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Christopher H. Wiggins - Publications

Affiliations: 
Applied Mathematics Columbia University, New York, NY 
Area:
machine learning, statistics, computational biology, applied mathematics, theoretical physics
Website:
http://www.columbia.edu/~chw2/
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Emmett KJ, Rosenstein JK, van de Meent JW, Shepard KL, Wiggins CH. Statistical inference for nanopore sequencing with a biased random walk model. Biophysical Journal. 108: 1852-5. PMID 25902425 DOI: 10.1016/J.Bpj.2015.03.013  0.301
2014 Johnson S, van de Meent JW, Phillips R, Wiggins CH, Lindén M. Multiple LacI-mediated loops revealed by Bayesian statistics and tethered particle motion. Nucleic Acids Research. 42: 10265-77. PMID 25120267 DOI: 10.1093/Nar/Gku563  0.322
2013 Mancini F, Wiggins CH, Marsili M, Walczak AM. Time-dependent information transmission in a model regulatory circuit. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 88: 022708. PMID 24032865 DOI: 10.1103/Physreve.88.022708  0.315
2013 Meent Jvd, Gonzalez RL, Wiggins CH. Learning Kinetic Models from Single-Molecule FRET Data using Bayesian Inference Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.2845  0.34
2013 Lindén M, Johnson S, Meent Jvd, Phillips R, Wiggins CH. Analysis of DNA Looping Kinetics in Tethered Particle Motion Experiments using Hidden Markov Models Biophysical Journal. 104: 4-8. DOI: 10.1016/J.Bpj.2012.11.2329  0.327
2011 Raj A, Dewar M, Palacios G, Rabadan R, Wiggins CH. Identifying hosts of families of viruses: a machine learning approach. Plos One. 6: e27631. PMID 22174744 DOI: 10.1371/Journal.Pone.0027631  0.516
2011 Mugler A, Grinshpun B, Franks R, Wiggins CH. Statistical method for revealing form-function relations in biological networks. Proceedings of the National Academy of Sciences of the United States of America. 108: 446-51. PMID 21183719 DOI: 10.1073/Pnas.1008898108  0.337
2010 Bronson JE, Hofman JM, Fei J, Gonzalez RL, Wiggins CH. Graphical models for inferring single molecule dynamics. Bmc Bioinformatics. 11: S2. PMID 21034427 DOI: 10.1186/1471-2105-11-S8-S2  0.341
2010 Mugler A, Walczak AM, Wiggins CH. Information-optimal transcriptional response to oscillatory driving. Physical Review Letters. 105: 058101. PMID 20867954 DOI: 10.1103/Physrevlett.105.058101  0.31
2010 Li X, Panea C, Wiggins CH, Reinke V, Leslie C. Learning "graph-mer" motifs that predict gene expression trajectories in development. Plos Computational Biology. 6: e1000761. PMID 20454681 DOI: 10.1371/Journal.Pcbi.1000761  0.311
2010 Raj A, Wiggins CH. An information-theoretic derivation of min-cut-based clustering. Ieee Transactions On Pattern Analysis and Machine Intelligence. 32: 988-95. PMID 20431126 DOI: 10.1109/Tpami.2009.124  0.508
2009 Mugler A, Ziv E, Nemenman I, Wiggins CH. Quantifying evolvability in small biological networks. Iet Systems Biology. 3: 379-87. PMID 21028928 DOI: 10.1049/Iet-Syb.2008.0165  0.318
2009 Bronson JE, Fei J, Hofman JM, Gonzalez RL, Wiggins CH. Learning rates and states from biophysical time series: a Bayesian approach to model selection and single-molecule FRET data. Biophysical Journal. 97: 3196-205. PMID 20006957 DOI: 10.1016/J.Bpj.2009.09.031  0.327
2009 Mugler A, Walczak AM, Wiggins CH. Spectral solutions to stochastic models of gene expression with bursts and regulation. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 041921. PMID 19905356 DOI: 10.1103/Physreve.80.041921  0.321
2009 Walczak AM, Mugler A, Wiggins CH. A stochastic spectral analysis of transcriptional regulatory cascades. Proceedings of the National Academy of Sciences of the United States of America. 106: 6529-34. PMID 19351901 DOI: 10.1073/Pnas.0811999106  0.34
2008 Mugler A, Ziv E, Nemenman I, Wiggins CH. Serially regulated biological networks fully realise a constrained set of functions. Iet Systems Biology. 2: 313-22. PMID 19045826 DOI: 10.1049/Iet-Syb:20080097  0.31
2008 Dubin-Thaler BJ, Hofman JM, Cai Y, Xenias H, Spielman I, Shneidman AV, David LA, Döbereiner HG, Wiggins CH, Sheetz MP. Quantification of cell edge velocities and traction forces reveals distinct motility modules during cell spreading. Plos One. 3: e3735. PMID 19011687 DOI: 10.1371/Journal.Pone.0003735  0.328
2008 Hofman JM, Wiggins CH. Bayesian approach to network modularity. Physical Review Letters. 100: 258701. PMID 18643711 DOI: 10.1103/Physrevlett.100.258701  0.311
2007 Ziv E, Nemenman I, Wiggins CH. Optimal signal processing in small stochastic biochemical networks. Plos One. 2: e1077. PMID 17957259 DOI: 10.1371/Journal.Pone.0001077  0.337
2007 Kundaje A, Lianoglou S, Li X, Quigley D, Arias M, Wiggins CH, Zhang L, Leslie C. Learning regulatory programs that accurately predict differential expression with MEDUSA. Annals of the New York Academy of Sciences. 1115: 178-202. PMID 17934055 DOI: 10.1196/Annals.1407.020  0.34
2007 David LA, Wiggins CH. Benchmarking of dynamic Bayesian networks inferred from stochastic time-series data. Annals of the New York Academy of Sciences. 1115: 90-101. PMID 17925346 DOI: 10.1196/Annals.1407.009  0.34
2007 Crut A, Koster DA, Seidel R, Wiggins CH, Dekker NH. Fast dynamics of supercoiled DNA revealed by single-molecule experiments. Proceedings of the National Academy of Sciences of the United States of America. 104: 11957-62. PMID 17623785 DOI: 10.1073/Pnas.0700333104  0.314
2006 Munk T, Hallatschek O, Wiggins CH, Frey E. Dynamics of semiflexible polymers in a flow field. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 74: 041911. PMID 17155100 DOI: 10.1103/Physreve.74.041911  0.352
2006 Margolin AA, Nemenman I, Basso K, Wiggins C, Stolovitzky G, Dalla Favera R, Califano A. ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. Bmc Bioinformatics. 7: S7. PMID 16723010 DOI: 10.1186/1471-2105-7-S1-S7  0.329
2006 Kundaje A, Middendorf M, Shah M, Wiggins CH, Freund Y, Leslie C. A classification-based framework for predicting and analyzing gene regulatory response. Bmc Bioinformatics. 7: S5. PMID 16723008 DOI: 10.1186/1471-2105-7-S1-S5  0.329
2005 Kundaje A, Middendorf M, Gao F, Wiggins C, Leslie C. Combining sequence and time series expression data to learn transcriptional modules. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 2: 194-202. PMID 17044183 DOI: 10.1109/Tcbb.2005.34  0.316
2005 Ziv E, Middendorf M, Wiggins CH. Information-theoretic approach to network modularity. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 71: 046117. PMID 15903736 DOI: 10.1103/Physreve.71.046117  0.308
2005 Middendorf M, Ziv E, Wiggins CH. Inferring network mechanisms: the Drosophila melanogaster protein interaction network. Proceedings of the National Academy of Sciences of the United States of America. 102: 3192-7. PMID 15728374 DOI: 10.1073/Pnas.0409515102  0.315
2005 Ziv E, Koytcheff R, Middendorf M, Wiggins C. Systematic identification of statistically significant network measures. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 71: 016110. PMID 15697661 DOI: 10.1103/Physreve.71.016110  0.324
2004 Middendorf M, Ziv E, Adams C, Hom J, Koytcheff R, Levovitz C, Woods G, Chen L, Wiggins C. Discriminative topological features reveal biological network mechanisms. Bmc Bioinformatics. 5: 181. PMID 15555081 DOI: 10.1186/1471-2105-5-181  0.33
2004 Bohbot-Raviv Y, Zhao WZ, Feingold M, Wiggins CH, Granek R. Relaxation dynamics of semiflexible polymers. Physical Review Letters. 92: 098101. PMID 15089516 DOI: 10.1103/Physrevlett.92.098101  0.315
2001 Belmonte A, Shelley MJ, Eldakar ST, Wiggins CH. Dynamic patterns and self-knotting of a driven hanging chain. Physical Review Letters. 87: 114301. PMID 11531527 DOI: 10.1103/Physrevlett.87.114301  0.329
2001 Wiggins CH. Biopolymer mechanics: stability, dynamics, and statistics Mathematical Methods in the Applied Sciences. 24: 1325-1335. DOI: 10.1002/Mma.182  0.351
1998 Wiggins CH, Riveline D, Ott A, Goldstein RE. Trapping and wiggling: elastohydrodynamics of driven microfilaments. Biophysical Journal. 74: 1043-60. PMID 9533717 DOI: 10.1016/S0006-3495(98)74029-9  0.52
1998 Goldstein RE, Powers TR, Wiggins CH. Viscous Nonlinear Dynamics Of Twist And Writhe Physical Review Letters. 80: 5232-5235. DOI: 10.1103/Physrevlett.80.5232  0.618
1998 Wiggins CH, Goldstein RE. Flexive And Propulsive Dynamics Of Elastica At Low Reynolds Number Physical Review Letters. 80: 3879-3882. DOI: 10.1103/Physrevlett.80.3879  0.511
1997 Riveline D, Wiggins CH, Goldstein RE, Ott A. Elastohydrodynamic study of actin filaments using fluorescence microscopy Physical Review E. 56. DOI: 10.1103/Physreve.56.R1330  0.481
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