Michele Morgante, Ph.D. - Publications

Affiliations: 
1994- Istituto di Genomica Applicata Università di Udine 
 1998-2002 Crop Genomics DuPont Co. 
Area:
Plant genomics, plant genetics, plant breeding

130 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Scalabrin S, Magris G, Liva M, Vitulo N, Vidotto M, Scaglione D, Del Terra L, Ruosi MR, Navarini L, Pellegrino G, Berny Mier Y Teran JC, Toniutti L, Suggi Liverani F, Cerutti M, Di Gaspero G, ... Morgante M, et al. A chromosome-scale assembly reveals chromosomal aberrations and exchanges generating genetic diversity in Coffea arabica germplasm. Nature Communications. 15: 463. PMID 38263403 DOI: 10.1038/s41467-023-44449-8  0.328
2022 Parmar R, Cattonaro F, Phillips C, Vassiliev S, Morgante M, Rajora OP. Assembly and Annotation of Red Spruce () Chloroplast Genome, Identification of Simple Sequence Repeats, and Phylogenetic Analysis in . International Journal of Molecular Sciences. 23. PMID 36499570 DOI: 10.3390/ijms232315243  0.369
2022 Foria S, Magris G, Jurman I, Schwope R, De Candido M, De Luca E, Ivanišević D, Morgante M, Di Gaspero G. Extent of wild-to-crop interspecific introgression in grapevine (Vitis vinifera) as a consequence of resistance breeding and implications for the crop species definition. Horticulture Research. PMID 35039824 DOI: 10.1093/hr/uhab010  0.309
2021 Magris G, Jurman I, Fornasiero A, Paparelli E, Schwope R, Marroni F, Di Gaspero G, Morgante M. The genomes of 204 Vitis vinifera accessions reveal the origin of European wine grapes. Nature Communications. 12: 7240. PMID 34934047 DOI: 10.1038/s41467-021-27487-y  0.368
2020 Chitarrini G, Riccadonna S, Zulini L, Vecchione A, Stefanini M, Larger S, Pindo M, Cestaro A, Franceschi P, Magris G, Foria S, Morgante M, Di Gaspero G, Vrhovsek U. Two-omics data revealed commonalities and differences between Rpv12- and Rpv3-mediated resistance in grapevine. Scientific Reports. 10: 12193. PMID 32699241 DOI: 10.1038/S41598-020-69051-6  0.328
2020 Pinosio S, Marroni F, Zuccolo A, Vitulo N, Mariette S, Sonnante G, Aravanopoulos FA, Ganopoulos I, Palasciano M, Vidotto M, Magris G, Iezzoni A, Giuseppe Vendramin G, Morgante M. A draft genome of sweet cherry (Prunus avium L.) reveals genome-wide and local effects of domestication. The Plant Journal : For Cell and Molecular Biology. PMID 32391598 DOI: 10.1111/Tpj.14809  0.494
2020 Scalabrin S, Toniutti L, Di Gaspero G, Scaglione D, Magris G, Vidotto M, Pinosio S, Cattonaro F, Magni F, Jurman I, Cerutti M, Suggi Liverani F, Navarini L, Del Terra L, Pellegrino G, ... ... Morgante M, et al. A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm. Scientific Reports. 10: 4642. PMID 32170172 DOI: 10.1038/S41598-020-61216-7  0.462
2019 Mariotti R, Fornasiero A, Mousavi S, Cultrera NGM, Brizioli F, Pandolfi S, Passeri V, Rossi M, Magris G, Scalabrin S, Scaglione D, Di Gaspero G, Saumitou-Laprade P, Vernet P, Alagna F, ... Morgante M, et al. Genetic Mapping of the Incompatibility Locus in Olive and Development of a Linked Sequence-Tagged Site Marker. Frontiers in Plant Science. 10: 1760. PMID 32117338 DOI: 10.3389/Fpls.2019.01760  0.429
2019 Foria S, Copetti D, Eisenmann B, Magris G, Vidotto M, Scalabrin S, Testolin R, Cipriani G, Wiedemann-Merdinoglu S, Bogs J, Di Gaspero G, Morgante M. Gene duplication and transposition of mobile elements drive evolution of the Rpv3 resistance locus in grapevine. The Plant Journal : For Cell and Molecular Biology. PMID 31571285 DOI: 10.1111/Tpj.14551  0.423
2019 Magris G, Di Gaspero G, Marroni F, Zenoni S, Tornielli GB, Celii M, De Paoli E, Pezzotti M, Conte F, Paci P, Morgante M. Genetic, epigenetic and genomic effects on variation of gene expression among grape varieties. The Plant Journal : For Cell and Molecular Biology. 99: 895-909. PMID 31034726 DOI: 10.1111/Tpj.14370  0.466
2019 Vendramin V, Ormanbekova D, Scalabrin S, Scaglione D, Maccaferri M, Martelli P, Salvi S, Jurman I, Casadio R, Cattonaro F, Tuberosa R, Massi A, Morgante M. Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm. Bmc Genomics. 20: 278. PMID 30971220 DOI: 10.1186/S12864-019-5645-X  0.445
2019 Scaglione D, Pinosio S, Marroni F, Centa ED, Fornasiero A, Magris G, Scalabrin S, Cattonaro F, Taylor G, Morgante M. Single primer enrichment technology as a tool for massive genotyping: a benchmark on black poplar and maize. Annals of Botany. PMID 30932149 DOI: 10.1093/Aob/Mcz054  0.456
2019 Aguirre NC, Filippi CV, Zaina G, Rivas JG, Acuña CV, Villalba PV, Garcia MN, Gonzalez S, Rivarola ML, Martinez MC, Puebla AF, Morgante M, Hopp HE, Paniego NB, Poltri SNM. Optimizing ddRADseq in Non-Model Species: A Case Study in Eucalyptus dunnii Maiden Agronomy. 9: 484. DOI: 10.3390/Agronomy9090484  0.42
2018 Dal Santo S, Zenoni S, Sandri M, De Lorenzis G, Magris G, De Paoli E, Di Gaspero G, Del Fabbro C, Morgante M, Brancadoro L, Grossi D, Fasoli M, Zuccolotto P, Tornielli GB, Pezzotti M. Grapevine field experiments reveal the contribution of genotype, the influence of environment and the effect of their interaction (G×E) on the berry transcriptome. The Plant Journal : For Cell and Molecular Biology. 93: 1143-1159. PMID 29381239 DOI: 10.1111/Tpj.13834  0.367
2018 Foria S, Magris G, Copetti D, Coleman C, Morgante M, Di Gaspero G. InDel markers for monitoring the introgression of downy mildew resistance from wild relatives into grape varieties Molecular Breeding. 38. DOI: 10.1007/S11032-018-0880-4  0.397
2017 Canaguier A, Grimplet J, Gaspero GD, Scalabrin S, Duchêne E, Choisne N, Mohellibi N, Guichard C, Rombauts S, Clainche IL, Bérard A, Chauveau A, Bounon R, Rustenholz C, Morgante M, et al. A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3) Genomics Data. 14: 56-62. PMID 28971018 DOI: 10.1016/J.Gdata.2017.09.002  0.348
2017 Evangelistella C, Valentini A, Ludovisi R, Firrincieli A, Fabbrini F, Scalabrin S, Cattonaro F, Morgante M, Mugnozza GS, Keurentjes JJB, Harfouche A. De novo assembly, functional annotation, and analysis of the giant reed (Arundo donax L.) leaf transcriptome provide tools for the development of a biofuel feedstock. Biotechnology For Biofuels. 10: 138. PMID 28572841 DOI: 10.1186/S13068-017-0828-7  0.331
2017 Wildhagen H, Paul S, Allwright M, Smith HK, Malinowska M, Schnabel SK, Paulo MJ, Cattonaro F, Vendramin V, Scalabrin S, Janz D, Douthe C, Brendel O, Buré C, Cohen D, ... ... Morgante M, et al. Genes and gene clusters related to genotype and drought-induced variation in saccharification potential, lignin content and wood anatomical traits in Populus nigra†. Tree Physiology. 1-20. PMID 28541580 DOI: 10.1093/Treephys/Tpx054  0.407
2016 Allwright MR, Payne A, Emiliani G, Milner S, Viger M, Rouse F, Keurentjes JJ, Bérard A, Wildhagen H, Faivre-Rampant P, Polle A, Morgante M, Taylor G. Biomass traits and candidate genes for bioenergy revealed through association genetics in coppiced European Populus nigra (L.). Biotechnology For Biofuels. 9: 195. PMID 27617034 DOI: 10.1186/S13068-016-0603-1  0.353
2016 Pinosio S, Giacomello S, Faivre-Rampant P, Taylor G, Jorge V, Le Paslier MC, Zaina G, Bastien C, Cattonaro F, Marroni F, Morgante M. Characterization of the poplar pan-genome by genome-wide identification of structural variation. Molecular Biology and Evolution. PMID 27499133 DOI: 10.1093/Molbev/Msw161  0.515
2016 Jost M, Taketa S, Mascher M, Himmelbach A, Yuo T, Shahinnia F, Rutten T, Druka A, Schmutzer T, Steuernagel B, Beier S, Taudien S, Scholz U, Morgante M, Waugh R, et al. A homolog of Blade-On-Petiole 1 and 2 (BOP1/2) controls internode length and homeotic changes of the barley inflorescence. Plant Physiology. PMID 27208226 DOI: 10.1104/Pp.16.00124  0.445
2016 Chen J, Källman T, Ma XF, Zaina G, Morgante M, Lascoux M. Identifying Genetic Signatures of Natural Selection Using Pooled Population Sequencing in Picea abies. G3 (Bethesda, Md.). PMID 27172202 DOI: 10.1534/G3.116.028753  0.426
2016 Faivre-Rampant P, Zaina G, Jorge V, Giacomello S, Segura V, Scalabrin S, Guérin V, De Paoli E, Aluome C, Viger M, Cattonaro F, Payne A, PaulStephenRaj P, Le Paslier M, Berard A, ... ... Morgante M, et al. New resources for genetic studies in Populus nigra: genome wide SNP discovery and development of a 12k Infinium array. Molecular Ecology Resources. PMID 26929265 DOI: 10.1111/1755-0998.12513  0.475
2016 Wales N, Ramos Madrigal J, Cappellini E, Carmona Baez A, Samaniego Castruita JA, Romero-Navarro JA, Carøe C, Ávila-Arcos MC, Peñaloza F, Moreno-Mayar JV, Gasparyan B, Zardaryan D, Bagoyan T, Smith A, Pinhasi R, ... ... Morgante M, et al. The limits and potential of paleogenomic techniques for reconstructing grapevine domestication Journal of Archaeological Science. 72: 57-70. DOI: 10.1016/J.Jas.2016.05.014  0.467
2016 Giordani T, Cossu RM, Mascagni F, Marroni F, Morgante M, Cavallini A, Natali L. Genome-wide analysis of LTR-retrotransposon expression in leaves of Populus × canadensis water-deprived plants Tree Genetics and Genomes. 12. DOI: 10.1007/S11295-016-1036-5  0.416
2015 Barabaschi D, Magni F, Volante A, Gadaleta A, Šimková H, Scalabrin S, Prazzoli ML, Bagnaresi P, Lacrima K, Michelotti V, Desiderio F, Orrù L, Mazzamurro V, Fricano A, Mastrangelo A, ... ... Morgante M, et al. Physical Mapping of Bread Wheat Chromosome 5A: An Integrated Approach. The Plant Genome. 8: eplantgenome2015.03.. PMID 33228274 DOI: 10.3835/plantgenome2015.03.0011  0.304
2015 Dell'Acqua M, Gatti DM, Pea G, Cattonaro F, Coppens F, Magris G, Hlaing AL, Aung HH, Nelissen H, Baute J, Frascaroli E, Churchill GA, Inzé D, Morgante M, Pè ME. Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays. Genome Biology. 16: 167. PMID 26357913 DOI: 10.1186/S13059-015-0716-Z  0.462
2015 Sanseverino W, Hénaff E, Vives C, Pinosio S, Burgos-Paz W, Morgante M, Ramos-Onsins SE, Garcia-Mas J, Casacuberta JM. Transposon Insertions, Structural Variations, and SNPs Contribute to the Evolution of the Melon Genome. Molecular Biology and Evolution. 32: 2760-74. PMID 26174143 DOI: 10.1093/Molbev/Msv152  0.504
2015 Zuccolo A, Scofield DG, De Paoli E, Morgante M. The Ty1-copia LTR retroelement family PARTC is highly conserved in conifers over 200 MY of evolution. Gene. 568: 89-99. PMID 25982862 DOI: 10.1016/J.Gene.2015.05.028  0.385
2015 Barghini E, Natali L, Giordani T, Cossu RM, Scalabrin S, Cattonaro F, Šimková H, Vrána J, Doležel J, Morgante M, Cavallini A. LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 22: 91-100. PMID 25428895 DOI: 10.1093/Dnares/Dsu042  0.402
2015 Maccaferri M, Ricci A, Salvi S, Milner SG, Noli E, Martelli PL, Casadio R, Akhunov E, Scalabrin S, Vendramin V, Ammar K, Blanco A, Desiderio F, Distelfeld A, Dubcovsky J, ... ... Morgante M, et al. A high-density, SNP-based consensus map of tetraploid wheat as a bridge to integrate durum and bread wheat genomics and breeding. Plant Biotechnology Journal. 13: 648-63. PMID 25424506 DOI: 10.1111/Pbi.12288  0.43
2015 Barabaschi D, Magni F, Volante A, Gadaleta A, Šimková H, Scalabrin S, Prazzoli ML, Bagnaresi P, Lacrima K, Michelotti V, Desiderio F, Orrù L, Mazzamurro V, Fricano A, Mastrangelo A, ... ... Morgante M, et al. Physical Mapping of Bread Wheat Chromosome 5A: An Integrated Approach The Plant Genome. 8: plantgenome2015.03.0. DOI: 10.3835/Plantgenome2015.03.0011  0.414
2014 Lind M, Källman T, Chen J, Ma XF, Bousquet J, Morgante M, Zaina G, Karlsson B, Elfstrand M, Lascoux M, Stenlid J. A Picea abies linkage map based on SNP markers identifies QTLS for four aspects of resistance to Heterobasidion parviporum infection Plos One. 9. PMID 25036209 DOI: 10.1371/Journal.Pone.0101049  0.434
2014 Wu GA, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, Perrier X, Ruiz M, Scalabrin S, Terol J, Takita MA, Labadie K, Poulain J, Couloux A, Jabbari K, ... ... Morgante M, et al. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nature Biotechnology. 32: 656-62. PMID 24908277 DOI: 10.1038/Nbt.2906  0.445
2014 Barghini E, Natali L, Cossu RM, Giordani T, Pindo M, Cattonaro F, Scalabrin S, Velasco R, Morgante M, Cavallini A. The peculiar landscape of repetitive sequences in the olive (Olea europaea L.) genome. Genome Biology and Evolution. 6: 776-91. PMID 24671744 DOI: 10.1093/Gbe/Evu058  0.477
2014 Wang S, Wong D, Forrest K, Allen A, Chao S, Huang BE, Maccaferri M, Salvi S, Milner SG, Cattivelli L, Mastrangelo AM, Whan A, Stephen S, Barker G, Wieseke R, ... ... Morgante M, et al. Characterization of polyploid wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism array. Plant Biotechnology Journal. 12: 787-96. PMID 24646323 DOI: 10.1111/Pbi.12183  0.438
2014 Marroni F, Pinosio S, Morgante M. Structural variation and genome complexity: is dispensable really dispensable? Current Opinion in Plant Biology. 18: 31-6. PMID 24548794 DOI: 10.1016/J.Pbi.2014.01.003  0.465
2013 Del Fabbro C, Scalabrin S, Morgante M, Giorgi FM. An extensive evaluation of read trimming effects on Illumina NGS data analysis. Plos One. 8: e85024. PMID 24376861 DOI: 10.1371/Journal.Pone.0085024  0.408
2013 Natali L, Cossu RM, Barghini E, Giordani T, Buti M, Mascagni F, Morgante M, Gill N, Kane NC, Rieseberg L, Cavallini A. The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads. Bmc Genomics. 14: 686. PMID 24093210 DOI: 10.1186/1471-2164-14-686  0.453
2013 Falchi R, Vendramin E, Zanon L, Scalabrin S, Cipriani G, Verde I, Vizzotto G, Morgante M. Three distinct mutational mechanisms acting on a single gene underpin the origin of yellow flesh in peach. The Plant Journal : For Cell and Molecular Biology. 76: 175-87. PMID 23855972 DOI: 10.1111/Tpj.12283  0.429
2013 Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A, Vicedomini R, Sahlin K, Sherwood E, Elfstrand M, Gramzow L, ... ... Morgante M, et al. The Norway spruce genome sequence and conifer genome evolution. Nature. 497: 579-84. PMID 23698360 DOI: 10.1038/Nature12211  0.471
2013 Venuti S, Copetti D, Foria S, Falginella L, Hoffmann S, Bellin D, Cindrić P, Kozma P, Scalabrin S, Morgante M, Testolin R, Di Gaspero G. Historical introgression of the downy mildew resistance gene Rpv12 from the Asian species Vitis amurensis into grapevine varieties. Plos One. 8: e61228. PMID 23593440 DOI: 10.1371/Journal.Pone.0061228  0.402
2013 Verde I, Abbott AG, Scalabrin S, Jung S, Shu S, Marroni F, Zhebentyayeva T, Dettori MT, Grimwood J, Cattonaro F, Zuccolo A, Rossini L, Jenkins J, Vendramin E, ... ... Morgante M, et al. The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. Nature Genetics. 45: 487-94. PMID 23525075 DOI: 10.1038/Ng.2586  0.492
2013 Vanholme B, Cesarino I, Goeminne G, Kim H, Marroni F, Van Acker R, Vanholme R, Morreel K, Ivens B, Pinosio S, Morgante M, Ralph J, Bastien C, Boerjan W. Breeding with rare defective alleles (BRDA): a natural Populus nigra HCT mutant with modified lignin as a case study. The New Phytologist. 198: 765-76. PMID 23432219 DOI: 10.1111/Nph.12179  0.389
2013 Morgante M. Structural variation and the plant pan genomes Embnet.Journal. 19: 11. DOI: 10.14806/Ej.19.A.682  0.469
2012 Marroni F, Pinosio S, Morgante M. The quest for rare variants: pooled multiplexed next generation sequencing in plants. Frontiers in Plant Science. 3: 133. PMID 22754557 DOI: 10.3389/Fpls.2012.00133  0.413
2012 Chen J, Källman T, Ma X, Gyllenstrand N, Zaina G, Morgante M, Bousquet J, Eckert A, Wegrzyn J, Neale D, Lagercrantz U, Lascoux M. Disentangling the roles of history and local selection in shaping clinal variation of allele frequencies and gene expression in Norway spruce (Picea abies). Genetics. 191: 865-81. PMID 22542968 DOI: 10.1534/Genetics.112.140749  0.432
2012 Verde I, Bassil N, Scalabrin S, Gilmore B, Lawley CT, Gasic K, Micheletti D, Rosyara UR, Cattonaro F, Vendramin E, Main D, Aramini V, Blas AL, Mockler TC, Bryant DW, ... ... Morgante M, et al. Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm. Plos One. 7: e35668. PMID 22536421 DOI: 10.1371/Journal.Pone.0035668  0.441
2012 Jung S, Cestaro A, Troggio M, Main D, Zheng P, Cho I, Folta KM, Sosinski B, Abbott A, Celton JM, Arús P, Shulaev V, Verde I, Morgante M, Rokhsar D, et al. Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies. Bmc Genomics. 13: 129. PMID 22475018 DOI: 10.1186/1471-2164-13-129  0.432
2012 Fabbrini F, Gaudet M, Bastien C, Zaina G, Harfouche A, Beritognolo I, Marron N, Morgante M, Scarascia-Mugnozza G, Sabatti M. Phenotypic plasticity, QTL mapping and genomic characterization of bud set in black poplar. Bmc Plant Biology. 12: 47. PMID 22471289 DOI: 10.1186/1471-2229-12-47  0.4
2012 Houston K, Druka A, Bonar N, Macaulay M, Lundqvist U, Franckowiak J, Morgante M, Stein N, Waugh R. Analysis of the barley bract suppression gene Trd1. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 125: 33-45. PMID 22395962 DOI: 10.1007/S00122-012-1814-X  0.426
2012 Harfouche A, Meilan R, Kirst M, Morgante M, Boerjan W, Sabatti M, Scarascia Mugnozza G. Accelerating the domestication of forest trees in a changing world. Trends in Plant Science. 17: 64-72. PMID 22209522 DOI: 10.1016/J.Tplants.2011.11.005  0.316
2012 Shahinnia F, Druka A, Franckowiak J, Morgante M, Waugh R, Stein N. High resolution mapping of Dense spike-ar (dsp.ar) to the genetic centromere of barley chromosome 7H. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 124: 373-84. PMID 21959909 DOI: 10.1007/S00122-011-1712-7  0.446
2012 Di Gaspero G, Copetti D, Coleman C, Castellarin SD, Eibach R, Kozma P, Lacombe T, Gambetta G, Zvyagin A, Cindrić P, Kovács L, Morgante M, Testolin R. Selective sweep at the Rpv3 locus during grapevine breeding for downy mildew resistance. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 124: 277-86. PMID 21947344 DOI: 10.1007/S00122-011-1703-8  0.352
2012 Larsson H, De Paoli E, Morgante M, Lascoux M, Gyllenstrand N. The Hypomethylated Partial Restriction (HMPR) method reduces the repetitive content of genomic libraries in Norway spruce (Picea abies) Tree Genetics & Genomes. 9: 601-612. DOI: 10.1007/S11295-012-0582-8  0.402
2011 Buti M, Giordani T, Cattonaro F, Cossu RM, Pistelli L, Vukich M, Morgante M, Cavallini A, Natali L. Temporal dynamics in the evolution of the sunflower genome as revealed by sequencing and annotation of three large genomic regions. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 123: 779-91. PMID 21647740 DOI: 10.1007/S00122-011-1626-4  0.493
2011 Marroni F, Pinosio S, Di Centa E, Jurman I, Boerjan W, Felice N, Cattonaro F, Morgante M. Large-scale detection of rare variants via pooled multiplexed next-generation sequencing: towards next-generation Ecotilling. The Plant Journal : For Cell and Molecular Biology. 67: 736-45. PMID 21554453 DOI: 10.1111/J.1365-313X.2011.04627.X  0.464
2011 Giordani T, Buti M, Natali L, Pugliesi C, Cattonaro F, Morgante M, Cavallini A. An analysis of sequence variability in eight genes putatively involved in drought response in sunflower (Helianthus annuus L.) Theoretical and Applied Genetics. 122: 1039-1049. PMID 21184050 DOI: 10.1007/S00122-010-1509-0  0.467
2011 Druka A, Franckowiak J, Lundqvist U, Bonar N, Alexander J, Houston K, Radovic S, Shahinnia F, Vendramin V, Morgante M, Stein N, Waugh R. Genetic dissection of barley morphology and development. Plant Physiology. 155: 617-27. PMID 21088227 DOI: 10.1104/Pp.110.166249  0.459
2011 Rohde A, Storme V, Jorge V, Gaudet M, Vitacolonna N, Fabbrini F, Ruttink T, Zaina G, Marron N, Dillen S, Steenackers M, Sabatti M, Morgante M, Boerjan W, Bastien C. Bud set in poplar - genetic dissection of a complex trait in natural and hybrid populations New Phytologist. 189: 106-121. PMID 21039557 DOI: 10.1111/J.1469-8137.2010.03469.X  0.385
2011 Marroni F, Pinosio S, Zaina G, Fogolari F, Felice N, Cattonaro F, Morgante M. Nucleotide diversity and linkage disequilibrium in Populus nigra cinnamyl alcohol dehydrogenase (CAD4) gene Tree Genetics & Genomes. 7: 1011-1023. DOI: 10.1007/S11295-011-0391-5  0.401
2011 Kremer A, Vinceti B, Alia R, Burczyk J, Cavers S, Degen B, Finkeldey R, Fluch S, Gömöry D, Gugerli F, Koelewijn HP, Koskela J, Lefèvre F, Morgante M, Mueller-Starck G, et al. Forest ecosystem genomics and adaptation: EVOLTREE conference report Tree Genetics and Genomes. 7: 869-875. DOI: 10.1007/S11295-011-0378-2  0.374
2010 Cipriani G, Spadotto A, Jurman I, Di Gaspero G, Crespan M, Meneghetti S, Frare E, Vignani R, Cresti M, Morgante M, Pezzotti M, Pe E, Policriti A, Testolin R. The SSR-based molecular profile of 1005 grapevine (Vitis vinifera L.) accessions uncovers new synonymy and parentages, and reveals a large admixture amongst varieties of different geographic origin. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 121: 1569-85. PMID 20689905 DOI: 10.1007/S00122-010-1411-9  0.369
2010 Scalabrin S, Troggio M, Moroldo M, Pindo M, Felice N, Coppola G, Prete G, Malacarne G, Marconi R, Faes G, Jurman I, Grando S, Jesse T, Segala C, Valle G, ... ... Morgante M, et al. Physical mapping in highly heterozygous genomes: a physical contig map of the Pinot Noir grapevine cultivar. Bmc Genomics. 11: 204. PMID 20346114 DOI: 10.1186/1471-2164-11-204  0.491
2010 Druka A, Franckowiak J, Lundqvist U, Bonar N, Alexander J, Guzy-Wrobelska J, Ramsay L, Druka I, Grant I, Macaulay M, Vendramin V, Shahinnia F, Radovic S, Houston K, Harrap D, ... ... Morgante M, et al. Exploiting induced variation to dissect quantitative traits in barley. Biochemical Society Transactions. 38: 683-8. PMID 20298243 DOI: 10.1042/Bst0380683  0.513
2010 Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS. Correction: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera. Bmc Genomics. 11: 109. PMID 20152027 DOI: 10.1186/1471-2164-11-109  0.369
2010 Cavallini A, Natali L, Zuccolo A, Giordani T, Jurman I, Ferrillo V, Vitacolonna N, Sarri V, Cattonaro F, Ceccarelli M, Cionini PG, Morgante M. Analysis of transposons and repeat composition of the sunflower (Helianthus annuus L.) genome Theoretical and Applied Genetics. 120: 491-508. PMID 19826774 DOI: 10.1007/S00122-009-1170-7  0.455
2009 Coleman C, Copetti D, Cipriani G, Hoffmann S, Kozma P, Kovács L, Morgante M, Testolin R, Di Gaspero G. The powdery mildew resistance gene REN1 co-segregates with an NBS-LRR gene cluster in two Central Asian grapevines. Bmc Genetics. 10: 89. PMID 20042081 DOI: 10.1186/1471-2156-10-89  0.348
2009 Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS. High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera. Bmc Genomics. 10: 558. PMID 19939267 DOI: 10.1186/1471-2164-10-558  0.383
2009 Buti M, Giordani T, Vukich M, Gentzbittel L, Pistelli L, Cattonaro F, Morgante M, Cavallini A, Natali L. HACRE1, a recently inserted copia-like retrotransposon of sunflower (Helianthus annuus L.) Genome. 52: 904-911. PMID 19935914 DOI: 10.1139/G09-064  0.412
2009 Bellin D, Peressotti E, Merdinoglu D, Wiedemann-Merdinoglu S, Adam-Blondon AF, Cipriani G, Morgante M, Testolin R, Di Gaspero G. Resistance to Plasmopara viticola in grapevine 'Bianca' is controlled by a major dominant gene causing localised necrosis at the infection site. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 120: 163-76. PMID 19821064 DOI: 10.1007/S00122-009-1167-2  0.374
2009 Scalabrin S, Morgante M, Policriti A. Automated FingerPrint Background removal: FPB. Bmc Bioinformatics. 10: 127. PMID 19405935 DOI: 10.1186/1471-2105-10-127  0.414
2009 von Korff M, Radovic S, Choumane W, Stamati K, Udupa SM, Grando S, Ceccarelli S, Mackay I, Powell W, Baum M, Morgante M. Asymmetric allele-specific expression in relation to developmental variation and drought stress in barley hybrids. The Plant Journal : For Cell and Molecular Biology. 59: 14-26. PMID 19309461 DOI: 10.1111/J.1365-313X.2009.03848.X  0.357
2009 Wicker T, Sabot F, Hua-Van A, Bennetzen JL, Capy P, Chalhoub B, Flavell A, Leroy P, Morgante M, Panaud O, Paux E, SanMiguel P, Schulman AH. A unified classification system for eukaryotic transposable elements should reflect their phylogeny. Nature Reviews Genetics. 10: 276-276. PMID 19238178 DOI: 10.1038/Nrg2165-C3  0.414
2009 Frascaroli E, Canè MA, Pè ME, Pea G, Morgante M, Landi P. QTL detection in maize testcross progenies as affected by related and unrelated testers. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 118: 993-1004. PMID 19183862 DOI: 10.1007/S00122-008-0956-3  0.334
2009 Pea G, Paulstephenraj P, Canè MA, Sardaro ML, Landi P, Morgante M, Porceddu E, Pè ME, Frascaroli E. Recombinant near-isogenic lines: a resource for the mendelization of heterotic QTL in maize. Molecular Genetics and Genomics : Mgg. 281: 447-57. PMID 19152004 DOI: 10.1007/S00438-008-0422-6  0.412
2008 Natali L, Ceccarelli M, Giordani T, Sarri V, Zuccolo A, Jurman I, Morgante M, Cavallini A, Cionini PG. Phylogenetic relationships between annual and perennial species of Helianthus: Evolution of a tandem repeated DNA sequence and cytological hybridization experiments Genome. 51: 1047-1053. PMID 19088818 DOI: 10.1139/G08-089  0.39
2008 Cipriani G, Marrazzo MT, Di Gaspero G, Pfeiffer A, Morgante M, Testolin R. A set of microsatellite markers with long core repeat optimized for grape (Vitis spp.) genotyping. Bmc Plant Biology. 8: 127. PMID 19087321 DOI: 10.1186/1471-2229-8-127  0.437
2008 Denoeud F, Aury JM, Da Silva C, Noel B, Rogier O, Delledonne M, Morgante M, Valle G, Wincker P, Scarpelli C, Jaillon O, Artiguenave F. Annotating genomes with massive-scale RNA sequencing. Genome Biology. 9: R175. PMID 19087247 DOI: 10.1186/Gb-2008-9-12-R175  0.355
2008 Moroldo M, Paillard S, Marconi R, Fabrice L, Canaguier A, Cruaud C, De Berardinis V, Guichard C, Brunaud V, Le Clainche I, Scalabrin S, Testolin R, Di Gaspero G, Morgante M, Adam-Blondon AF. A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistance. Bmc Plant Biology. 8: 66. PMID 18554400 DOI: 10.1186/1471-2229-8-66  0.448
2007 Wicker T, Sabot F, Hua-Van A, Bennetzen JL, Capy P, Chalhoub B, Flavell A, Leroy P, Morgante M, Panaud O, Paux E, SanMiguel P, Schulman AH. A unified classification system for eukaryotic transposable elements. Nature Reviews. Genetics. 8: 973-82. PMID 17984973 DOI: 10.1038/Nrg2165  0.413
2007 Tan X, Meyers BC, Kozik A, West MA, Morgante M, St Clair DA, Bent AF, Michelmore RW. Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in Arabidopsis. Bmc Plant Biology. 7: 56. PMID 17956627 DOI: 10.1186/1471-2229-7-56  0.669
2007 Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, ... ... Morgante M, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature. 449: 463-7. PMID 17721507 DOI: 10.1038/Nature06148  0.484
2007 Troggio M, Malacarne G, Coppola G, Segala C, Cartwright DA, Pindo M, Stefanini M, Mank R, Moroldo M, Morgante M, Grando MS, Velasco R. A dense single-nucleotide polymorphism-based genetic linkage map of grapevine (Vitis vinifera L.) anchoring Pinot Noir bacterial artificial chromosome contigs. Genetics. 176: 2637-50. PMID 17603124 DOI: 10.1534/Genetics.106.067462  0.422
2007 Salvi S, Sponza G, Morgante M, Tomes D, Niu X, Fengler KA, Meeley R, Ananiev EV, Svitashev S, Bruggemann E, Li B, Hainey CF, Radovic S, Zaina G, Rafalski JA, et al. Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize. Proceedings of the National Academy of Sciences of the United States of America. 104: 11376-81. PMID 17595297 DOI: 10.1073/Pnas.0704145104  0.477
2007 Frascaroli E, Canè MA, Landi P, Pea G, Gianfranceschi L, Villa M, Morgante M, Pè ME. Classical genetic and quantitative trait loci analyses of heterosis in a maize hybrid between two elite inbred lines. Genetics. 176: 625-44. PMID 17339211 DOI: 10.1534/Genetics.106.064493  0.395
2007 Morgante M, De Paoli E, Radovic S. Transposable elements and the plant pan-genomes. Current Opinion in Plant Biology. 10: 149-55. PMID 17300983 DOI: 10.1016/J.Pbi.2007.02.001  0.481
2006 Heuertz M, De Paoli E, Källman T, Larsson H, Jurman I, Morgante M, Lascoux M, Gyllenstrand N. Multilocus patterns of nucleotide diversity, linkage disequilibrium and demographic history of Norway spruce [Picea abies (L.) Karst]. Genetics. 174: 2095-105. PMID 17057229 DOI: 10.1534/Genetics.106.065102  0.382
2006 Morgante M. Plant genome organisation and diversity: the year of the junk! Current Opinion in Biotechnology. 17: 168-73. PMID 16530402 DOI: 10.1016/J.Copbio.2006.03.001  0.504
2006 Scotti I, Paglia G, Magni F, Morgante M. Population genetics of Norway spruce (Picea abies Karst.) at regional scale: Sensitivity of different microsatellite motif classes in detecting differentiation Annals of Forest Science. 63: 485-491. DOI: 10.1051/Forest:2006029  0.366
2005 Morgante M, Brunner S, Pea G, Fengler K, Zuccolo A, Rafalski A. Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize. Nature Genetics. 37: 997-1002. PMID 16056225 DOI: 10.1038/Ng1615  0.506
2005 Brunner S, Fengler K, Morgante M, Tingey S, Rafalski A. Evolution of DNA sequence nonhomologies among maize inbreds. The Plant Cell. 17: 343-60. PMID 15659640 DOI: 10.1105/Tpc.104.025627  0.489
2005 Scotti I, Burelli A, Cattonaro F, Chagné D, Fuller J, Hedley PE, Jansson G, Lalanne C, Madur D, Neale D, Plomion C, Powell W, Troggio M, Morgante M. Analysis of the distribution of marker classes in a genetic linkage map: A case study in Norway spruce (Picea abies karst) Tree Genetics and Genomes. 1: 93-102. DOI: 10.1007/S11295-005-0012-2  0.452
2004 Jung M, Ching A, Bhattramakki D, Dolan M, Tingey S, Morgante M, Rafalski A. Linkage disequilibrium and sequence diversity in a 500-kbp region around the adh1 locus in elite maize germplasm. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 109: 681-9. PMID 15300382 DOI: 10.1007/S00122-004-1695-8  0.342
2004 Meyers BC, Scalabrin S, Morgante M. Mapping and sequencing complex genomes: let's get physical! Nature Reviews. Genetics. 5: 578-88. PMID 15266340 DOI: 10.1038/Nrg1404  0.586
2004 Palaisa K, Morgante M, Tingey S, Rafalski A. Long-range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep. Proceedings of the National Academy of Sciences of the United States of America. 101: 9885-90. PMID 15161968 DOI: 10.1073/Pnas.0307839101  0.44
2004 Gardiner J, Schroeder S, Polacco ML, Sanchez-Villeda H, Fang Z, Morgante M, Landewe T, Fengler K, Useche F, Hanafey M, Tingey S, Chou H, Wing R, Soderlund C, Coe EH. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Plant Physiology. 134: 1317-26. PMID 15020742 DOI: 10.1104/Pp.103.034538  0.481
2004 Rafalski A, Morgante M. Corn and humans: recombination and linkage disequilibrium in two genomes of similar size. Trends in Genetics : Tig. 20: 103-11. PMID 14746992 DOI: 10.1016/J.Tig.2003.12.002  0.509
2003 Hoth S, Ikeda Y, Morgante M, Wang X, Zuo J, Hanafey MK, Gaasterland T, Tingey SV, Chua NH. Monitoring genome-wide changes in gene expression in response to endogenous cytokinin reveals targets in Arabidopsis thaliana. Febs Letters. 554: 373-80. PMID 14623097 DOI: 10.1016/S0014-5793(03)01194-3  0.412
2003 Palaisa KA, Morgante M, Williams M, Rafalski A. Contrasting effects of selection on sequence diversity and linkage disequilibrium at two phytoene synthase loci. The Plant Cell. 15: 1795-806. PMID 12897253 DOI: 10.1105/Tpc.012526  0.422
2003 Morgante M, Salamini F. From plant genomics to breeding practice. Current Opinion in Biotechnology. 14: 214-9. PMID 12732323 DOI: 10.1016/S0958-1669(03)00028-4  0.492
2002 Scotti I, Magni F, Paglia GP, Morgante M. Trinucleotide microsatellites in Norway spruce ( Picea abies): their features and the development of molecular markers. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 106: 40-50. PMID 12582869 DOI: 10.1007/S00122-002-0986-1  0.47
2002 Scotti I, Paglia P, Magni F, Morgante M. Efficient development of dinucleotide microsatellite markers in Norway spruce ( Picea abies Karst.) through dot-blot selection. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 104: 1035-1041. PMID 12582609 DOI: 10.1007/S00122-001-0843-7  0.429
2002 Hoth S, Morgante M, Sanchez JP, Hanafey MK, Tingey SV, Chua NH. Genome-wide gene expression profiling in Arabidopsis thaliana reveals new targets of abscisic acid and largely impaired gene regulation in the abi1-1 mutant. Journal of Cell Science. 115: 4891-900. PMID 12432076 DOI: 10.1242/Jcs.00175  0.4
2002 Ching A, Caldwell KS, Jung M, Dolan M, Smith OS, Tingey S, Morgante M, Rafalski AJ. SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines. Bmc Genetics. 3: 19. PMID 12366868 DOI: 10.1186/1471-2156-3-19  0.369
2002 Meyers BC, Morgante M, Michelmore RW. TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes. The Plant Journal : For Cell and Molecular Biology. 32: 77-92. PMID 12366802 DOI: 10.1046/J.1365-313X.2002.01404.X  0.671
2002 van Buuren ML, Salvi S, Morgante M, Serhani B, Tuberosa R. Comparative genomic mapping between a 754 kb region flanking DREB1A in Arabidopsis thaliana and maize. Plant Molecular Biology. 48: 741-50. PMID 11999847 DOI: 10.1023/a:1014890008579  0.421
2002 Morgante M, Hanafey M, Powell W. Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nature Genetics. 30: 194-200. PMID 11799393 DOI: 10.1038/Ng822  0.456
2001 Meyers BC, Tingey SV, Morgante M. Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome. Genome Research. 11: 1660-76. PMID 11591643 DOI: 10.1101/Gr.188201  0.624
1999 Tenzer I, Ivanissevich Sd, Morgante M, Gessler C. Identification of Microsatellite Markers and Their Application to Population Genetics of Venturia inaequalis. Phytopathology. 89: 748-753. PMID 18944702 DOI: 10.1094/Phyto.1999.89.9.748  0.371
1999 Ramsay L, Macaulay M, Cardle L, Morgante M, degli Ivanissevich S, Maestri E, Powell W, Waugh R. Intimate association of microsatellite repeats with retrotransposons and other dispersed repetitive elements in barley. The Plant Journal : For Cell and Molecular Biology. 17: 415-25. PMID 10205898 DOI: 10.1046/J.1365-313X.1999.00392.X  0.437
1999 Provan J, Lawrence P, Young G, Wright F, Bird R, Paglia G, Cattonaro F, Morgante M, Powell W. Analysis of the genusZea (Poaceae) using polymorphic chloroplast simple sequence repeats Plant Systematics and Evolution. 218: 245-256. DOI: 10.1007/Bf01089230  0.439
1998 Peakall R, Gilmore S, Keys W, Morgante M, Rafalski A. Cross-species amplification of soybean (Glycine max) simple sequence repeats (SSRs) within the genus and other legume genera: implications for the transferability of SSRs in plants. Molecular Biology and Evolution. 15: 1275-87. PMID 9787434 DOI: 10.1093/OXFORDJOURNALS.MOLBEV.A025856  0.334
1998 Paglia GP, Olivieri AM, Morgante M. Towards second-generation STS (sequence-tagged sites) linkage maps in conifers: a genetic map of Norway spruce (Picea abies K.). Molecular & General Genetics : Mgg. 258: 466-78. PMID 9669328 DOI: 10.1007/S004380050757  0.437
1998 Doyle JJ, Morgante M, Tingey SV, Powell W. Size homoplasy in chloroplast microsatellites of wild perennial relatives of soybean (Glycine subgenus Glycine) Molecular Biology and Evolution. 15: 215-218. PMID 9491617 DOI: 10.1093/Oxfordjournals.Molbev.A025916  0.428
1998 Morgante M, Jurman I, Shi L, Zhu T, Keim P, Rafalski JA. The STR120 satellite DNA of soybean: organization, evolution and chromosomal specificity. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 5: 363-73. PMID 9364938 DOI: 10.1023/A:1018492208247  0.419
1998 Paglia G, Morgante M. Molecular Breeding. 4: 173-177. DOI: 10.1023/A:1009637608702  0.427
1998 Huang W, Cipriani G, Morgante M, Testolin R. Microsatellite DNA in Actinidia chinensis: isolation, characterisation, and homology in related species Theoretical and Applied Genetics. 97: 1269-1278. DOI: 10.1007/S001220051019  0.424
1998 Pejic I, Ajmone-Marsan P, Morgante M, Kozumplick V, Castiglioni P, Taramino G, Motto M. Comparative analysis of genetic similarity among maize inbred lines detected by RFLPs, RAPDs, SSRs, and AFLPs Theoretical and Applied Genetics. 97: 1248-1255. DOI: 10.1007/S001220051017  0.407
1997 Pfeiffer A, Olivieri AM, Morgante M. Identification and characterization of microsatellites in Norway spruce (Picea abies K.). Genome. 40: 411-9. PMID 9276931 DOI: 10.1139/G97-055  0.481
1997 De Simone M, Morgante M, Lucchin M, Parrini P, Marocco A. Molecular Breeding. 3: 415-425. DOI: 10.1023/A:1009616801404  0.397
1996 Provan J, Corbett G, Waugh R, McNicol JW, Morgante M, Powell W. DNA fingerprints of rice (Oryza sativa) obtained from hypervariable chloroplast simple sequence repeats. Proceedings. Biological Sciences. 263: 1275-81. PMID 8914327 DOI: 10.1098/Rspb.1996.0187  0.445
1996 Powell W, Morgante M, Andre C, McNicol JW, Machray GC, Doyle JJ, Tingey SV, Rafalski JA. Hypervariable microsatellites provide a general source of polymorphic DNA markers for the chloroplast genome. Current Biology : Cb. 5: 1023-9. PMID 8542278 DOI: 10.1016/S0960-9822(95)00206-5  0.471
1996 Vogel J, Rafalski A, Powell W, Morgante M, Andre C, Hanafey M, Tingey S. Application of Genetic Diagnostics to Plant Genome Analysis and Plant Breeding Hortscience. 31: 1107-1108. DOI: 10.21273/Hortsci.31.7.1107  0.399
1996 Powell W, Morgante M, Andre C, Hanafey M, Vogel J, Tingey S, Rafalski A. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis Molecular Breeding. 2: 225-238. DOI: 10.1007/Bf00564200  0.387
1995 Powell W, Morgante M, McDevitt R, Vendramin GG, Rafalski JA. Polymorphic simple sequence repeat regions in chloroplast genomes: applications to the population genetics of pines. Proceedings of the National Academy of Sciences of the United States of America. 92: 7759-63. PMID 7644491 DOI: 10.1073/Pnas.92.17.7759  0.538
1995 Cipriani G, Testolin R, Morgante M. Paternal inheritance of plastids in interspecific hybrids of the genus Actinidia revealed by PCR-amplification of chloroplast DNA fragments. Molecular & General Genetics : Mgg. 247: 693-7. PMID 7616960 DOI: 10.1007/Bf00290400  0.342
1994 Morgante M, Rafalski A, Biddle P, Tingey S, Olivieri AM. Genetic mapping and variability of seven soybean simple sequence repeat loci. Genome. 37: 763-9. PMID 8001811 DOI: 10.1139/G94-109  0.508
1994 Boscherini G, Morgante M, Rossi P, Vendramin GG. Allozyme and chloroplast DNA variation in Italian and Greek populations of Pinus leucodermis. Heredity. 284-90. PMID 7928395 DOI: 10.1038/Hdy.1994.135  0.36
1993 Morgante M, Olivieri A. PCR-amplified microsatellites as markers in plant genetics The Plant Journal. 3: 175-182. DOI: 10.1046/J.1365-313X.1993.T01-9-00999.X  0.442
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