| Year |
Citation |
Score |
| 2021 |
Oakley BB, Melgarejo T, Bloom PH, Abedi N, Blumhagen E, Saggese MD. Emerging Pathogenic Gammaproteobacteria and Species in a Turkey Vulture (). Journal of Avian Medicine and Surgery. 35: 280-289. PMID 34677026 DOI: 10.1647/19-00033 |
0.323 |
|
| 2019 |
Swift SM, Etobayeva IV, Reid KP, Waters JJ, Oakley BB, Donovan DM, Nelson DC. Characterization of LysBC17, a Lytic Endopeptidase from . Antibiotics (Basel, Switzerland). 8. PMID 31546935 DOI: 10.3390/Antibiotics8030155 |
0.353 |
|
| 2019 |
Kumar S, Adhikari P, Oakley B, Kim WK. Changes in cecum microbial community in response to total sulfur amino acid (TSAA: DL-methionine) in antibiotic-free and supplemented poultry birds. Poultry Science. PMID 31347673 DOI: 10.3382/Ps/Pez380 |
0.345 |
|
| 2018 |
Shang Y, Kumar S, Oakley B, Kim WK. Chicken Gut Microbiota: Importance and Detection Technology. Frontiers in Veterinary Science. 5: 254. PMID 30406117 DOI: 10.3389/Fvets.2018.00254 |
0.346 |
|
| 2018 |
Chan D, Geiger JA, Vasconcelos EJR, Oakley B, Diniz PPVP. Detection by a Sensitive and Specific PCR Platform. The American Journal of Tropical Medicine and Hygiene. PMID 30084343 DOI: 10.4269/Ajtmh.17-0740 |
0.361 |
|
| 2018 |
Seal BS, Drider D, Oakley BB, Brüssow H, Bikard D, Rich JO, Miller S, Devillard E, Kwan J, Bertin G, Reeves S, Swift SM, Raicek M, Gay CG. Microbial-derived products as potential new antimicrobials. Veterinary Research. 49: 66. PMID 30060765 DOI: 10.1186/S13567-018-0563-5 |
0.321 |
|
| 2018 |
Oakley BB, Vasconcelos EJR, Diniz PPVP, Calloway KN, Richardson E, Meinersmann RJ, Cox NA, Berrang ME. The cecal microbiome of commercial broiler chickens varies significantly by season. Poultry Science. PMID 30016503 DOI: 10.3382/Ps/Pey214 |
0.396 |
|
| 2018 |
Swift SM, Waters JJ, Rowley DT, Oakley BB, Donovan DM. Characterization of two glycosyl hydrolases, putative prophage endolysins, that target Clostridium perfringens. Fems Microbiology Letters. PMID 30010898 DOI: 10.1093/Femsle/Fny179 |
0.319 |
|
| 2018 |
Geiger J, Morton BA, Vasconcelos EJR, Tngrian M, Kachani M, Barrón EA, Gavidia CM, Gilman RH, Angulo NP, Lerner R, Tamerin S, Mirrashed H, Oakley B, Diniz PPVP. Molecular Characterization of Tandem Repeat Protein 36 Gene of Detected in Naturally Infected Dogs from Peru. The American Journal of Tropical Medicine and Hygiene. PMID 29943707 DOI: 10.4269/Ajtmh.17-0776 |
0.331 |
|
| 2018 |
Vasconcelos EJR, Billeter SA, Jett LA, Meinersmann RJ, Barr MC, Diniz PPVP, Oakley BB. Assessing Cat Flea Microbiomes in Northern and Southern California by 16S rRNA Next-Generation Sequencing. Vector Borne and Zoonotic Diseases (Larchmont, N.Y.). PMID 29893631 DOI: 10.1089/vbz.2018.2282 |
0.302 |
|
| 2017 |
King HC, Khera-Butler T, James P, Oakley BB, Erenso G, Aseffa A, Knight R, Wellington EM, Courtenay O. Environmental reservoirs of pathogenic mycobacteria across the Ethiopian biogeographical landscape. Plos One. 12: e0173811. PMID 28333945 DOI: 10.1371/Journal.Pone.0173811 |
0.366 |
|
| 2016 |
Berrang ME, Ladely SR, Meinersmann RJ, Line JE, Oakley BB, Cox NA. Variation in Campylobacter Multilocus Sequence Typing Subtypes from Chickens as Detected on Three Plating Media. Journal of Food Protection. 79: 1986-1989. PMID 28221919 DOI: 10.4315/0362-028X.Jfp-16-188 |
0.369 |
|
| 2016 |
Bradshaw JK, Snyder BJ, Oladeinde A, Spidle D, Berrang ME, Meinersmann RJ, Oakley B, Sidle RC, Sullivan K, Molina M. Characterizing relationships among fecal indicator bacteria, microbial source tracking markers, and associated waterborne pathogen occurrence in stream water and sediments in a mixed land use watershed. Water Research. 101: 498-509. PMID 27295624 DOI: 10.1016/J.Watres.2016.05.014 |
0.309 |
|
| 2016 |
Wong K, Shaw TI, Oladeinde A, Glenn TC, Oakley B, Molina M. Rapid Microbiome Changes in Freshly Deposited Cow Feces under Field Conditions. Frontiers in Microbiology. 7: 500. PMID 27148189 DOI: 10.3389/Fmicb.2016.00500 |
0.415 |
|
| 2016 |
Oakley BB, Kogut MH. Spatial and Temporal Changes in the Broiler Chicken Cecal and Fecal Microbiomes and Correlations of Bacterial Taxa with Cytokine Gene Expression. Frontiers in Veterinary Science. 3: 11. PMID 26925404 DOI: 10.3389/Fvets.2016.00011 |
0.35 |
|
| 2015 |
Meinersmann RJ, Bono JL, Lindsey RL, Genzlinger LL, Loparev VN, Oakley BB. Genome Sequence of a Urease-Positive Campylobacter lari Strain. Genome Announcements. 3. PMID 26472835 DOI: 10.1128/Genomea.01191-15 |
0.338 |
|
| 2015 |
Day JM, Oakley BB, Seal BS, Zsak L. Comparative analysis of the intestinal bacterial and RNA viral communities from sentinel birds placed on selected broiler chicken farms. Plos One. 10: e0117210. PMID 25635690 DOI: 10.1371/Journal.Pone.0117210 |
0.325 |
|
| 2015 |
Berrang ME, Cox NA, Meinersmann RJ, Oakley BB, Line JE. Detection of Campylobacter in 100 commercial flocks-evaluation of plating media and filtration method Journal of Applied Poultry Research. 24: 240-245. DOI: 10.3382/Japr/Pfv022 |
0.323 |
|
| 2014 |
Oakley BB, Lillehoj HS, Kogut MH, Kim WK, Maurer JJ, Pedroso A, Lee MD, Collett SR, Johnson TJ, Cox NA. The chicken gastrointestinal microbiome. Fems Microbiology Letters. 360: 100-12. PMID 25263745 DOI: 10.1111/1574-6968.12608 |
0.34 |
|
| 2014 |
Carbonero F, Oakley BB, Purdy KJ. Metabolic flexibility as a major predictor of spatial distribution in microbial communities. Plos One. 9: e85105. PMID 24465487 DOI: 10.1371/Journal.Pone.0085105 |
0.321 |
|
| 2013 |
Pedroso AA, Hurley-Bacon AL, Zedek AS, Kwan TW, Jordan AP, Avellaneda G, Hofacre CL, Oakley BB, Collett SR, Maurer JJ, Lee MD. Can probiotics improve the environmental microbiome and resistome of commercial poultry production? International Journal of Environmental Research and Public Health. 10: 4534-59. PMID 24071920 DOI: 10.3390/Ijerph10104534 |
0.371 |
|
| 2013 |
Pontiroli A, Khera TT, Oakley BB, Mason S, Dowd SE, Travis ER, Erenso G, Aseffa A, Courtenay O, Wellington EM. Prospecting environmental mycobacteria: combined molecular approaches reveal unprecedented diversity. Plos One. 8: e68648. PMID 23874704 DOI: 10.1371/Journal.Pone.0068648 |
0.401 |
|
| 2013 |
Meinersmann RJ, Lindsey RL, Bono JL, Smith TP, Oakley BB. Proposed model for the high rate of rearrangement and rapid migration observed in some IncA/C plasmid lineages. Applied and Environmental Microbiology. 79: 4806-14. PMID 23747695 DOI: 10.1128/Aem.01259-13 |
0.34 |
|
| 2013 |
Oakley BB, Morales CA, Line J, Berrang ME, Meinersmann RJ, Tillman GE, Wise MG, Siragusa GR, Hiett KL, Seal BS. The poultry-associated microbiome: network analysis and farm-to-fork characterizations. Plos One. 8: e57190. PMID 23468931 DOI: 10.1371/Journal.Pone.0057190 |
0.378 |
|
| 2013 |
Line JE, Oakley BB, Stern NJ. Comparison of cumulative drip sampling with whole carcass rinses for estimation of Campylobacter species and quality indicator organisms associated with processed broiler chickens. Poultry Science. 92: 218-24. PMID 23243251 DOI: 10.3382/Ps.2012-02217 |
0.338 |
|
| 2012 |
Simmons M, Morales CA, Oakley BB, Seal BS. Recombinant Expression of a Putative Amidase Cloned from the Genome of Listeria monocytogenes that Lyses the Bacterium and its Monolayer in Conjunction with a Protease. Probiotics and Antimicrobial Proteins. 4: 1-10. PMID 26781731 DOI: 10.1007/S12602-011-9084-5 |
0.355 |
|
| 2012 |
Volozhantsev NV, Oakley BB, Morales CA, Verevkin VV, Bannov VA, Krasilnikova VM, Popova AV, Zhilenkov EL, Garrish JK, Schegg KM, Woolsey R, Quilici DR, Line JE, Hiett KL, Siragusa GR, et al. Molecular characterization of podoviral bacteriophages virulent for Clostridium perfringens and their comparison with members of the Picovirinae. Plos One. 7: e38283. PMID 22666499 DOI: 10.1371/Journal.Pone.0038283 |
0.373 |
|
| 2012 |
Fuchsman CA, Staley JT, Oakley BB, Kirkpatrick JB, Murray JW. Free-living and aggregate-associated Planctomycetes in the Black Sea. Fems Microbiology Ecology. 80: 402-16. PMID 22251018 DOI: 10.1111/J.1574-6941.2012.01306.X |
0.337 |
|
| 2012 |
Oakley BB, Line JE, Berrang ME, Johnson JM, Buhr RJ, Cox NA, Hiett KL, Seal BS. Pyrosequencing-based validation of a simple cell-suspension polymerase chain reaction assay for Campylobacter with application of high-processivity polymerase and novel internal amplification controls for rapid and specific detection. Diagnostic Microbiology and Infectious Disease. 72: 131-8. PMID 22248734 DOI: 10.1016/J.Diagmicrobio.2011.11.001 |
0.344 |
|
| 2012 |
Morales CA, Oakley BB, Garrish JK, Siragusa GR, Ard MB, Seal BS. Complete genome sequence of the podoviral bacteriophage ΦCP24R, which is virulent for Clostridium perfringens. Archives of Virology. 157: 769-72. PMID 22218967 DOI: 10.1007/S00705-011-1218-2 |
0.328 |
|
| 2012 |
Carbonero F, Oakley BB, Hawkins RJ, Purdy KJ. Genotypic distribution of a specialist model microorganism, Methanosaeta, along an estuarine gradient: does metabolic restriction limit niche differentiation potential? Microbial Ecology. 63: 856-64. PMID 22183047 DOI: 10.1007/S00248-011-9993-6 |
0.316 |
|
| 2012 |
Oakley BB, Carbonero F, Dowd SE, Hawkins RJ, Purdy KJ. Contrasting patterns of niche partitioning between two anaerobic terminal oxidizers of organic matter. The Isme Journal. 6: 905-14. PMID 22113373 DOI: 10.1038/Ismej.2011.165 |
0.385 |
|
| 2012 |
Oakley BB, Morales CA, Line JE, Seal BS, Hiett KL. Application of high-throughput sequencing to measure the performance of commonly used selective cultivation methods for the foodborne pathogen Campylobacter. Fems Microbiology Ecology. 79: 327-36. PMID 22092388 DOI: 10.1111/J.1574-6941.2011.01219.X |
0.368 |
|
| 2011 |
Line JE, Stern NJ, Oakley BB, Seal BS. Comparison of an automated most-probable-number technique with traditional plating methods for estimating populations of total aerobes, coliforms, and Escherichia coli associated with freshly processed broiler chickens. Journal of Food Protection. 74: 1558-63. PMID 21902928 DOI: 10.4315/0362-028X.Jfp-11-024 |
0.307 |
|
| 2011 |
Zsak L, Day JM, Oakley BB, Seal BS. The complete genome sequence and genetic analysis of ΦCA82 a novel uncultured microphage from the turkey gastrointestinal system. Virology Journal. 8: 331. PMID 21714899 DOI: 10.1186/1743-422X-8-331 |
0.319 |
|
| 2011 |
Oakley BB, Talundzic E, Morales CA, Hiett KL, Siragusa GR, Volozhantsev NV, Seal BS. Comparative genomics of four closely related Clostridium perfringens bacteriophages reveals variable evolution among core genes with therapeutic potential. Bmc Genomics. 12: 282. PMID 21631945 DOI: 10.1186/1471-2164-12-282 |
0.345 |
|
| 2011 |
Tillman GE, Haas GJ, Wise MG, Oakley B, Smith MA, Siragusa GR. Chicken intestine microbiota following the administration of lupulone, a hop-based antimicrobial. Fems Microbiology Ecology. 77: 395-403. PMID 21517917 DOI: 10.1111/J.1574-6941.2011.01119.X |
0.352 |
|
| 2011 |
Calvo-Bado LA, Oakley BB, Dowd SE, Green LE, Medley GF, Ul-Hassan A, Bateman V, Gaze W, Witcomb L, Grogono-Thomas R, Kaler J, Russell CL, Wellington EM. Ovine pedomics: the first study of the ovine foot 16S rRNA-based microbiome. The Isme Journal. 5: 1426-37. PMID 21430786 DOI: 10.1038/Ismej.2011.25 |
0.335 |
|
| 2011 |
Oakley BB, Dowd SE, Purdy KJ. ThermoPhyl: a software tool for selecting phylogenetically optimized conventional and quantitative-PCR taxon-targeted assays for use with complex samples. Fems Microbiology Ecology. 77: 17-27. PMID 21366628 DOI: 10.1111/J.1574-6941.2011.01079.X |
0.321 |
|
| 2011 |
Volozhantsev NV, Verevkin VV, Bannov VA, Krasilnikova VM, Myakinina VP, Zhilenkov EL, Svetoch EA, Stern NJ, Oakley BB, Seal BS. The genome sequence and proteome of bacteriophage ΦCPV1 virulent for Clostridium perfringens. Virus Research. 155: 433-9. PMID 21144870 DOI: 10.1016/J.Virusres.2010.11.012 |
0.328 |
|
| 2010 |
Mori Y, Purdy KJ, Oakley BB, Kondo R. Comprehensive detection of phototrophic sulfur bacteria using PCR primers that target reverse dissimilatory sulfite reductase gene. Microbes and Environments / Jsme. 25: 190-6. PMID 21576872 DOI: 10.1264/Jsme2.Me10109 |
0.369 |
|
| 2010 |
Morris CE, Sands DC, Vanneste JL, Montarry J, Oakley B, Guilbaud C, Glaux C. Inferring the evolutionary history of the plant pathogen Pseudomonas syringae from its biogeography in headwaters of rivers in North America, Europe, and New Zealand. Mbio. 1. PMID 20802828 DOI: 10.1128/Mbio.00107-10 |
0.355 |
|
| 2010 |
Oakley BB, Carbonero F, van der Gast CJ, Hawkins RJ, Purdy KJ. Evolutionary divergence and biogeography of sympatric niche-differentiated bacterial populations. The Isme Journal. 4: 488-97. PMID 20054357 DOI: 10.1038/Ismej.2009.146 |
0.37 |
|
| 2010 |
Carbonero F, Oakley BB, Purdy KJ. Improving the isolation of anaerobes on solid media: the example of the fastidious Methanosaeta. Journal of Microbiological Methods. 80: 203-5. PMID 19969029 DOI: 10.1016/J.Mimet.2009.11.013 |
0.31 |
|
| 2010 |
Ma S, Concilio A, Oakley B, North M, Chen J. Spatial variability in microclimate in a mixed-conifer forest before and after thinning and burning treatments Forest Ecology and Management. 259: 904-915. DOI: 10.1016/J.Foreco.2009.11.030 |
0.303 |
|
| 2009 |
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology. 75: 7537-41. PMID 19801464 DOI: 10.1128/Aem.01541-09 |
0.322 |
|
| 2009 |
Doty SL, Oakley B, Xin G, Kang JW, Singleton G, Khan Z, Vajzovic A, Staley JT. Diazotrophic endophytes of native black cottonwood and willow Symbiosis. 47: 23-33. DOI: 10.1007/Bf03179967 |
0.385 |
|
| 2008 |
Oakley BB, Fiedler TL, Marrazzo JM, Fredricks DN. Diversity of human vaginal bacterial communities and associations with clinically defined bacterial vaginosis. Applied and Environmental Microbiology. 74: 4898-909. PMID 18487399 DOI: 10.1128/Aem.02884-07 |
0.391 |
|
| 2007 |
Fredricks DN, Fiedler TL, Thomas KK, Oakley BB, Marrazzo JM. Targeted PCR for detection of vaginal bacteria associated with bacterial vaginosis. Journal of Clinical Microbiology. 45: 3270-6. PMID 17687006 DOI: 10.1128/Jcm.01272-07 |
0.36 |
|
| 2007 |
Yee B, Lafi FF, Oakley B, Staley JT, Fuerst JA. A canonical FtsZ protein in Verrucomicrobium spinosum, a member of the Bacterial phylum Verrucomicrobia that also includes tubulin-producing Prosthecobacter species. Bmc Evolutionary Biology. 7: 37. PMID 17349062 DOI: 10.1186/1471-2148-7-37 |
0.325 |
|
| 2007 |
Oakley BB, Francis CA, Roberts KJ, Fuchsman CA, Srinivasan S, Staley JT. Analysis of nitrite reductase (nirK and nirS) genes and cultivation reveal depauperate community of denitrifying bacteria in the Black Sea suboxic zone. Environmental Microbiology. 9: 118-30. PMID 17227417 DOI: 10.1111/J.1462-2920.2006.01121.X |
0.384 |
|
| 2006 |
Kirkpatrick J, Oakley B, Fuchsman C, Srinivasan S, Staley JT, Murray JW. Diversity and distribution of Planctomycetes and related bacteria in the suboxic zone of the Black Sea. Applied and Environmental Microbiology. 72: 3079-83. PMID 16598025 DOI: 10.1128/Aem.72.4.3079-3083.2006 |
0.364 |
|
| 2006 |
Oakley BB, North MP, Franklin JF. Facilitative and competitive effects of a N-fixing shrub on white fir saplings Forest Ecology and Management. 233: 100-107. DOI: 10.1016/J.Foreco.2006.06.014 |
0.561 |
|
| 2005 |
Francis CA, Roberts KJ, Beman JM, Santoro AE, Oakley BB. Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proceedings of the National Academy of Sciences of the United States of America. 102: 14683-8. PMID 16186488 DOI: 10.1073/Pnas.0506625102 |
0.323 |
|
| 2005 |
North M, Oakley B, Fiegener R, Gray A, Barbour M. Influence of light and soil moisture on Sierran mixed-conifer understory communities Plant Ecology. 177: 13-24. DOI: 10.1007/S11258-005-2270-3 |
0.351 |
|
| 2004 |
Oakley B, North M, Franklin JF, Hedlund BP, Staley JT. Diversity and distribution of Frankia strains symbiotic with Ceanothus in California. Applied and Environmental Microbiology. 70: 6444-52. PMID 15528504 DOI: 10.1128/Aem.70.11.6444-6452.2004 |
0.582 |
|
| 2004 |
North M, Chen J, Oakley B, Song B, Rudnicki M, Gray A, Innes J. Forest stand structure and pattern of old-growth Western Hemlock/Douglas-Fir and mixed-conifer forests Forest Science. 50: 299-311. DOI: 10.1093/Forestscience/50.3.299 |
0.319 |
|
| 2003 |
Oakley BB, North MP, Franklin JF. The effects of fire on soil nitrogen associated with patches of the actinorhizal shrub Ceanothus cordulatus Plant and Soil. 254: 35-46. DOI: 10.1007/978-94-017-1601-7_5 |
0.548 |
|
| 1998 |
Oakley BB, Franklin JF. Bitter cherry (Prunus emarginata) distribution, successional dynamics, and implications for the role of the seed bank Canadian Journal of Botany. 76: 1725-1732. DOI: 10.1139/B98-162 |
0.542 |
|
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