| Year |
Citation |
Score |
| 2023 |
Xie W, Lama L, Yang X, Kuryavyi V, Bhattacharya S, Nudelman I, Yang G, Ouerfelli O, Glickman JF, Jones RA, Tuschl T, Patel DJ. Arabinose- and xylose-modified analogs of 2',3'-cGAMP act as STING agonists. Cell Chemical Biology. PMID 37536341 DOI: 10.1016/j.chembiol.2023.07.002 |
0.361 |
|
| 2019 |
Jia N, Jones R, Yang G, Ouerfelli O, Patel DJ. CRISPR-Cas III-A Csm6 CARF Domain Is a Ring Nuclease Triggering Stepwise cA Cleavage with ApA>p Formation Terminating RNase Activity. Molecular Cell. PMID 31326273 DOI: 10.1016/J.Molcel.2019.06.014 |
0.431 |
|
| 2019 |
Jia N, Jones R, Sukenick G, Patel DJ. Second Messenger cA Formation within the Composite Csm1 Palm Pocket of Type III-A CRISPR-Cas Csm Complex and Its Release Path. Molecular Cell. PMID 31326272 DOI: 10.1016/J.Molcel.2019.06.013 |
0.417 |
|
| 2018 |
Matter B, Seiler CL, Murphy K, Ming X, Zhao J, Lindgren B, Jones R, Tretyakova N. Mapping Three Guanine Oxidation Products along DNA Following Exposure to Three Types of Reactive Oxygen Species. Free Radical Biology & Medicine. PMID 29702150 DOI: 10.1016/J.Freeradbiomed.2018.04.561 |
0.3 |
|
| 2016 |
Meehan RE, Torgerson CD, Gaffney BL, Jones RA, Strobel SA. Nuclease-resistant c-di-AMP derivatives that differentially recognize RNA and protein receptors. Biochemistry. PMID 26789423 DOI: 10.1021/Acs.Biochem.5B00965 |
0.317 |
|
| 2015 |
Ren A, Wang XC, Kellenberger CA, Rajashankar KR, Jones RA, Hammond MC, Patel DJ. Structural basis for molecular discrimination by a 3',3'-cGAMP sensing riboswitch. Cell Reports. 11: 1-12. PMID 25818298 DOI: 10.1016/J.Celrep.2015.03.004 |
0.452 |
|
| 2014 |
Ming X, Matter B, Song M, Veliath E, Shanley R, Jones R, Tretyakova N. Mapping structurally defined guanine oxidation products along DNA duplexes: influence of local sequence context and endogenous cytosine methylation. Journal of the American Chemical Society. 136: 4223-35. PMID 24571128 DOI: 10.1021/Ja411636J |
0.311 |
|
| 2014 |
Gaffney BL, Jones RA. Synthesis of c-di-GMP analogs with thiourea, urea, carbodiimide, and guanidinium linkages. Organic Letters. 16: 158-61. PMID 24313312 DOI: 10.1021/Ol403154W |
0.346 |
|
| 2013 |
Gao P, Ascano M, Zillinger T, Wang W, Dai P, Serganov AA, Gaffney BL, Shuman S, Jones RA, Deng L, Hartmann G, Barchet W, Tuschl T, Patel DJ. Structure-function analysis of STING activation by c[G(2',5')pA(3',5')p] and targeting by antiviral DMXAA. Cell. 154: 748-62. PMID 23910378 DOI: 10.1016/J.Cell.2013.07.023 |
0.476 |
|
| 2013 |
Gao P, Ascano M, Wu Y, Barchet W, Gaffney BL, Zillinger T, Serganov AA, Liu Y, Jones RA, Hartmann G, Tuschl T, Patel DJ. Cyclic [G(2',5')pA(3',5')p] is the metazoan second messenger produced by DNA-activated cyclic GMP-AMP synthase. Cell. 153: 1094-107. PMID 23647843 DOI: 10.1016/J.Cell.2013.04.046 |
0.484 |
|
| 2013 |
Gaffney BL, Stebbins ND, Jones RA. Synthesis of biotinylated c-di-gmp and c-di-amp using click conjugation. Nucleosides, Nucleotides & Nucleic Acids. 32: 1-16. PMID 23360291 DOI: 10.1080/15257770.2012.748196 |
0.303 |
|
| 2013 |
Shanahan CA, Gaffney BL, Jones RA, Strobel SA. Identification of c-di-GMP derivatives resistant to an EAL domain phosphodiesterase. Biochemistry. 52: 365-77. PMID 23256840 DOI: 10.1021/Bi301510V |
0.305 |
|
| 2010 |
Hou X, Wang G, Gaffney BL, Jones RA. Preparation of DNA and RNA fragments containing guanine N(2)-thioalkyl tethers. Current Protocols in Nucleic Acid Chemistry / Edited by Serge L. Beaucage ... [Et Al.]. Unit 5.8. PMID 20517990 DOI: 10.1002/0471142700.Nc0508S41 |
0.371 |
|
| 2009 |
Hou X, Wang G, Gaffney BL, Jones RA. Synthesis of guanosine and deoxyguanosine phosphoramidites with cross-linkable thioalkyl tethers for direct incorporation into RNA and DNA. Nucleosides, Nucleotides & Nucleic Acids. 28: 1076-94. PMID 20183575 DOI: 10.1080/15257770903368385 |
0.373 |
|
| 2008 |
Gaffney BL, Jones RA. Regioselective 2'-silylation of purine ribonucleosides for phosphoramidite RNA synthesis. Current Protocols in Nucleic Acid Chemistry. Unit 2.8. PMID 18428841 DOI: 10.1002/0471142700.Nc0208S06 |
0.306 |
|
| 2007 |
Matter B, Guza R, Zhao J, Li ZZ, Jones R, Tretyakova N. Sequence distribution of acetaldehyde-derived N2-ethyl-dG adducts along duplex DNA. Chemical Research in Toxicology. 20: 1379-87. PMID 17867647 DOI: 10.1021/Tx7001146 |
0.348 |
|
| 2006 |
Dai J, Dexheimer TS, Chen D, Carver M, Ambrus A, Jones RA, Yang D. An intramolecular G-quadruplex structure with mixed parallel/antiparallel G-strands formed in the human BCL-2 promoter region in solution. Journal of the American Chemical Society. 128: 1096-8. PMID 16433524 DOI: 10.1021/Ja055636A |
0.321 |
|
| 2005 |
Fan Y, Gaffney BL, Jones RA. RNA GG x UU motif binds K+ but not Mg2+. Journal of the American Chemical Society. 127: 17588-9. PMID 16351072 DOI: 10.1021/Ja0555522 |
0.308 |
|
| 2005 |
Park S, Anderson C, Loeber R, Seetharaman M, Jones R, Tretyakova N. Interstrand and intrastrand DNA-DNA cross-linking by 1,2,3,4-diepoxybutane: role of stereochemistry. Journal of the American Chemical Society. 127: 14355-65. PMID 16218630 DOI: 10.1021/Ja051979X |
0.328 |
|
| 2005 |
Ambrus A, Chen D, Dai J, Jones RA, Yang D. Solution structure of the biologically relevant G-quadruplex element in the human c-MYC promoter. Implications for G-quadruplex stabilization. Biochemistry. 44: 2048-58. PMID 15697230 DOI: 10.1021/Bi048242P |
0.326 |
|
| 2004 |
Deng H, Cahill SM, Abad JL, Lewandowicz A, Callender RH, Schramm VL, Jones RA. Active site contacts in the purine nucleoside phosphorylase--hypoxanthine complex by NMR and ab initio calculations. Biochemistry. 43: 15966-74. PMID 15595853 DOI: 10.1021/Bi048167I |
0.316 |
|
| 2004 |
Wang G, Gaffney BL, Jones RA. Differential binding of Mg2+, Zn2+, and Cd2+ at two sites in a hammerhead ribozyme motif, determined by 15N NMR. Journal of the American Chemical Society. 126: 8908-9. PMID 15264817 DOI: 10.1021/Ja049804V |
0.327 |
|
| 2004 |
Fan Y, Gaffney BL, Jones RA. Transient silylation of the guanosine O6 and amino groups facilitates N-acylation. Organic Letters. 6: 2555-7. PMID 15255689 DOI: 10.1021/Ol049096I |
0.355 |
|
| 2004 |
Matter B, Wang G, Jones R, Tretyakova N. Formation of diastereomeric benzo[a]pyrene diol epoxide-guanine adducts in p53 gene-derived DNA sequences Chemical Research in Toxicology. 17: 731-741. PMID 15206894 DOI: 10.1021/Tx049974L |
0.304 |
|
| 2004 |
Shallop AJ, Gaffney BL, Jones RA. Use of both direct and indirect 13C tags for probing nitrogen interactions in hairpin ribozyme models by 15N NMR. Nucleosides, Nucleotides & Nucleic Acids. 23: 273-80. PMID 15043153 DOI: 10.1081/Ncn-120027834 |
0.347 |
|
| 2004 |
Ziegel R, Shallop A, Upadhyaya P, Jones R, Tretyakova N. Endogenous 5-methylcytosine protects neighboring guanines from N7 and O6-methylation and O6-pyridyloxobutylation by the tobacco carcinogen 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone. Biochemistry. 43: 540-9. PMID 14717610 DOI: 10.1021/Bi035259J |
0.358 |
|
| 2003 |
Ye Y, Muller JG, Luo W, Mayne CL, Shallop AJ, Jones RA, Burrows CJ. Formation of 13C-, 15N-, and 18O-Labeled Guanidinohydantoin from Guanosine Oxidation with Singlet Oxygen. Implications for Structure and Mechanism Journal of the American Chemical Society. 125: 13926-13927. PMID 14611206 DOI: 10.1021/Ja0378660 |
0.329 |
|
| 2003 |
Shallop AJ, Gaffney BL, Jones RA. Use of 13C as an indirect tag in 15N specifically labeled nucleosides. Syntheses of [8-13C-1,7,NH2-15N3]adenosine, -guanosine, and their deoxy analogues. The Journal of Organic Chemistry. 68: 8657-61. PMID 14575499 DOI: 10.1021/Jo0345446 |
0.335 |
|
| 2003 |
Barbieri CM, Li TK, Guo S, Wang G, Shallop AJ, Pan W, Yang G, Gaffney BL, Jones RA, Pilch DS. Aminoglycoside complexation with a DNA.RNA hybrid duplex: the thermodynamics of recognition and inhibition of RNA processing enzymes. Journal of the American Chemical Society. 125: 6469-77. PMID 12785787 DOI: 10.1021/Ja021371D |
0.306 |
|
| 2003 |
Ziegel R, Shallop A, Jones R, Tretyakova NY. K-ras gene sequence effects on the formation of 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK)-DNA adducts. Chemical Research in Toxicology. 16: 541-550. PMID 12703972 DOI: 10.1021/Tx025619O |
0.358 |
|
| 2002 |
Gaffney BL, Jones RA. Syntheses of specifically 15N-labeled adenosine and guanosine. Current Protocols in Nucleic Acid Chemistry / Edited by Serge L. Beaucage ... [Et Al.]. Unit 1.6. PMID 18428884 DOI: 10.1002/0471142700.Nc0106S10 |
0.356 |
|
| 2002 |
Tretyakova N, Matter B, Jones R, Shallop A. Formation of benzo[a]pyrene diol epoxide-DNA adducts at specific guanines within K-ras and p53 gene sequences: stable isotope-labeling mass spectrometry approach. Biochemistry. 41: 9535-44. PMID 12135376 DOI: 10.1021/Bi025540I |
0.337 |
|
| 2002 |
Gu F, Stillwell WG, Wishnok JS, Shallop AJ, Jones RA, Tannenbaum SR. Peroxynitrite-induced reactions of synthetic oligo 2'-deoxynucleotides and DNA containing guanine: formation and stability of a 5-guanidino-4-nitroimidazole lesion. Biochemistry. 41: 7508-18. PMID 12044185 DOI: 10.1021/Bi020148Q |
0.335 |
|
| 2001 |
Veldhuyzen WF, Shallop AJ, Jones RA, Rokita SE. Thermodynamic versus kinetic products of DNA alkylation as modeled by reaction of deoxyadenosine. Journal of the American Chemical Society. 123: 11126-32. PMID 11697955 DOI: 10.1021/Ja011686D |
0.326 |
|
| 2001 |
Kuryavyi V, Majumdar A, Shallop A, Chernichenko N, Skripkin E, Jones R, Patel DJ. A double chain reversal loop and two diagonal loops define the architecture of a unimolecular DNA quadruplex containing a pair of stacked G(syn)-G(syn)-G(anti)-G(anti) tetrads flanked by a G-(T-T) Triad and a T-T-T triple. Journal of Molecular Biology. 310: 181-94. PMID 11419945 DOI: 10.1006/Jmbi.2001.4759 |
0.476 |
|
| 2000 |
Kettani A, Gorin A, Majumdar A, Hermann T, Skripkin E, Zhao H, Jones R, Patel DJ. A dimeric DNA interface stabilized by stacked A.(G.G.G.G).A hexads and coordinated monovalent cations. Journal of Molecular Biology. 297: 627-44. PMID 10731417 DOI: 10.1006/Jmbi.2000.3524 |
0.457 |
|
| 2000 |
Kuryavyi V, Kettani A, Wang W, Jones R, Patel DJ. A diamond-shaped zipper-like DNA architecture containing triads sandwiched between mismatches and tetrads. Journal of Molecular Biology. 295: 455-69. PMID 10623538 DOI: 10.1006/Jmbi.1999.3345 |
0.486 |
|
| 1999 |
Abad JL, Gaffney BL, Jones RA. 15N-Multilabeled Adenine and Guanine Nucleosides. Syntheses of [1,3,NH(2)-(15)N(3)]- and [2-(13)C-1,3,NH(2)-(15)N(3)]-Labeled Adenosine, Guanosine, 2'-Deoxyadenosine, and 2'-Deoxyguanosine. The Journal of Organic Chemistry. 64: 6575-6582. PMID 11674659 DOI: 10.1021/Jo982372K |
0.348 |
|
| 1999 |
Lorigan GA, McNamara R, Jones RA, Opella SJ. Magnitudes and Orientations of the 15N Chemical Shift Tensor of [1-15N]-2′-Deoxyguanosine Determined on a Polycrystalline Sample by Two-Dimensional Solid-State NMR Spectroscopy Journal of Magnetic Resonance. 140: 315-319. PMID 10497038 DOI: 10.1006/Jmre.1999.1822 |
0.312 |
|
| 1999 |
Kettani A, Bouaziz S, Skripkin E, Majumdar A, Wang W, Jones RA, Patel DJ. Interlocked mismatch-aligned arrowhead DNA motifs. Structure (London, England : 1993). 7: 803-15. PMID 10425682 DOI: 10.1016/S0969-2126(99)80104-X |
0.479 |
|
| 1999 |
Lin CH, Wang W, Jones RA, Patel DJ. Formation of an amino-acid-binding pocket through adaptive zippering-up of a large DNA hairpin loop. Chemistry & Biology. 5: 555-72. PMID 9818148 DOI: 10.1016/S1074-5521(98)90114-4 |
0.477 |
|
| 1999 |
Wang W, Song Q, Jones RA. Nucleoside recovery in DNA and RNA synthesis Tetrahedron Letters. 40: 8971-8974. DOI: 10.1016/S0040-4039(99)01914-0 |
0.309 |
|
| 1999 |
Song Q, Wang W, Fischer A, Zhang X, Gaffney BL, Jones RA. High yield protection of purine ribonucleosides for phosphoramidite RNA synthesis Tetrahedron Letters. 40: 4153-4156. DOI: 10.1016/S0040-4039(99)00733-9 |
0.317 |
|
| 1998 |
Kettani A, Bouaziz S, Gorin A, Zhao H, Jones RA, Patel DJ. Solution structure of a Na cation stabilized DNA quadruplex containing G.G.G.G and G.C.G.C tetrads formed by G-G-G-C repeats observed in adeno-associated viral DNA. Journal of Molecular Biology. 282: 619-36. PMID 9737926 DOI: 10.1006/Jmbi.1998.2030 |
0.467 |
|
| 1998 |
Pagano AR, Zhao H, Shallop aA, Jones RA. Syntheses of [1,7-15N2]- and [1,7,NH2-15N3]Adenosine and 2‘-Deoxyadenosine via an N1-Alkoxy-Mediated Dimroth Rearrangement Journal of Organic Chemistry. 63: 3213-3217. DOI: 10.1021/Jo9718152 |
0.323 |
|
| 1998 |
Zhang X, Gaffney BL, Jones RA. 15N NMR of RNA Fragments Containing Specifically Labeled Tandem GA Pairs Journal of the American Chemical Society. 120: 6625-6626. DOI: 10.1021/Ja9738384 |
0.358 |
|
| 1997 |
Zhang X, Gaffney BL, Jones RA. RNA synthesis using a universal, base-stable allyl linker. Nucleic Acids Research. 25: 3980-3. PMID 9321646 DOI: 10.1093/Nar/25.20.3980 |
0.328 |
|
| 1997 |
Kettani A, Bouaziz S, Wang W, Jones RA, Patel DJ. Bombyx mori single repeat telomeric DNA sequence forms a G-quadruplex capped by base triads. Nature Structural Biology. 4: 382-9. PMID 9145109 DOI: 10.1038/Nsb0597-382 |
0.499 |
|
| 1997 |
Jiang F, Patel DJ, Zhang X, Zhao H, Jones RA. Specific labeling approaches to guanine and adenine imino and amino proton assignments in the AMP-RNA aptamer complex. Journal of Biomolecular Nmr. 9: 55-62. PMID 9081544 DOI: 10.1023/A:1018623601946 |
0.498 |
|
| 1997 |
Zhao H, Pagano AR, Wang W, Shallop A, Gaffney BL, Jones RA. Use of a13C Atom To Differentiate Two15N-Labeled Nucleosides. Syntheses of [15NH2]-Adenosine, [1,NH2-15N2]- and [2-13C-1,NH2-15N2]-Guanosine, and [1,7,NH2-15N3]- and [2-13C-1,7,NH2-15N3]-2‘-Deoxyguanosine The Journal of Organic Chemistry. 62: 7832-7835. DOI: 10.1021/Jo971206U |
0.335 |
|
| 1997 |
Zhang X, Gaffney BL, Jones RA. 15N NMR of a Specifically Labeled RNA Fragment Containing Intrahelical GU Wobble Pairs Journal of the American Chemical Society. 119: 6432-6433. DOI: 10.1021/Ja970370W |
0.335 |
|
| 1996 |
Jiang F, Kumar RA, Jones RA, Patel DJ. Structural Basis of RNA Folding and Recognition in an AMP-RNA Aptamer Complex Nature. 382: 183-186. PMID 8700212 DOI: 10.1038/382183A0 |
0.471 |
|
| 1996 |
Zhang X, Jones RA. A universal allyl linker for solid-phase synthesis Tetrahedron Letters. 37: 3789-3790. DOI: 10.1016/0040-4039(96)00714-9 |
0.333 |
|
| 1995 |
Vojtechovsky J, Eaton MD, Gaffney B, Jones R, Berman HM. Structure of a new crystal form of a DNA dodecamer containing T.(O6Me)G base pairs. Biochemistry. 34: 16632-40. PMID 8527436 DOI: 10.1021/Bi00051A011 |
0.307 |
|
| 1995 |
Gaffney BL, Kung P, Wang C, Jones RA. Nitrogen-15-labeled oligodeoxynucleotides. 8. Use of 15N NMR to probe Hoogsteen hydrogen bonding at guanine and adenine N7 atoms of a DNA triplex Journal of the American Chemical Society. 117: 12281-12283. DOI: 10.1021/Ja00154A030 |
0.314 |
|
| 1995 |
Mullah B, Andrus A, Zhao H, Jones RA. Oxidative conversion of N-dimethylformamidine nucleosides to N-cyano nucleosides Tetrahedron Letters. 36: 4373-4376. DOI: 10.1016/0040-4039(95)00816-U |
0.329 |
|
| 1993 |
Erie DA, Suri AK, Breslauer KJ, Jones RA, Olson WK. Theoretical predictions of DNA hairpin loop conformations: correlations with thermodynamic and spectroscopic data. Biochemistry. 32: 436-54. PMID 8422353 DOI: 10.1021/Bi00053A008 |
0.328 |
|
| 1993 |
Rhee Y, Wang C, Gaffney BL, Jones RA. Nitrogen-15-labeled oligodeoxynucleotides. 6. Use of nitrogen-15 NMR to probe binding of netropsin and distamycin to {d[CGCGAATTCGCG]}2 Journal of the American Chemical Society. 115: 8742-8746. DOI: 10.1021/Ja00072A029 |
0.341 |
|
| 1993 |
Goswami B, Gaffney BL, Jones RA. Nitrogen-15-labeled oligodeoxynucleotides. 5. Use of 15N NMR to probe H-bonding in an O6MeG.cntdot.T base pair Journal of the American Chemical Society. 115: 3832-3833. DOI: 10.1021/Ja00062A082 |
0.312 |
|
| 1992 |
Schneider B, Ginell SL, Jones R, Gaffney B, Berman HM. Crystal and molecular structure of a DNA fragment containing a 2-aminoadenine modification: The relationship between conformation, packing, and hydration in Z-DNA hexamers Biochemistry. 31: 9622-9628. PMID 1390739 DOI: 10.1021/Bi00155A014 |
0.329 |
|
| 1992 |
Gao H, Fathi R, Gaffney BL, Goswami B, Kung PP, Rhee Y, Jin R, Jones RA. 6-O-(Pentafluorophenyl)-2'-deoxyguanosine: a versatile synthon for nucleoside and oligonucleotide synthesis The Journal of Organic Chemistry. 57: 6954-6959. DOI: 10.1021/Jo00051A051 |
0.323 |
|
| 1992 |
Gaffney BL, Wang C, Jones RA. Nitrogen-15-labeled oligodeoxynucleotides. 4. Tetraplex formation of d[G(15N7)GTTTTTGG and d[T(15N7)GGGT] monitored by proton detected nitrogen-15 NMR Journal of the American Chemical Society. 114: 4047-4050. DOI: 10.1021/Ja00037A005 |
0.303 |
|
| 1992 |
Kung PP, Jones RA. H-phosphonate DNA synthesis without amino protection Tetrahedron Letters. 33: 5869-5872. DOI: 10.1016/S0040-4039(00)61075-4 |
0.347 |
|
| 1991 |
Wang Y, Jin R, Gaffney B, Jones RA, Breslauer KJ. Characterization by 1H NMR of glycosidic conformations in the tetramolecular complex formed by d(GGTTTTTGG). Nucleic Acids Research. 19: 4619-22. PMID 1891352 DOI: 10.1093/Nar/19.17.4619 |
0.332 |
|
| 1991 |
Wang C, Gao H, Gaffney BL, Jones RA. Nitrogen-15-labeled oligodeoxynucleotides. 3. Protonation of the adenine N1 in the A.cntdot.C and A.cntdot.G mispairs of the duplexes {d[CG(15N1)AGAATTCCCG]}2 and {d[CGGGAATTC(15N1)ACG]}2 Journal of the American Chemical Society. 113: 5486-5488. DOI: 10.1021/Ja00014A068 |
0.35 |
|
| 1991 |
Wang C, Gao X, Jones RA. Nitrogen-15-labeled oligodeoxynucleotides. 2. Solvent isotope effects on the chemical shift of the adenine N1 in an A.cntdot.T base pair Journal of the American Chemical Society. 113: 1448-1450. DOI: 10.1021/Ja00004A075 |
0.302 |
|
| 1991 |
Goswami B, Jones RA. Nitrogen-15-labeled deoxynucleosides. 4. Synthesis of [1-15N] and [2-15N]-labeled 2'-deoxyguanosines Journal of the American Chemical Society. 113: 644-647. DOI: 10.1021/Ja00002A037 |
0.317 |
|
| 1991 |
Kung PP, Jones RA. One-Flask Syntheses of 6-Thioguanosine and 2′-Deoxy-6-Thioguanosine Tetrahedron Letters. 32: 3919-3922. DOI: 10.1016/0040-4039(91)80589-X |
0.303 |
|
| 1990 |
Ginell SL, Kuzmich S, Jones RA, Berman HM. Crystal and molecular structure of a DNA duplex containing the carcinogenic lesion O6-methylguanine Biochemistry. 29: 10461-10465. PMID 2271657 DOI: 10.1021/Bi00498A005 |
0.348 |
|
| 1990 |
Jin RZ, Breslauer KJ, Jones RA, Gaffney BL. Tetraplex formation of a guanine-containing nonameric DNA fragment. Science (New York, N.Y.). 250: 543-6. PMID 2237404 DOI: 10.1126/Science.2237404 |
0.333 |
|
| 1990 |
Gaffney BL, Kung PP, Jones RA. Nitrogen-15-labeled deoxynucleosides. 2. Synthesis of 7-15N-labeled deoxyadenosine, deoxyguanosine, and related deoxynucleosides Journal of the American Chemical Society. 112: 6748-6749. DOI: 10.1021/Ja00174A065 |
0.315 |
|
| 1990 |
Reza F, Bhaswati G, Pei-Pei K, Gaffney BL, Jones RA. Synthesis of 6-substituted 2′-deoxyguanosine derivatives using trifluoroacetic anhydride in pyridine Tetrahedron Letters. 31: 319-321. DOI: 10.1016/S0040-4039(00)94543-X |
0.317 |
|
| 1989 |
Gaffney BL, Jones RA. Thermodynamic comparison of the base pairs formed by the carcinogenic lesion O6-methylguanine with reference both to Watson-Crick pairs and to mismatched pairs. Biochemistry. 28: 5881-9. PMID 2775739 DOI: 10.1021/Bi00440A026 |
0.326 |
|
| 1989 |
Erie DA, Jones RA, Olson WK, Sinha NK, Breslauer KJ. Melting behavior of a covalently closed, single-stranded, circular DNA. Biochemistry. 28: 268-73. PMID 2706250 DOI: 10.1021/Bi00427A037 |
0.315 |
|
| 1988 |
Senior MM, Jones RA, Breslauer KJ. Influence of loop residues on the relative stabilities of DNA hairpin structures. Proceedings of the National Academy of Sciences of the United States of America. 85: 6242-6. PMID 3413094 DOI: 10.1073/Pnas.85.17.6242 |
0.31 |
|
| 1987 |
Erie D, Sinha N, Olson W, Jones R, Breslauer K. A dumbbell-shaped, double-hairpin structure of DNA: A thermodynamic investigation Biochemistry. 26: 7150-7159. PMID 3427065 DOI: 10.1021/Bi00396A042 |
0.314 |
|
| 1987 |
Gao X, Jones RA. Synthesis and15N NMR of d[CGT(15N6)ACG] and d[CGT(CGT)(15N1)ACG] Nucleosides and Nucleotides. 6: 433-435. DOI: 10.1080/07328318708056248 |
0.326 |
|
| 1987 |
Gao X, Jones RA. Nitrogen-15-labeled oligodeoxynucleotides. Characterization by nitrogen-15 NMR of d[CGTACG] containing 15N6 or 15N1 labeled deoxyadenosine Journal of the American Chemical Society. 109: 3169-3171. DOI: 10.1021/Ja00244A064 |
0.581 |
|
| 1987 |
Gao X, Jones RA. Nitrogen-15 labeled deoxynucleosides. Synthesis of 15N6-and 15N1-deoxyadenosines from deoxyadenosine Journal of the American Chemical Society. 109: 1275-1278. DOI: 10.1021/Ja00238A063 |
0.577 |
|
| 1986 |
Patel DJ, Shapiro L, Kozlowski SA, Gaffney BL, Kuzmich S, Jones RA. Covalent carcinogenic lesions in DNA: NMR studies of O6-methylguanosine containing oligonucleotide duplexes. Biochimie. 67: 861-86. PMID 4084607 DOI: 10.1016/S0300-9084(85)80180-2 |
0.536 |
|
| 1986 |
Patel DJ, Shapiro L, Kozlowski SA, Gaffney BL, Jones RA. Structural studies of the O6meG.C interaction in the d(C-G-C-G-A-A-T-T-C-O6meG-C-G) duplex. Biochemistry. 25: 1027-36. PMID 3964658 DOI: 10.1021/Bi00353A012 |
0.478 |
|
| 1986 |
Scicchitano D, Jones RA, Kuzmich S, Gaffney B, Lasko DD, Essigmann JM, Pegg AE. Repair of oligodeoxynucleotides containing o-methylguanine by o-alkylguanine-dna-alkyltransferase Carcinogenesis. 7: 1383-1386. PMID 3731392 DOI: 10.1093/Carcin/7.8.1383 |
0.32 |
|
| 1986 |
Patel DJ, Shapiro L, Kozlowski SA, Gaffney BL, Jones RA. Covalent carcinogenic O6-methylguanosine lesions in DNA. Structural studies of the O6 meG X A and O6meG X G interactions in dodecanucleotide duplexes. Journal of Molecular Biology. 188: 677-92. PMID 3016288 DOI: 10.1016/S0022-2836(86)80014-6 |
0.478 |
|
| 1986 |
Gao X, Gaffney BL, Hadden S, Jones RA. Transient protection. 2. One-flask synthesis of 6-O-[(4-nitrophenyl)ethyl]-2'-deoxyguanosine nucleosides The Journal of Organic Chemistry. 51: 755-758. DOI: 10.1021/Jo00355A038 |
0.565 |
|
| 1986 |
GAO X, GAFFNEY BL, HADDEN S, JONES RA. ChemInform Abstract: Transient Protection. Part 2. One-Flask Synthesis of 6-O-[(4-Nitrophenyl)ethyl]- 2′-deoxyguanosine Nucleosides. Chemischer Informationsdienst. 17. DOI: 10.1002/Chin.198637320 |
0.575 |
|
| 1985 |
Gao X, Gaffney BL, Senior M, Riddle RR, Jones RA. Methylation of thymine residues during oligonucleotide synthesis. Nucleic Acids Research. 13: 573-84. PMID 4000926 DOI: 10.1093/Nar/13.2.573 |
0.569 |
|
| 1984 |
Gaffney BL, Marky LA, Jones RA. Synthesis and characterization of a set of four dodecadeoxyribonucleoside undecaphosphates containing O6-methylguanine opposite adenine, cytosine, guanine, and thymine Biochemistry. 23: 5686-5691. PMID 6525333 DOI: 10.1021/Bi00319A004 |
0.391 |
|
| 1984 |
Gaffney BL, Marky LA, Jones RA. The influence of the purine 2-amino group on DNA conformation and stability-II. Synthesis and physical characterization of d[CGT(2-NH2)ACG], d[CGU(2-NH2)ACG], and d[CGT(2-NH2)AT(2-NH2)ACG] Tetrahedron. 40: 3-13. DOI: 10.1016/0040-4020(84)85098-X |
0.352 |
|
| 1983 |
Kuzmich S, Marky LA, Jones RA. Specifically alkylated DNA fragments. Synthesis and physical characterization of D[cGC(o2Me)GCG]and D[cGT(o6Me) GCG] Nucleic Acids Research. 11: 3393-3404. PMID 6856460 DOI: 10.1093/Nar/11.10.3393 |
0.367 |
|
| 1982 |
Kuzmich S, Marky LA, Jones RA. Synthesis and physical characterization of the self-complementary, alternating pyrimidine/purine hexanucleotide d[CGTACG] Nucleic Acids Research. 10: 6265-6271. PMID 7177847 DOI: 10.1093/Nar/10.20.6265 |
0.315 |
|
| 1982 |
Gaffney BL, Marky LA, Jones RA. The influence of the purine 2-amino group on DNA conformation and stability. Synthesis and conformational analysis of d[T(2-aminoA)]3 Nucleic Acids Research. 10: 4351-4361. PMID 7122239 DOI: 10.1093/Nar/10.14.4351 |
0.338 |
|
| 1982 |
Gaffney B, Jones R. Synthesis of -6-alkylated deoxyguanosine nucleosides Tetrahedron Letters. 23: 2253-2256. DOI: 10.1016/S0040-4039(00)87314-1 |
0.352 |
|
| 1977 |
Robins MJ, Jones RA, Mengel R. Nucleic acid related compounds. 24. Transformation of tubercidin 2′,3′-O-orthoacetate into halo, deoxy, epoxide, and unsaturated sugar nucleosides Canadian Journal of Chemistry. 55: 1251-1259. DOI: 10.1002/Chin.197727342 |
0.535 |
|
| 1977 |
ROBINS MJ, JONES RA, MENGEL R. ChemInform Abstract: NUCLEIC ACID RELATED COMPOUNDS. 24. TRANSFORMATION OF TUBERCIDIN 2′,3′-O-ORTHOACETATE INTO HALO, DEOXY, EPOXIDE, AND UNSATURATED SUGAR NUCLEOSIDES Chemischer Informationsdienst. 8: no-no. DOI: 10.1002/chin.197727342 |
0.457 |
|
| 1976 |
Robins MJ, Jones RA, Mengel R. Nucleic acid related compounds. 23. Transformation of ribonucleoside 2',3'-O-ortho esters into unsaturated and deoxy sugar nucleosides via enol ester-substituted iodo intermediates. Journal of the American Chemical Society. 98: 8213-7. PMID 993520 DOI: 10.1002/Chin.197711363 |
0.516 |
|
| 1976 |
Robins MJ, Mengel R, Jones RA, Fouron Y. Nucleic acid related compounds.22. Transformation of ribonucleoside 2,3'-O-ortho esters into halo, deoxy, and epoxy sugar nucleosides using acyl halides. Mechanism and structure of products. Journal of the American Chemical Society. 98: 8204-13. PMID 993519 DOI: 10.1002/Chin.197710371 |
0.51 |
|
| 1974 |
Robins MJ, Jones RA, MacCoss M. 3'-O-aminoacyl-2'-deoxyadenosines and 2'-O-aminoacyl-3'-deoxyadenosines related to charged transfer ribonucleic acid termini. Biochemistry. 13: 553-9. PMID 4543925 DOI: 10.1021/Bi00700A023 |
0.472 |
|
| 1974 |
Robins MJ, Jones RA. Nucleic acid related compounds. 9. Synthesis of 6-amino-9-(2-deoxy-D-erythro-pent-1-enofuranosyl)purine, the first 1', 2'-unsaturated purine nucleoside The Journal of Organic Chemistry. 39: 113-115. DOI: 10.1021/Jo00915A031 |
0.513 |
|
| 1974 |
ROBINS MJ, JONES RA. ChemInform Abstract: NUCLEID ACID RELATED COMPOUNDS PART 9, THE SYNTHESIS OF 6-AMINO-9-(2-DEOXY-D-ERYTHRO-PENT-1-ENOFURANOSYL)-PURINE, THE FIRST 1′,2′-UNSATURATED PURINE NUCLEOSIDE Chemischer Informationsdienst. 5: no-no. DOI: 10.1002/chin.197415485 |
0.464 |
|
| 1973 |
Robins MJ, McCarthy Jr. JR, Jones RA, Mengel R. Nucleic Acid Related Compounds. 5. The Transformation of Formycin and Tubercidin into 2′- and 3′-Deoxynucleosides Canadian Journal of Chemistry. 51: 1313-1321. DOI: 10.1139/V73-198 |
0.518 |
|
| 1973 |
ROBINS MJ, MENGEL R, JONES RA. ChemInform Abstract: NUCLEIC ACID RELATED COMPOUNDS PART 7, CONVERSION OF RIBONUCLEOSIDE 2′,3′-ORTHO ESTERS INTO DEOXY, EPOXY, AND UNSATURED NUCLEOSIDES Chemischer Informationsdienst. 4: no-no. DOI: 10.1002/chin.197333433 |
0.447 |
|
| 1973 |
ROBINS MJ, MCCARTHY JR, JONES RA, MENGEL R. ChemInform Abstract: NUCLEINSAEURE-VERWANDTE VERBINDUNGEN 5. MITT. UMWANDLUNG VON FORMYCIN UND TUBERCIDIN IN 2′- UND 3′-DESOXYNUCLEOSIDE Chemischer Informationsdienst. 4: no-no. DOI: 10.1002/Chin.197328453 |
0.47 |
|
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