Virginia Rich - Publications

Affiliations: 
2008 MIT-WHOI Joint Program 

25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Ellenbogen JB, Borton MA, McGivern BB, Cronin DR, Hoyt DW, Freire-Zapata V, McCalley CK, Varner RK, Crill PM, Wehr RA, Chanton JP, Woodcroft BJ, Tfaily MM, Tyson GW, Rich VI, et al. Methylotrophy in the Mire: direct and indirect routes for methane production in thawing permafrost. Msystems. e0069823. PMID 38063415 DOI: 10.1128/msystems.00698-23  0.587
2022 Ernakovich JG, Barbato RA, Rich VI, Schädel C, Hewitt RE, Doherty SJ, Whalen ED, Abbott BW, Barta J, Biasi C, Chabot CL, Hultman J, Knoblauch C, Vetter MCYL, Leewis MC, et al. Microbiome assembly in thawing permafrost and its feedbacks to climate. Global Change Biology. PMID 35722720 DOI: 10.1111/gcb.16231  0.38
2021 Emerson JB, Varner RK, Wik M, Parks DH, Neumann RB, Johnson JE, Singleton CM, Woodcroft BJ, Tollerson R, Owusu-Dommey A, Binder M, Freitas NL, Crill PM, Saleska SR, Tyson GW, ... Rich VI, et al. Diverse sediment microbiota shape methane emission temperature sensitivity in Arctic lakes. Nature Communications. 12: 5815. PMID 34611153 DOI: 10.1038/s41467-021-25983-9  0.545
2021 Roux S, Paul BG, Bagby SC, Nayfach S, Allen MA, Attwood G, Cavicchioli R, Chistoserdova L, Gruninger RJ, Hallam SJ, Hernandez ME, Hess M, Liu WT, McAllister TA, O'Malley MA, ... ... Rich VI, et al. Ecology and molecular targets of hypermutation in the global microbiome. Nature Communications. 12: 3076. PMID 34031405 DOI: 10.1038/s41467-021-23402-7  0.551
2021 Wilson RM, Zayed AA, Crossen KB, Woodcroft B, Tfaily MM, Emerson J, Raab N, Hodgkins SB, Verbeke B, Tyson G, Crill P, Saleska S, Chanton JP, Rich VI, et al. Functional capacities of microbial communities to carry out large scale geochemical processes are maintained during ex situ anaerobic incubation. Plos One. 16: e0245857. PMID 33630888 DOI: 10.1371/journal.pone.0245857  0.337
2020 Zinke LA, Evans PN, Santos-Medellín C, Schroeder AL, Parks DH, Varner RK, Rich VI, Tyson GW, Emerson JB. Evidence for non-methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales. Environmental Microbiology. PMID 33185945 DOI: 10.1111/1462-2920.15316  0.592
2020 Bolduc B, Hodgkins SB, Varner RK, Crill PM, McCalley CK, Chanton JP, Tyson GW, Riley WJ, Palace M, Duhaime MB, Hough MA, Saleska SR, Sullivan MB, Rich VI. The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research Peerj. 8. DOI: 10.7717/Peerj.9467  0.51
2019 Cavicchioli R, Ripple WJ, Timmis KN, Azam F, Bakken LR, Baylis M, Behrenfeld MJ, Boetius A, Boyd PW, Classen AT, Crowther TW, Danovaro R, Foreman CM, Huisman J, Hutchins DA, ... ... Rich VI, et al. Scientists' warning to humanity: microorganisms and climate change. Nature Reviews. Microbiology. PMID 31213707 DOI: 10.1038/S41579-019-0222-5  0.638
2019 Roux S, Trubl G, Goudeau D, Nath N, Couradeau E, Ahlgren NA, Zhan Y, Marsan D, Chen F, Fuhrman JA, Northen TR, Sullivan MB, Rich VI, Malmstrom RR, Eloe-Fadrosh EA. Optimizing genome assembly from PCR-amplified metagenomes. Peerj. 7: e6902. PMID 31119088 DOI: 10.7717/Peerj.6902  0.331
2019 Hutchins DA, Jansson JK, Remais JV, Rich VI, Singh BK, Trivedi P. Climate change microbiology - problems and perspectives. Nature Reviews. Microbiology. 17: 391-396. PMID 31092905 DOI: 10.1038/S41579-019-0178-5  0.318
2019 Wilson RM, Neumann RB, Crossen KB, Raab NM, Hodgkins SB, Saleska SR, Bolduc B, Woodcroft BJ, Tyson GW, Chanton JP, Rich VI. Microbial Community Analyses Inform Geochemical Reaction Network Models for Predicting Pathways of Greenhouse Gas Production Frontiers in Earth Science. 7. DOI: 10.3389/Feart.2019.00059  0.577
2018 Martinez MA, Woodcroft BJ, Ignacio Espinoza JC, Zayed AA, Singleton CM, Boyd JA, Li YF, Purvine S, Maughan H, Hodgkins SB, Anderson D, Sederholm M, Temperton B, Bolduc B, Saleska SR, ... ... Rich VI, ... ... Rich VI, et al. Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov. Systematic and Applied Microbiology. PMID 30616913 DOI: 10.1016/J.Syapm.2018.12.003  0.498
2018 Trubl G, Jang HB, Roux S, Emerson JB, Solonenko N, Vik DR, Solden L, Ellenbogen J, Runyon AT, Bolduc B, Woodcroft BJ, Saleska SR, Tyson GW, Wrighton KC, Sullivan MB, ... Rich VI, et al. Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing. Msystems. 3. PMID 30320215 DOI: 10.1128/mSystems.00076-18  0.568
2018 Emerson JB, Roux S, Brum JR, Bolduc B, Woodcroft BJ, Jang HB, Singleton CM, Solden LM, Naas AE, Boyd JA, Hodgkins SB, Wilson RM, Trubl G, Li C, Frolking S, ... ... Rich VI, et al. Host-linked soil viral ecology along a permafrost thaw gradient. Nature Microbiology. PMID 30013236 DOI: 10.1038/S41564-018-0190-Y  0.606
2018 Woodcroft BJ, Singleton CM, Boyd JA, Evans PN, Emerson JB, Zayed AAF, Hoelzle RD, Lamberton TO, McCalley CK, Hodgkins SB, Wilson RM, Purvine SO, Nicora CD, Li C, Frolking S, ... ... Rich VI, et al. Genome-centric view of carbon processing in thawing permafrost. Nature. PMID 30013118 DOI: 10.1038/S41586-018-0338-1  0.67
2018 Singleton CM, McCalley CK, Woodcroft BJ, Boyd JA, Evans PN, Hodgkins SB, Chanton JP, Frolking S, Crill PM, Saleska SR, Rich VI, Tyson GW. Methanotrophy across a natural permafrost thaw environment. The Isme Journal. PMID 29955139 DOI: 10.1038/S41396-018-0065-5  0.658
2017 Mondav R, McCalley CK, Hodgkins SB, Frolking S, Saleska SR, Rich VI, Chanton JP, Crill PM. Microbial network, phylogenetic diversity and community membership in the active layer across a permafrost thaw gradient. Environmental Microbiology. PMID 28574203 DOI: 10.1111/1462-2920.13809  0.324
2017 Deng J, McCalley CK, Frolking S, Chanton J, Crill P, Varner R, Tyson G, Rich V, Hines M, Saleska SR, Li C. Adding stable carbon isotopes improves model representation of the role of microbial communities in peatland methane cycling Journal of Advances in Modeling Earth Systems. 9: 1412-1430. DOI: 10.1002/2016Ms000817  0.532
2016 Angly FE, Pantos O, Morgan TC, Rich V, Tonin H, Bourne DG, Mercurio P, Negri AP, Tyson GW. Diuron tolerance and potential degradation by pelagic microbiomes in the Great Barrier Reef lagoon. Peerj. 4: e1758. PMID 26989611 DOI: 10.7717/Peerj.1758  0.588
2016 Angly FE, Heath C, Morgan TC, Tonin H, Rich V, Schaffelke B, Bourne DG, Tyson GW. Marine microbial communities of the Great Barrier Reef lagoon are influenced by riverine floodwaters and seasonal weather events. Peerj. 4: e1511. PMID 26839738 DOI: 10.7717/Peerj.1511  0.613
2014 McCalley CK, Woodcroft BJ, Hodgkins SB, Wehr RA, Kim EH, Mondav R, Crill PM, Chanton JP, Rich VI, Tyson GW, Saleska SR. Methane dynamics regulated by microbial community response to permafrost thaw. Nature. 514: 478-81. PMID 25341787 DOI: 10.1038/Nature13798  0.626
2014 Mondav R, Woodcroft BJ, Kim EH, McCalley CK, Hodgkins SB, Crill PM, Chanton J, Hurst GB, VerBerkmoes NC, Saleska SR, Hugenholtz P, Rich VI, Tyson GW. Discovery of a novel methanogen prevalent in thawing permafrost. Nature Communications. 5: 3212. PMID 24526077 DOI: 10.1038/Ncomms4212  0.637
2011 Rich VI, Pham VD, Eppley J, Shi Y, DeLong EF. Time-series analyses of Monterey Bay coastal microbial picoplankton using a 'genome proxy' microarray. Environmental Microbiology. 13: 116-34. PMID 20695878 DOI: 10.1111/J.1462-2920.2010.02314.X  0.723
2008 Rich VI, Konstantinidis K, DeLong EF. Design and testing of 'genome-proxy' microarrays to profile marine microbial communities. Environmental Microbiology. 10: 506-21. PMID 18028413 DOI: 10.1111/J.1462-2920.2007.01471.X  0.702
2006 DeLong EF, Preston CM, Mincer T, Rich V, Hallam SJ, Frigaard NU, Martinez A, Sullivan MB, Edwards R, Brito BR, Chisholm SW, Karl DM. Community genomics among stratified microbial assemblages in the ocean's interior. Science (New York, N.Y.). 311: 496-503. PMID 16439655 DOI: 10.1126/Science.1120250  0.662
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