing short read alignments. Bioinformatics (Oxford, England). 30: 3405-7. PMID 25147359 DOI: 10.1093/Bioinformatics/Btu565 |
0.307 |
|
| 2014 |
Willems T, Gymrek M, Highnam G, Mittelman D, Erlich Y. The landscape of human STR variation. Genome Research. 24: 1894-904. PMID 25135957 DOI: 10.1101/Gr.177774.114 |
0.815 |
|
| 2014 |
Zielinski D, Markus B, Sheikh M, Gymrek M, Chu C, Zaks M, Srinivasan B, Hoffman JD, Aizenbud D, Erlich Y. OTX2 duplication is implicated in hemifacial microsomia. Plos One. 9: e96788. PMID 24816892 DOI: 10.1371/Journal.Pone.0096788 |
0.79 |
|
| 2014 |
Breker M, Gymrek M, Moldavski O, Schuldiner M. LoQAtE--Localization and Quantitation ATlas of the yeast proteomE. A new tool for multiparametric dissection of single-protein behavior in response to biological perturbations in yeast. Nucleic Acids Research. 42: D726-30. PMID 24150937 DOI: 10.1093/Nar/Gkt933 |
0.308 |
|
| 2013 |
Gymrek M, Erlich Y. Profiling short tandem repeats from short reads. Methods in Molecular Biology (Clifton, N.J.). 1038: 113-35. PMID 23872972 DOI: 10.1007/978-1-62703-514-9_7 |
0.704 |
|
| 2013 |
Gymrek M, McGuire AL, Golan D, Halperin E, Erlich Y. Identifying personal genomes by surname inference. Science (New York, N.Y.). 339: 321-4. PMID 23329047 DOI: 10.1126/Science.1229566 |
0.743 |
|
| 2012 |
Zielinski D, Gymrek M, Erlich Y. Back to the family: a renewed approach to rare variant studies. Genome Medicine. 4: 97. PMID 23253160 DOI: 10.1186/Gm398 |
0.759 |
|
| 2012 |
Gymrek M, Golan D, Rosset S, Erlich Y. lobSTR: A short tandem repeat profiler for personal genomes. Genome Research. 22: 1154-62. PMID 22522390 DOI: 10.1101/Gr.135780.111 |
0.763 |
|
| 2012 |
Gymrek M, Golan D, Rosset S, Erlich Y. lobSTR: a novel pipeline for short tandem repeats profiling in personal genomes F1000research. 3. DOI: 10.7490/F1000Research.1090187.1 |
0.722 |
|
| 2011 |
Ram O, Goren A, Amit I, Shoresh N, Yosef N, Ernst J, Kellis M, Gymrek M, Issner R, Coyne M, Durham T, Zhang X, Donaghey J, Epstein CB, Regev A, et al. Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells. Cell. 147: 1628-39. PMID 22196736 DOI: 10.1016/J.Cell.2011.09.057 |
0.344 |
|
| 2011 |
Gymrek M, Erlich Y. Using DNA sequencers as stethoscopes. Genome Medicine. 3: 73. PMID 22103962 DOI: 10.1186/Gm289 |
0.7 |
|
| 2010 |
Naegle KM, Gymrek M, Joughin BA, Wagner JP, Welsch RE, Yaffe MB, Lauffenburger DA, White FM. PTMScout, a Web resource for analysis of high throughput post-translational proteomics studies. Molecular & Cellular Proteomics : McP. 9: 2558-70. PMID 20631208 DOI: 10.1074/Mcp.M110.001206 |
0.314 |
|
| 2010 |
Goren A, Ozsolak F, Shoresh N, Ku M, Adli M, Hart C, Gymrek M, Zuk O, Regev A, Milos PM, Bernstein BE. Chromatin profiling by directly sequencing small quantities of immunoprecipitated DNA. Nature Methods. 7: 47-9. PMID 19946276 DOI: 10.1038/Nmeth.1404 |
0.399 |
|
| Show low-probability matches. |