| Year |
Citation |
Score |
| 2023 |
Diesh C, Stevens GJ, Xie P, De Jesus Martinez T, Hershberg EA, Leung A, Guo E, Dider S, Zhang J, Bridge C, Hogue G, Duncan A, Morgan M, Flores T, Bimber BN, et al. JBrowse 2: a modular genome browser with views of synteny and structural variation. Genome Biology. 24: 74. PMID 37069644 DOI: 10.1186/s13059-023-02914-z |
0.338 |
|
| 2023 |
Tsue AF, Kania EE, Lei DQ, Fields R, McGann CD, Hershberg E, Deng X, Kihiu M, Ong SE, Disteche CM, Kugel S, Beliveau BJ, Schweppe DK, Shechner DM. Oligonucleotide-directed proximity-interactome mapping (O-MAP): A unified method for discovering RNA-interacting proteins, transcripts and genomic loci . Biorxiv : the Preprint Server For Biology. PMID 36711823 DOI: 10.1101/2023.01.19.524825 |
0.586 |
|
| 2023 |
Generoso SF, Neguembor MV, Hershberg EA, Sadreyev RI, Kurimoto K, Yabuta Y, Ricci R, Audergon P, Bauer M, Saitou M, Hochedlinger K, Beliveau BJ, Cosma MP, Lee JT, Payer B. Cohesin controls X chromosome structure remodeling and X-reactivation during mouse iPSC-reprogramming. Proceedings of the National Academy of Sciences of the United States of America. 120: e2213810120. PMID 36669113 DOI: 10.1073/pnas.2213810120 |
0.574 |
|
| 2023 |
De Jesus Martinez T, Hershberg EA, Guo E, Stevens GJ, Diesh C, Xie P, Bridge C, Cain S, Haw R, Buels RM, Stein LD, Holmes IH. JBrowse Jupyter: a Python interface to JBrowse 2. Bioinformatics (Oxford, England). 39. PMID 36648320 DOI: 10.1093/bioinformatics/btad032 |
0.343 |
|
| 2021 |
Hershberg EA, Camplisson CK, Close JL, Attar S, Chern R, Liu Y, Akilesh S, Nicovich PR, Beliveau BJ. Author Correction: PaintSHOP enables the interactive design of transcriptome- and genome-scale oligonucleotide FISH experiments. Nature Methods. PMID 34480162 DOI: 10.1038/s41592-021-01273-6 |
0.629 |
|
| 2021 |
Hershberg EA, Camplisson CK, Close JL, Attar S, Chern R, Liu Y, Akilesh S, Nicovich PR, Beliveau BJ. PaintSHOP enables the interactive design of transcriptome- and genome-scale oligonucleotide FISH experiments. Nature Methods. PMID 34226720 DOI: 10.1038/s41592-021-01187-3 |
0.649 |
|
| 2021 |
Hershberg EA, Stevens G, Diesh C, Xie P, De Jesus Martinez T, Buels R, Stein L, Holmes I. JBrowseR: An R Interface to the JBrowse 2 Genome Browser. Bioinformatics (Oxford, England). PMID 34196689 DOI: 10.1093/bioinformatics/btab459 |
0.365 |
|
| 2020 |
Nguyen HQ, Chattoraj S, Castillo D, Nguyen SC, Nir G, Lioutas A, Hershberg EA, Martins NMC, Reginato PL, Hannan M, Beliveau BJ, Church GM, Daugharthy ER, Marti-Renom MA, Wu CT. 3D mapping and accelerated super-resolution imaging of the human genome using in situ sequencing. Nature Methods. PMID 32719531 DOI: 10.1038/S41592-020-0890-0 |
0.639 |
|
| 2020 |
Passaro M, Martinovic M, Bevilacqua V, Hershberg EA, Rossetti G, Beliveau BJ, Bonnal RJP, Pagani M. OligoMinerApp: a web-server application for the design of genome-scale oligonucleotide in situ hybridization probes through the flexible OligoMiner environment. Nucleic Acids Research. 48: W332-W339. PMID 32313927 DOI: 10.1093/nar/gkaa251 |
0.646 |
|
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