| Year |
Citation |
Score |
| 2024 |
Wu M, Li J, Lai CY, Leu AO, Sun S, Gu R, Erler DV, Liu L, Li L, Tyson GW, Yuan Z, McIlroy SJ, Guo J. Nitrate-driven anaerobic oxidation of ethane and butane by bacteria. The Isme Journal. 18. PMID 38365228 DOI: 10.1093/ismejo/wrad011 |
0.788 |
|
| 2023 |
Ellenbogen JB, Borton MA, McGivern BB, Cronin DR, Hoyt DW, Freire-Zapata V, McCalley CK, Varner RK, Crill PM, Wehr RA, Chanton JP, Woodcroft BJ, Tfaily MM, Tyson GW, Rich VI, et al. Methylotrophy in the Mire: direct and indirect routes for methane production in thawing permafrost. Msystems. e0069823. PMID 38063415 DOI: 10.1128/msystems.00698-23 |
0.688 |
|
| 2023 |
Zhang X, Joyce GH, Leu AO, Zhao J, Rabiee H, Virdis B, Tyson GW, Yuan Z, McIlroy SJ, Hu S. Multi-heme cytochrome-mediated extracellular electron transfer by the anaerobic methanotroph 'Candidatus Methanoperedens nitroreducens'. Nature Communications. 14: 6118. PMID 37777538 DOI: 10.1038/s41467-023-41847-w |
0.764 |
|
| 2023 |
Li J, Liu T, McIlroy SJ, Tyson GW, Guo J. Phylogenetic and metabolic diversity of microbial communities performing anaerobic ammonium and methane oxidations under different nitrogen loadings. Isme Communications. 3: 39. PMID 37185621 DOI: 10.1038/s43705-023-00246-4 |
0.333 |
|
| 2023 |
McIlroy SJ, Leu AO, Zhang X, Newell R, Woodcroft BJ, Yuan Z, Hu S, Tyson GW. Anaerobic methanotroph 'Candidatus Methanoperedens nitroreducens' has a pleomorphic life cycle. Nature Microbiology. PMID 36635574 DOI: 10.1038/s41564-022-01292-9 |
0.767 |
|
| 2022 |
Wu M, Li J, Leu AO, Erler DV, Stark T, Tyson GW, Yuan Z, McIlroy SJ, Guo J. Anaerobic oxidation of propane coupled to nitrate reduction by a lineage within the class Symbiobacteriia. Nature Communications. 13: 6115. PMID 36253480 DOI: 10.1038/s41467-022-33872-y |
0.79 |
|
| 2022 |
Ou YF, Dong HP, McIlroy SJ, Crowe SA, Hallam SJ, Han P, Kallmeyer J, Simister RL, Vuillemin A, Leu AO, Liu Z, Zheng YL, Sun QL, Liu M, Tyson GW, et al. Expanding the phylogenetic distribution of cytochrome b-containing methanogenic archaea sheds light on the evolution of methanogenesis. The Isme Journal. PMID 35810262 DOI: 10.1038/s41396-022-01281-0 |
0.789 |
|
| 2022 |
Chadwick GL, Skennerton CT, Laso-Pérez R, Leu AO, Speth DR, Yu H, Morgan-Lang C, Hatzenpichler R, Goudeau D, Malmstrom R, Brazelton WJ, Woyke T, Hallam SJ, Tyson GW, Wegener G, et al. Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea. Plos Biology. 20: e3001508. PMID 34986141 DOI: 10.1371/journal.pbio.3001508 |
0.808 |
|
| 2021 |
Emerson JB, Varner RK, Wik M, Parks DH, Neumann RB, Johnson JE, Singleton CM, Woodcroft BJ, Tollerson R, Owusu-Dommey A, Binder M, Freitas NL, Crill PM, Saleska SR, Tyson GW, et al. Diverse sediment microbiota shape methane emission temperature sensitivity in Arctic lakes. Nature Communications. 12: 5815. PMID 34611153 DOI: 10.1038/s41467-021-25983-9 |
0.651 |
|
| 2021 |
Yu H, Skennerton CT, Chadwick GL, Leu AO, Aoki M, Tyson GW, Orphan VJ. Sulfate differentially stimulates but is not respired by diverse anaerobic methanotrophic archaea. The Isme Journal. PMID 34285362 DOI: 10.1038/s41396-021-01047-0 |
0.778 |
|
| 2021 |
Shi LD, Lv PL, McIlroy SJ, Wang Z, Dong XL, Kouris A, Lai CY, Tyson GW, Strous M, Zhao HP. Methane-dependent selenate reduction by a bacterial consortium. The Isme Journal. PMID 34183781 DOI: 10.1038/s41396-021-01044-3 |
0.332 |
|
| 2021 |
Parks DH, Rigato F, Vera-Wolf P, Krause L, Hugenholtz P, Tyson GW, Wood DLA. Evaluation of the Microba Community Profiler for Taxonomic Profiling of Metagenomic Datasets From the Human Gut Microbiome. Frontiers in Microbiology. 12: 643682. PMID 33959106 DOI: 10.3389/fmicb.2021.643682 |
0.302 |
|
| 2020 |
Zinke LA, Evans PN, Santos-Medellín C, Schroeder AL, Parks DH, Varner RK, Rich VI, Tyson GW, Emerson JB. Evidence for non-methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales. Environmental Microbiology. PMID 33185945 DOI: 10.1111/1462-2920.15316 |
0.723 |
|
| 2020 |
Leu AO, McIlroy SJ, Ye J, Parks DH, Orphan VJ, Tyson GW. Lateral Gene Transfer Drives Metabolic Flexibility in the Anaerobic Methane-Oxidizing Archaeal Family . Mbio. 11. PMID 32605988 DOI: 10.1128/Mbio.01325-20 |
0.812 |
|
| 2020 |
Leu AO, Cai C, McIlroy SJ, Southam G, Orphan VJ, Yuan Z, Hu S, Tyson GW. Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae. The Isme Journal. PMID 31988473 DOI: 10.1038/S41396-020-0590-X |
0.801 |
|
| 2020 |
Bolduc B, Hodgkins SB, Varner RK, Crill PM, McCalley CK, Chanton JP, Tyson GW, Riley WJ, Palace M, Duhaime MB, Hough MA, Saleska SR, Sullivan MB, Rich VI. The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research Peerj. 8. DOI: 10.7717/Peerj.9467 |
0.672 |
|
| 2019 |
Gagen EJ, Zaugg J, Tyson GW, Southam G. Goethite Reduction by a Neutrophilic Member of the Alphaproteobacterial Genus . Frontiers in Microbiology. 10: 2938. PMID 31921089 DOI: 10.3389/Fmicb.2019.02938 |
0.311 |
|
| 2019 |
Hua ZS, Wang YL, Evans PN, Qu YN, Goh KM, Rao YZ, Qi YL, Li YX, Huang MJ, Jiao JY, Chen YT, Mao YP, Shu WS, Hozzein W, Hedlund BP, ... Tyson GW, et al. Insights into the ecological roles and evolution of methyl-coenzyme M reductase-containing hot spring Archaea. Nature Communications. 10: 4574. PMID 31594929 DOI: 10.1038/S41467-019-12574-Y |
0.461 |
|
| 2019 |
Robbins SJ, Singleton CM, Chan CX, Messer LF, Geers AU, Ying H, Baker A, Bell SC, Morrow KM, Ragan MA, Miller DJ, Forêt S, Voolstra CR, Tyson GW, et al. A genomic view of the reef-building coral Porites lutea and its microbial symbionts. Nature Microbiology. PMID 31548681 DOI: 10.1038/S41564-019-0532-4 |
0.474 |
|
| 2019 |
Cai C, Shi Y, Guo J, Tyson GW, Hu S, Yuan Z. Acetate Production from Anaerobic Oxidation of Methane via Intracellular Storage Compounds. Environmental Science & Technology. PMID 31244078 DOI: 10.1021/Acs.Est.9B00077 |
0.34 |
|
| 2019 |
Zhang X, Xia J, Pu J, Cai C, Tyson GW, Yuan Z, Hu S. Biochar-mediated Anaerobic Oxidation of Methane. Environmental Science & Technology. PMID 31099557 DOI: 10.1021/Acs.Est.9B01345 |
0.377 |
|
| 2019 |
Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, ... ... Tyson GW, et al. Consent insufficient for data release-Response. Science (New York, N.Y.). 364: 446. PMID 31048484 DOI: 10.1126/Science.Aax7509 |
0.631 |
|
| 2019 |
Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, ... ... Tyson GW, et al. Toward unrestricted use of public genomic data. Science (New York, N.Y.). 363: 350-352. PMID 30679363 DOI: 10.1126/Science.Aaw1280 |
0.627 |
|
| 2019 |
Evans PN, Boyd JA, Leu AO, Woodcroft BJ, Parks DH, Hugenholtz P, Tyson GW. An evolving view of methane metabolism in the Archaea. Nature Reviews. Microbiology. PMID 30664670 DOI: 10.1038/S41579-018-0136-7 |
0.785 |
|
| 2019 |
Boyd JA, Jungbluth SP, Leu AO, Evans PN, Woodcroft BJ, Chadwick GL, Orphan VJ, Amend JP, Rappé MS, Tyson GW. Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi. The Isme Journal. PMID 30651609 DOI: 10.1038/S41396-018-0343-2 |
0.786 |
|
| 2019 |
Wilson RM, Neumann RB, Crossen KB, Raab NM, Hodgkins SB, Saleska SR, Bolduc B, Woodcroft BJ, Tyson GW, Chanton JP, Rich VI. Microbial Community Analyses Inform Geochemical Reaction Network Models for Predicting Pathways of Greenhouse Gas Production Frontiers in Earth Science. 7. DOI: 10.3389/Feart.2019.00059 |
0.702 |
|
| 2019 |
Luangthongkam P, Strong PJ, Syed Mahamud SN, Evans P, Jensen P, Tyson G, Laycock B, Lant PA, Pratt S. The effect of methane and odd-chain fatty acids on 3-hydroxybutyrate (3HB) and 3-hydroxyvalerate (3HV) synthesis by a Methylosinus-dominated mixed culture Bioresources and Bioprocessing. 6. DOI: 10.1186/S40643-019-0285-1 |
0.303 |
|
| 2018 |
Martinez MA, Woodcroft BJ, Ignacio Espinoza JC, Zayed AA, Singleton CM, Boyd JA, Li YF, Purvine S, Maughan H, Hodgkins SB, Anderson D, Sederholm M, Temperton B, Bolduc B, Saleska SR, ... Tyson GW, ... ... Tyson GW, et al. Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov. Systematic and Applied Microbiology. PMID 30616913 DOI: 10.1016/J.Syapm.2018.12.003 |
0.692 |
|
| 2018 |
Rinke C, Rubino F, Messer LF, Youssef N, Parks DH, Chuvochina M, Brown M, Jeffries T, Tyson GW, Seymour JR, Hugenholtz P. A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.). The Isme Journal. PMID 30323263 DOI: 10.1038/S41396-018-0282-Y |
0.435 |
|
| 2018 |
Trubl G, Jang HB, Roux S, Emerson JB, Solonenko N, Vik DR, Solden L, Ellenbogen J, Runyon AT, Bolduc B, Woodcroft BJ, Saleska SR, Tyson GW, Wrighton KC, Sullivan MB, et al. Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing. Msystems. 3. PMID 30320215 DOI: 10.1128/mSystems.00076-18 |
0.674 |
|
| 2018 |
Chuvochina M, Rinke C, Parks DH, Rappé MS, Tyson GW, Yilmaz P, Whitman WB, Hugenholtz P. The importance of designating type material for uncultured taxa. Systematic and Applied Microbiology. PMID 30098831 DOI: 10.1016/J.Syapm.2018.07.003 |
0.336 |
|
| 2018 |
Hoedt EC, Parks DH, Volmer JG, Rosewarne CP, Denman SE, McSweeney CS, Muir JG, Gibson PR, Cuív PÓ, Hugenholtz P, Tyson GW, Morrison M. Culture- and metagenomics-enabled analyses of the Methanosphaera genus reveals their monophyletic origin and differentiation according to genome size. The Isme Journal. PMID 30068938 DOI: 10.1038/S41396-018-0225-7 |
0.407 |
|
| 2018 |
Emerson JB, Roux S, Brum JR, Bolduc B, Woodcroft BJ, Jang HB, Singleton CM, Solden LM, Naas AE, Boyd JA, Hodgkins SB, Wilson RM, Trubl G, Li C, Frolking S, ... ... Tyson GW, et al. Host-linked soil viral ecology along a permafrost thaw gradient. Nature Microbiology. PMID 30013236 DOI: 10.1038/S41564-018-0190-Y |
0.71 |
|
| 2018 |
Woodcroft BJ, Singleton CM, Boyd JA, Evans PN, Emerson JB, Zayed AAF, Hoelzle RD, Lamberton TO, McCalley CK, Hodgkins SB, Wilson RM, Purvine SO, Nicora CD, Li C, Frolking S, ... ... Tyson GW, et al. Genome-centric view of carbon processing in thawing permafrost. Nature. PMID 30013118 DOI: 10.1038/S41586-018-0338-1 |
0.757 |
|
| 2018 |
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Tyson GW, et al. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 36: 660. PMID 29979671 DOI: 10.1038/Nbt0718-660A |
0.703 |
|
| 2018 |
Singleton CM, McCalley CK, Woodcroft BJ, Boyd JA, Evans PN, Hodgkins SB, Chanton JP, Frolking S, Crill PM, Saleska SR, Rich VI, Tyson GW. Methanotrophy across a natural permafrost thaw environment. The Isme Journal. PMID 29955139 DOI: 10.1038/S41396-018-0065-5 |
0.738 |
|
| 2018 |
Cai C, Leu AO, Xie GJ, Guo J, Feng Y, Zhao JX, Tyson GW, Yuan Z, Hu S. A methanotrophic archaeon couples anaerobic oxidation of methane to Fe(III) reduction. The Isme Journal. PMID 29662147 DOI: 10.1038/S41396-018-0109-X |
0.763 |
|
| 2018 |
Boyd JA, Woodcroft BJ, Tyson GW. GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes. Nucleic Acids Research. PMID 29562347 DOI: 10.1093/Nar/Gky174 |
0.446 |
|
| 2018 |
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Tyson GW, et al. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 36: 196. PMID 29406516 DOI: 10.1038/Nbt0218-196A |
0.726 |
|
| 2018 |
Raudsepp MJ, Fluggen M, Shypanski AH, Tyson GW, Golding SD, Southam G. Biogenic Methane Cycling in a Laboratory Model of an Abandoned Bituminous Coal Mine Geomicrobiology Journal. 35: 491-502. DOI: 10.1080/01490451.2017.1392652 |
0.316 |
|
| 2017 |
Parks DH, Rinke C, Chuvochina M, Chaumeil PA, Woodcroft BJ, Evans PN, Hugenholtz P, Tyson GW. Author Correction: Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life. Nature Microbiology. PMID 29234139 DOI: 10.1038/S41564-017-0083-5 |
0.404 |
|
| 2017 |
Shiffman ME, Soo RM, Dennis PG, Morrison M, Tyson GW, Hugenholtz P. Gene and genome-centric analyses of koala and wombat fecal microbiomes point to metabolic specialization for Eucalyptus digestion. Peerj. 5: e4075. PMID 29177117 DOI: 10.7717/Peerj.4075 |
0.445 |
|
| 2017 |
Skennerton CT, Chourey K, Iyer R, Hettich RL, Tyson GW, Orphan VJ. Erratum for Skennerton et al., "Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea". Mbio. 8. PMID 28974619 DOI: 10.1128/Mbio.01561-17 |
0.604 |
|
| 2017 |
Cayford BI, Jiang G, Keller J, Tyson G, Bond PL. Comparison of microbial communities across sections of a corroding sewer pipe and the effects of wastewater flooding. Biofouling. 1-13. PMID 28956470 DOI: 10.1080/08927014.2017.1369050 |
0.336 |
|
| 2017 |
Parks DH, Rinke C, Chuvochina M, Chaumeil PA, Woodcroft BJ, Evans PN, Hugenholtz P, Tyson GW. Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life. Nature Microbiology. PMID 28894102 DOI: 10.1038/S41564-017-0012-7 |
0.436 |
|
| 2017 |
Tout J, Astudillo-García C, Taylor MW, Tyson GW, Stocker R, Ralph PJ, Seymour JR, Webster NS. Redefining the sponge-symbiont acquisition paradigm: Sponge microbes exhibit chemotaxis towards host-derived compounds. Environmental Microbiology Reports. PMID 28892304 DOI: 10.1111/1758-2229.12591 |
0.36 |
|
| 2017 |
Lambert BS, Raina JB, Fernandez VI, Rinke C, Siboni N, Rubino F, Hugenholtz P, Tyson GW, Seymour JR, Stocker R. A microfluidics-based in situ chemotaxis assay to study the behaviour of aquatic microbial communities. Nature Microbiology. PMID 28848238 DOI: 10.1038/S41564-017-0010-9 |
0.305 |
|
| 2017 |
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Tyson GW, et al. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 35: 725-731. PMID 28787424 DOI: 10.1038/Nbt.3893 |
0.735 |
|
| 2017 |
Skennerton CT, Chourey K, Iyer R, Hettich RL, Tyson GW, Orphan VJ. Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea. Mbio. 8. PMID 28765215 DOI: 10.1128/Mbio.00530-17 |
0.663 |
|
| 2017 |
Pedroso MM, Selleck C, Enculescu C, Harmer JR, Mitić N, Craig WR, Helweh W, Hugenholtz P, Tyson GW, Tierney DL, Larrabee JA, Schenk G. Characterization of a highly efficient antibiotic-degrading metallo-β-lactamase obtained from an uncultured member of a permafrost community. Metallomics : Integrated Biometal Science. PMID 28749495 DOI: 10.1039/C7Mt00195A |
0.301 |
|
| 2017 |
Raudsepp MJ, Gagen EJ, Golding SD, Tyson GW, Southam G. The effect of bituminous coal on methanogenic mixed cultures and pure cultures of Methanococcus and Methanosarcina Fuel. 205: 60-70. DOI: 10.1016/J.Fuel.2017.05.059 |
0.304 |
|
| 2017 |
Deng J, McCalley CK, Frolking S, Chanton J, Crill P, Varner R, Tyson G, Rich V, Hines M, Saleska SR, Li C. Adding stable carbon isotopes improves model representation of the role of microbial communities in peatland methane cycling Journal of Advances in Modeling Earth Systems. 9: 1412-1430. DOI: 10.1002/2016Ms000817 |
0.674 |
|
| 2016 |
Dennis PG, Virdis B, Vanwonterghem I, Hassan A, Hugenholtz P, Tyson GW, Rabaey K. Anode potential influences the structure and function of anodic electrode and electrolyte-associated microbiomes. Scientific Reports. 6: 39114. PMID 27991591 DOI: 10.1038/Srep39114 |
0.347 |
|
| 2016 |
Vanwonterghem I, Evans PN, Parks DH, Jensen PD, Woodcroft BJ, Hugenholtz P, Tyson GW. Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota. Nature Microbiology. 1: 16170. PMID 27694807 DOI: 10.1038/Nmicrobiol.2016.170 |
0.459 |
|
| 2016 |
Rinke C, Low S, Woodcroft BJ, Raina JB, Skarshewski A, Le XH, Butler MK, Stocker R, Seymour J, Tyson GW, Hugenholtz P. Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics. Peerj. 4: e2486. PMID 27688978 DOI: 10.7717/Peerj.2486 |
0.334 |
|
| 2016 |
Robbins SJ, Evans PN, Parks DH, Golding SD, Tyson GW. Genome-Centric Analysis of Microbial Populations Enriched by Hydraulic Fracture Fluid Additives in a Coal Bed Methane Production Well. Frontiers in Microbiology. 7: 731. PMID 27375557 DOI: 10.3389/Fmicb.2016.00731 |
0.304 |
|
| 2016 |
Vanwonterghem I, Jensen PD, Rabaey K, Tyson GW. Genome-centric resolution of microbial diversity, metabolism and interactions in anaerobic digestion. Environmental Microbiology. PMID 27317862 DOI: 10.1111/1462-2920.13382 |
0.476 |
|
| 2016 |
Woodcroft BJ, Boyd JA, Tyson GW. OrfM: A fast open reading frame predictor for metagenomic data. Bioinformatics (Oxford, England). PMID 27153669 DOI: 10.1093/Bioinformatics/Btw241 |
0.308 |
|
| 2016 |
Skennerton CT, Haroon MF, Briegel A, Shi J, Jensen GJ, Tyson GW, Orphan VJ. Phylogenomic analysis of Candidatus 'Izimaplasma' species: free-living representatives from a Tenericutes clade found in methane seeps. The Isme Journal. PMID 27058507 DOI: 10.1038/Ismej.2016.55 |
0.665 |
|
| 2016 |
Angly FE, Pantos O, Morgan TC, Rich V, Tonin H, Bourne DG, Mercurio P, Negri AP, Tyson GW. Diuron tolerance and potential degradation by pelagic microbiomes in the Great Barrier Reef lagoon. Peerj. 4: e1758. PMID 26989611 DOI: 10.7717/Peerj.1758 |
0.712 |
|
| 2016 |
Angly FE, Heath C, Morgan TC, Tonin H, Rich V, Schaffelke B, Bourne DG, Tyson GW. Marine microbial communities of the Great Barrier Reef lagoon are influenced by riverine floodwaters and seasonal weather events. Peerj. 4: e1511. PMID 26839738 DOI: 10.7717/Peerj.1511 |
0.702 |
|
| 2016 |
Robbins SJ, Evans PN, Esterle JS, Golding SD, Tyson GW. The effect of coal rank on biogenic methane potential and microbial composition International Journal of Coal Geology. 154: 205-212. DOI: 10.1016/J.Coal.2016.01.001 |
0.348 |
|
| 2015 |
Abdul Rahman N, Parks DH, Vanwonterghem I, Morrison M, Tyson GW, Hugenholtz P. A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres. Frontiers in Microbiology. 6: 1469. PMID 26779135 DOI: 10.3389/Fmicb.2015.01469 |
0.443 |
|
| 2015 |
Kao-Kniffin J, Woodcroft BJ, Carver SM, Bockheim JG, Handelsman J, Tyson GW, Hinkel KM, Mueller CW. Archaeal and bacterial communities across a chronosequence of drained lake basins in arctic alaska. Scientific Reports. 5: 18165. PMID 26681584 DOI: 10.1038/Srep18165 |
0.395 |
|
| 2015 |
Raudsepp MJ, Gagen EJ, Evans P, Tyson GW, Golding SD, Southam G. The influence of hydrogeological disturbance and mining on coal seam microbial communities. Geobiology. PMID 26541089 DOI: 10.1111/Gbi.12166 |
0.387 |
|
| 2015 |
Evans PN, Parks DH, Chadwick GL, Robbins SJ, Orphan VJ, Golding SD, Tyson GW. Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics. Science (New York, N.Y.). 350: 434-8. PMID 26494757 DOI: 10.1126/Science.Aac7745 |
0.674 |
|
| 2015 |
Barr JJ, Dutilh BE, Skennerton CT, Fukushima T, Hastie ML, Gorman JJ, Tyson GW, Bond PL. Metagenomic and metaproteomic analyses of Accumulibacter phosphatis-enriched floccular and granular biofilm. Environmental Microbiology. PMID 26279094 DOI: 10.1111/1462-2920.13019 |
0.363 |
|
| 2015 |
Patil SA, Arends JB, Vanwonterghem I, van Meerbergen J, Guo K, Tyson GW, Rabaey K. Selective Enrichment Establishes a Stable Performing Community for Microbial Electrosynthesis of Acetate from CO2. Environmental Science & Technology. 49: 8833-43. PMID 26079858 DOI: 10.1021/Es506149D |
0.337 |
|
| 2015 |
Soo RM, Woodcroft BJ, Parks DH, Tyson GW, Hugenholtz P. Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus. Peerj. 3: e968. PMID 26038723 DOI: 10.7717/Peerj.968 |
0.395 |
|
| 2015 |
Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Research. 25: 1043-55. PMID 25977477 DOI: 10.1101/Gr.186072.114 |
0.426 |
|
| 2015 |
Hu S, Zeng RJ, Haroon MF, Keller J, Lant PA, Tyson GW, Yuan Z. A laboratory investigation of interactions between denitrifying anaerobic methane oxidation (DAMO) and anammox processes in anoxic environments. Scientific Reports. 5: 8706. PMID 25732131 DOI: 10.1038/Srep08706 |
0.376 |
|
| 2015 |
Vanwonterghem I, Jensen PD, Rabaey K, Tyson GW. Temperature and solids retention time control microbial population dynamics and volatile fatty acid production in replicated anaerobic digesters. Scientific Reports. 5: 8496. PMID 25683239 DOI: 10.1038/Srep08496 |
0.315 |
|
| 2015 |
Pantos O, Bongaerts P, Dennis PG, Tyson GW, Hoegh-Guldberg O. Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix. The Isme Journal. 9: 1916-27. PMID 25668159 DOI: 10.1038/Ismej.2015.3 |
0.383 |
|
| 2015 |
Sekiguchi Y, Ohashi A, Parks DH, Yamauchi T, Tyson GW, Hugenholtz P. First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking. Peerj. 3: e740. PMID 25650158 DOI: 10.7717/Peerj.740 |
0.43 |
|
| 2015 |
Tout J, Jeffries TC, Petrou K, Tyson GW, Webster NS, Garren M, Stocker R, Ralph PJ, Seymour JR. Chemotaxis by natural populations of coral reef bacteria. The Isme Journal. 9: 1764-77. PMID 25615440 DOI: 10.1038/Ismej.2014.261 |
0.364 |
|
| 2015 |
Waldor MK, Tyson G, Borenstein E, Ochman H, Moeller A, Finlay BB, Kong HH, Gordon JI, Nelson KE, Dabbagh K, Smith H. Where next for microbiome research? Plos Biology. 13: e1002050. PMID 25602283 DOI: 10.1371/Journal.Pbio.1002050 |
0.364 |
|
| 2015 |
Skennerton CT, Barr JJ, Slater FR, Bond PL, Tyson GW. Expanding our view of genomic diversity in Candidatus Accumulibacter clades. Environmental Microbiology. 17: 1574-85. PMID 25088527 DOI: 10.1111/1462-2920.12582 |
0.481 |
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| 2015 |
Voolstra CR, Miller DJ, Ragan MA, Hoffmann AA, Hoegh-Guldberg O, Bourne DG, Ball EE, Ying H, Forêt S, Takahashi S, Weynberg KD, Oppen MJHv, Morrow K, Chan CX, Rosic N, ... ... Tyson GW, et al. The ReFuGe 2020 Consortium—using “omics” approaches to explore the adaptability and resilience of coral holobionts to environmental change Frontiers in Marine Science. 2. DOI: 10.3389/Fmars.2015.00068 |
0.409 |
|
| 2015 |
Susilawati R, Evans PN, Esterle JS, Robbins SJ, Tyson GW, Golding SD, Mares TE. Temporal changes in microbial community composition during culture enrichment experiments with Indonesian coals International Journal of Coal Geology. 137: 66-76. DOI: 10.1016/J.Coal.2014.10.015 |
0.332 |
|
| 2014 |
McCalley CK, Woodcroft BJ, Hodgkins SB, Wehr RA, Kim EH, Mondav R, Crill PM, Chanton JP, Rich VI, Tyson GW, Saleska SR. Methane dynamics regulated by microbial community response to permafrost thaw. Nature. 514: 478-81. PMID 25341787 DOI: 10.1038/Nature13798 |
0.714 |
|
| 2014 |
Imelfort M, Parks D, Woodcroft BJ, Dennis P, Hugenholtz P, Tyson GW. GroopM: an automated tool for the recovery of population genomes from related metagenomes. Peerj. 2: e603. PMID 25289188 DOI: 10.7717/Peerj.603 |
0.378 |
|
| 2014 |
Vanwonterghem I, Jensen PD, Ho DP, Batstone DJ, Tyson GW. Linking microbial community structure, interactions and function in anaerobic digesters using new molecular techniques. Current Opinion in Biotechnology. 27: 55-64. PMID 24863897 DOI: 10.1016/J.Copbio.2013.11.004 |
0.348 |
|
| 2014 |
Vanwonterghem I, Jensen PD, Dennis PG, Hugenholtz P, Rabaey K, Tyson GW. Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters. The Isme Journal. 8: 2015-28. PMID 24739627 DOI: 10.1038/Ismej.2014.50 |
0.344 |
|
| 2014 |
Soo RM, Skennerton CT, Sekiguchi Y, Imelfort M, Paech SJ, Dennis PG, Steen JA, Parks DH, Tyson GW, Hugenholtz P. An expanded genomic representation of the phylum cyanobacteria. Genome Biology and Evolution. 6: 1031-45. PMID 24709563 DOI: 10.1093/Gbe/Evu073 |
0.434 |
|
| 2014 |
Angly FE, Dennis PG, Skarshewski A, Vanwonterghem I, Hugenholtz P, Tyson GW. CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction. Microbiome. 2: 11. PMID 24708850 DOI: 10.1186/2049-2618-2-11 |
0.373 |
|
| 2014 |
Angly FE, Fields CJ, Tyson GW. The Bio-Community Perl toolkit for microbial ecology. Bioinformatics (Oxford, England). 30: 1926-7. PMID 24618462 DOI: 10.1093/Bioinformatics/Btu130 |
0.333 |
|
| 2014 |
Mondav R, Woodcroft BJ, Kim EH, McCalley CK, Hodgkins SB, Crill PM, Chanton J, Hurst GB, VerBerkmoes NC, Saleska SR, Hugenholtz P, Rich VI, Tyson GW. Discovery of a novel methanogen prevalent in thawing permafrost. Nature Communications. 5: 3212. PMID 24526077 DOI: 10.1038/Ncomms4212 |
0.736 |
|
| 2014 |
Bragg L, Tyson GW. Metagenomics using next-generation sequencing. Methods in Molecular Biology (Clifton, N.J.). 1096: 183-201. PMID 24515370 DOI: 10.1007/978-1-62703-712-9_15 |
0.431 |
|
| 2013 |
Pervin HM, Dennis PG, Lim HJ, Tyson GW, Batstone DJ, Bond PL. Drivers of microbial community composition in mesophilic and thermophilic temperature-phased anaerobic digestion pre-treatment reactors. Water Research. 47: 7098-108. PMID 24216229 DOI: 10.1016/J.Watres.2013.07.053 |
0.357 |
|
| 2013 |
Haroon MF, Skennerton CT, Steen JA, Lachner N, Hugenholtz P, Tyson GW. In-solution fluorescence in situ hybridization and fluorescence-activated cell sorting for single cell and population genome recovery. Methods in Enzymology. 531: 3-19. PMID 24060113 DOI: 10.1016/B978-0-12-407863-5.00001-0 |
0.369 |
|
| 2013 |
Dove SG, Kline DI, Pantos O, Angly FE, Tyson GW, Hoegh-Guldberg O. Future reef decalcification under a business-as-usual CO2 emission scenario. Proceedings of the National Academy of Sciences of the United States of America. 110: 15342-7. PMID 24003127 DOI: 10.1073/Pnas.1302701110 |
0.314 |
|
| 2013 |
Haroon MF, Hu S, Shi Y, Imelfort M, Keller J, Hugenholtz P, Yuan Z, Tyson GW. Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage. Nature. 500: 567-70. PMID 23892779 DOI: 10.1038/Nature12375 |
0.388 |
|
| 2013 |
Albertsen M, Hugenholtz P, Skarshewski A, Nielsen KL, Tyson GW, Nielsen PH. Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nature Biotechnology. 31: 533-8. PMID 23707974 DOI: 10.1038/Nbt.2579 |
0.445 |
|
| 2013 |
Solonenko SA, Ignacio-Espinoza JC, Alberti A, Cruaud C, Hallam S, Konstantinidis K, Tyson G, Wincker P, Sullivan MB. Sequencing platform and library preparation choices impact viral metagenomes. Bmc Genomics. 14: 320. PMID 23663384 DOI: 10.1186/1471-2164-14-320 |
0.681 |
|
| 2013 |
Dennis PG, Harnisch F, Yeoh YK, Tyson GW, Rabaey K. Dynamics of cathode-associated microbial communities and metabolite profiles in a glycerol-fed bioelectrochemical system. Applied and Environmental Microbiology. 79: 4008-14. PMID 23603684 DOI: 10.1128/Aem.00569-13 |
0.361 |
|
| 2013 |
Dennis PG, Seymour J, Kumbun K, Tyson GW. Diverse populations of lake water bacteria exhibit chemotaxis towards inorganic nutrients. The Isme Journal. 7: 1661-4. PMID 23514780 DOI: 10.1038/Ismej.2013.47 |
0.337 |
|
| 2013 |
Skennerton CT, Imelfort M, Tyson GW. Crass: identification and reconstruction of CRISPR from unassembled metagenomic data. Nucleic Acids Research. 41: e105. PMID 23511966 DOI: 10.1093/Nar/Gkt183 |
0.395 |
|
| 2013 |
Carvalhais LC, Dennis PG, Badri DV, Tyson GW, Vivanco JM, Schenk PM. Activation of the jasmonic acid plant defence pathway alters the composition of rhizosphere bacterial communities. Plos One. 8: e56457. PMID 23424661 DOI: 10.1371/Journal.Pone.0056457 |
0.331 |
|
| 2013 |
Dennis PG, Guo K, Imelfort M, Jensen P, Tyson GW, Rabaey K. Spatial uniformity of microbial diversity in a continuous bioelectrochemical system. Bioresource Technology. 129: 599-605. PMID 23313735 DOI: 10.1016/J.Biortech.2012.11.098 |
0.349 |
|
| 2013 |
Bourne DG, Dennis PG, Uthicke S, Soo RM, Tyson GW, Webster N. Coral reef invertebrate microbiomes correlate with the presence of photosymbionts. The Isme Journal. 7: 1452-8. PMID 23303372 DOI: 10.1038/Ismej.2012.172 |
0.421 |
|
| 2012 |
Carvalhais LC, Dennis PG, Tyson GW, Schenk PM. Application of metatranscriptomics to soil environments. Journal of Microbiological Methods. 91: 246-51. PMID 22963791 DOI: 10.1016/J.Mimet.2012.08.011 |
0.33 |
|
| 2012 |
Cayford BI, Dennis PG, Keller J, Tyson GW, Bond PL. High-throughput amplicon sequencing reveals distinct communities within a corroding concrete sewer system. Applied and Environmental Microbiology. 78: 7160-2. PMID 22843532 DOI: 10.1128/Aem.01582-12 |
0.374 |
|
| 2012 |
Angly FE, Willner D, Rohwer F, Hugenholtz P, Tyson GW. Grinder: a versatile amplicon and shotgun sequence simulator. Nucleic Acids Research. 40: e94. PMID 22434876 DOI: 10.1093/Nar/Gks251 |
0.374 |
|
| 2011 |
Skennerton CT, Angly FE, Breitbart M, Bragg L, He S, McMahon KD, Hugenholtz P, Tyson GW. Phage encoded H-NS: a potential achilles heel in the bacterial defence system. Plos One. 6: e20095. PMID 21625595 DOI: 10.1371/Journal.Pone.0020095 |
0.404 |
|
| 2011 |
Angly F, Tyson G. [Are divergent viral communities controlling individual gut microbiota?]. | Des communautés de phages divergentes contrôlent-elles la microflore intestinale ? MéDecine Sciences : M/S. 27: 229-231. PMID 21447285 DOI: 10.1051/Medsci/2011273229 |
0.308 |
|
| 2011 |
Shi Y, Tyson GW, Eppley JM, DeLong EF. Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean. The Isme Journal. 5: 999-1013. PMID 21151004 DOI: 10.1038/Ismej.2010.189 |
0.765 |
|
| 2010 |
Yilmaz S, Haroon MF, Rabkin BA, Tyson GW, Hugenholtz P. Fixation-free fluorescence in situ hybridization for targeted enrichment of microbial populations. The Isme Journal. 4: 1352-6. PMID 20505753 DOI: 10.1038/Ismej.2010.73 |
0.31 |
|
| 2010 |
Martinez A, Tyson GW, Delong EF. Widespread known and novel phosphonate utilization pathways in marine bacteria revealed by functional screening and metagenomic analyses. Environmental Microbiology. 12: 222-38. PMID 19788654 DOI: 10.1111/J.1462-2920.2009.02062.X |
0.576 |
|
| 2009 |
Shi Y, Tyson GW, DeLong EF. Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column. Nature. 459: 266-9. PMID 19444216 DOI: 10.1038/Nature08055 |
0.758 |
|
| 2009 |
Baker BJ, Tyson GW, Goosherst L, Banfield JF. Insights into the diversity of eukaryotes in acid mine drainage biofilm communities. Applied and Environmental Microbiology. 75: 2192-9. PMID 19201960 DOI: 10.1128/Aem.02500-08 |
0.589 |
|
| 2008 |
Frias-Lopez J, Shi Y, Tyson GW, Coleman ML, Schuster SC, Chisholm SW, Delong EF. Microbial community gene expression in ocean surface waters. Proceedings of the National Academy of Sciences of the United States of America. 105: 3805-10. PMID 18316740 DOI: 10.1073/Pnas.0708897105 |
0.748 |
|
| 2008 |
Tyson GW, Banfield JF. Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses. Environmental Microbiology. 10: 200-7. PMID 17894817 DOI: 10.1111/J.1462-2920.2007.01444.X |
0.574 |
|
| 2007 |
Eppley JM, Tyson GW, Getz WM, Banfield JF. Strainer: software for analysis of population variation in community genomic datasets. Bmc Bioinformatics. 8: 398. PMID 17941997 DOI: 10.1186/1471-2105-8-398 |
0.565 |
|
| 2007 |
Eppley JM, Tyson GW, Getz WM, Banfield JF. Genetic exchange across a species boundary in the archaeal genus ferroplasma. Genetics. 177: 407-16. PMID 17603112 DOI: 10.1534/Genetics.107.072892 |
0.511 |
|
| 2007 |
Lo I, Denef VJ, Verberkmoes NC, Shah MB, Goltsman D, DiBartolo G, Tyson GW, Allen EE, Ram RJ, Detter JC, Richardson P, Thelen MP, Hettich RL, Banfield JF. Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria. Nature. 446: 537-41. PMID 17344860 DOI: 10.1038/Nature05624 |
0.801 |
|
| 2007 |
Allen EE, Tyson GW, Whitaker RJ, Detter JC, Richardson PM, Banfield JF. Genome dynamics in a natural archaeal population. Proceedings of the National Academy of Sciences of the United States of America. 104: 1883-8. PMID 17267615 DOI: 10.1073/Pnas.0604851104 |
0.576 |
|
| 2006 |
Baker BJ, Tyson GW, Webb RI, Flanagan J, Hugenholtz P, Allen EE, Banfield JF. Lineages of acidophilic archaea revealed by community genomic analysis. Science (New York, N.Y.). 314: 1933-5. PMID 17185602 DOI: 10.1126/Science.1132690 |
0.571 |
|
| 2005 |
Tyson GW, Lo I, Baker BJ, Allen EE, Hugenholtz P, Banfield JF. Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community. Applied and Environmental Microbiology. 71: 6319-24. PMID 16204553 DOI: 10.1128/Aem.71.10.6319-6324.2005 |
0.58 |
|
| 2005 |
Tyson GW, Banfield JF. Cultivating the uncultivated: a community genomics perspective. Trends in Microbiology. 13: 411-5. PMID 16043355 DOI: 10.1016/J.Tim.2005.07.003 |
0.612 |
|
| 2005 |
Ram RJ, Verberkmoes NC, Thelen MP, Tyson GW, Baker BJ, Blake RC, Shah M, Hettich RL, Banfield JF. Community proteomics of a natural microbial biofilm. Science (New York, N.Y.). 308: 1915-20. PMID 15879173 DOI: 10.1126/Science. |
0.556 |
|
| 2005 |
Banfield JF, Tyson GW, Allen EE, Whitaker RJ. The search for a molecular-level understanding of the processes that underpin the Earth's biogeochemical cycles Reviews in Mineralogy and Geochemistry. 59: 1-7. DOI: 10.2138/Rmg.2005.59.1 |
0.591 |
|
| 2004 |
Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, Solovyev VV, Rubin EM, Rokhsar DS, Banfield JF. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature. 428: 37-43. PMID 14961025 DOI: 10.1038/Nature02340 |
0.608 |
|
| 2002 |
Björnsson L, Hugenholtz P, Tyson GW, Blackall LL. Filamentous Chloroflexi (green non-sulfur bacteria) are abundant in wastewater treatment processes with biological nutrient removal. Microbiology (Reading, England). 148: 2309-18. PMID 12177325 DOI: 10.1099/00221287-148-8-2309 |
0.337 |
|
| 2001 |
Hugenholtz P, Tyson GW, Webb RI, Wagner AM, Blackall LL. Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives. Applied and Environmental Microbiology. 67: 411-9. PMID 11133473 DOI: 10.1128/Aem.67.1.411-419.2001 |
0.355 |
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