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Hirsh Nanda, Ph.D. - Publications

Affiliations: 
2005 Johns Hopkins University, Baltimore, MD 
Area:
General Biophysics
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54 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Hoogerheide DP, Noskov SY, Kuszak AJ, Buchanan SK, Rostovtseva TK, Nanda H. Structure of voltage-dependent anion channel-tethered bilayer lipid membranes determined using neutron reflectivity. Acta Crystallographica. Section D, Structural Biology. 74: 1219-1232. PMID 30605136 DOI: 10.1107/S2059798318011749  0.564
2018 Nanda H, García Sakai V, Khodadadi S, Tyagi MS, Schwalbach EJ, Curtis JE. Relaxation dynamics of saturated and unsaturated oriented lipid bilayers. Soft Matter. PMID 29998268 DOI: 10.1039/C7Sm01720K  0.464
2017 Hoogerheide DP, Noskov SY, Jacobs D, Bergdoll L, Silin V, Worcester DL, Abramson J, Nanda H, Rostovtseva TK, Bezrukov SM. Structural features and lipid binding domain of tubulin on biomimetic mitochondrial membranes. Proceedings of the National Academy of Sciences of the United States of America. PMID 28420794 DOI: 10.1073/Pnas.1619806114  0.527
2017 Hoogerheide DP, Yu Noskov S, Jacobs D, Nanda H, Rostovtseva TK, Bezrukov SM. Tubulin on Biomimetic Mitochondrial Membranes: Structural Features and Lipid Discrimination Biophysical Journal. 112: 390a-391a. DOI: 10.1016/J.Bpj.2016.11.2121  0.54
2016 Barros M, Heinrich F, Datta SA, Rein A, Karageorgos I, Nanda H, Lösche M. Membrane Binding of HIV-1 MA Protein: Dependence on Bilayer Composition and Protein Lipidation. Journal of Virology. PMID 26912608 DOI: 10.1128/Jvi.02820-15  0.549
2016 Hoogerheide DP, Noskov S, Rostovtseva TK, Bezrukov SM, Nanda H. Orientation of Dimeric Tubulin on Lipid Membranes Studied using Neutron Reflectometry Biophysical Journal. 110: 575a. DOI: 10.1016/J.Bpj.2015.11.3076  0.545
2015 Heinrich F, Chakravarthy S, Nanda H, Papa A, Pandolfi PP, Ross AH, Harishchandra RK, Gericke A, Lösche M. The PTEN Tumor Suppressor Forms Homodimers in Solution. Structure (London, England : 1993). 23: 1952-7. PMID 26299948 DOI: 10.1016/J.Str.2015.07.012  0.375
2015 Dick RA, Datta SA, Nanda H, Fang X, Wen Y, Barros M, Wang YX, Rein A, Vogt VM. Hydrodynamic and membrane binding properties of purified Rous sarcoma virus Gag protein. Journal of Virology. PMID 26246573 DOI: 10.1128/Jvi.01628-15  0.511
2015 Scott DR, Silin V, Nanda H. Reconstitution of Functionalized Transmembrane Domains of Receptor Proteins into Biomimetic Membranes. Langmuir : the Acs Journal of Surfaces and Colloids. 31: 9115-24. PMID 26221793 DOI: 10.1021/Acs.Langmuir.5B01990  0.517
2015 Perevozchikova T, Nanda H, Nesta DP, Roberts CJ. Protein adsorption, desorption, and aggregation mediated by solid-liquid interfaces. Journal of Pharmaceutical Sciences. 104: 1946-59. PMID 25846460 DOI: 10.1002/Jps.24429  0.31
2015 Nanda H, Heinrich F, Lösche M. Membrane association of the PTEN tumor suppressor: neutron scattering and MD simulations reveal the structure of protein-membrane complexes. Methods (San Diego, Calif.). 77: 136-46. PMID 25461777 DOI: 10.1016/J.Ymeth.2014.10.014  0.527
2015 Scott DR, Silin V, Vanderah D, Marino JP, Krueger S, Nanda H. Activated Membrane Surfaces by Functionalized Peptides Biophysical Journal. 108: 632a-633a. DOI: 10.1016/J.Bpj.2014.11.3439  0.533
2015 Barros M, Dick RA, Datta SA, Vogt VM, Rein A, Lösche M, Nanda H. Structural Comparison of Membrane-Bound Retroviral Gag Proteins Biophysical Journal. 108: 559a. DOI: 10.1016/J.Bpj.2014.11.3065  0.506
2015 Hoogerheide DP, Teijido Hermida O, Rostovtseva TK, Bezrukov SM, Nanda H. Effect of Lipid Composition on the Affinity and Binding of Dimeric Tubulin to Membranes Studied using Surface Plasmon Resonance, Neutron Reflectivity, Electrophysiology, and AC Electrical Methods Biophysical Journal. 108: 557a. DOI: 10.1016/J.Bpj.2014.11.3053  0.546
2015 Treece BW, Lösche M, Nanda H. Resolving Membrane-Protein Complexes with Joint Neutron Reflectivity and Molecular Simulation Refinement Biophysical Journal. 108: 468a. DOI: 10.1016/J.Bpj.2014.11.2556  0.531
2015 Heinrich F, Nanda H, Chakravarthy S, Harishchandra RK, Gericke A, Ross AH, Lösche M. Dimerization of the PTEN Tumor Suppressor and its Structural Characterization by SAXS Biophysical Journal. 108: 40a. DOI: 10.1016/J.Bpj.2014.11.248  0.442
2015 Kent MS, Akgun B, Nanda H, Pirrone GF, Engen J. Combining Neutron Reflectivity and Hydrogen Deuterium Exchange Mass Spectrometry to Resolve Structural details of Membrane Associated Proteins Biophysical Journal. 108: 16a. DOI: 10.1016/J.Bpj.2014.11.112  0.559
2014 Heinrich F, Nanda H, Goh HZ, Bachert C, Lösche M, Linstedt AD. Myristoylation restricts orientation of the GRASP domain on membranes and promotes membrane tethering. The Journal of Biological Chemistry. 289: 9683-91. PMID 24505136 DOI: 10.1074/Jbc.M113.543561  0.553
2014 Curtis JE, Zhang H, Nanda H. SLDMOL: A tool for the structural characterization of thermally disordered membrane proteins Computer Physics Communications. 185: 3010-3015. DOI: 10.1016/J.Cpc.2014.07.006  0.43
2014 Hoogerheide DP, Vaish A, Rostovtseva T, Kuszak A, Bezrukov S, Krueger S, Nanda H. Towards the Incorporation of Functional Ion Channel Proteins in Tethered Membranes Biophysical Journal. 106: 746a. DOI: 10.1016/J.Bpj.2013.11.4108  0.54
2014 Scott DR, Velikovsky CA, Mariuzza RA, Marino JP, Krueger S, Nanda H. Biophysical Properties of Immune Receptor Proteins at the Membrane Interface Biophysical Journal. 106: 520a. DOI: 10.1016/J.Bpj.2013.11.2903  0.431
2014 Heinrich F, Nanda H, Goh HZ, Bachert C, Linstedt AD, Lösche M. Myristoylation Restricts Orientation of GRASP on Membranes and is Critical for Membrane Tethering Biophysical Journal. 106: 507a. DOI: 10.1016/J.Bpj.2013.11.2835  0.548
2013 Akgun B, Satija S, Nanda H, Pirrone GF, Shi X, Engen JR, Kent MS. Conformational transition of membrane-associated terminally acylated HIV-1 Nef. Structure (London, England : 1993). 21: 1822-33. PMID 24035710 DOI: 10.1016/J.Str.2013.08.008  0.522
2013 Kent MS, Akgun B, Satija S, Nanda H, Vernon BC, Shi X, Pirrone GF, Engen JR. The Conformation of Membrane-Associated HIV Nef and its Interactions with Hck Biophysical Journal. 104: 64a. DOI: 10.1016/J.Bpj.2012.11.391  0.55
2013 Barros M, Datta SAK, Rein A, Losche M, Nanda H. The Effect of Membrane Composition and Protein Lipidation on the Affinity and Structure of the HIV-1 MA Domain Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.390  0.57
2013 Barros MCDR, Datta SAK, Rein A, Losche M, Nanda H. Conformational Differences in Membrane Bound Retroviral Gag Proteins Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.389  0.529
2013 Nanda H, Shenoy SS, Loesche M. Membrane Association of the PTEN Tumor Suppressor: Reference Structure of a PIP Phosphatase on a Lipid Bilayer Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.2402  0.568
2013 Perevozchikova T, Nanda H, Jones RL, Roberts CJ. The Effect of Protein Desorption on Biotherapeutics Aggregation: Neutron Reflectivity Study Biophysical Journal. 104: 1-3. DOI: 10.1016/J.Bpj.2012.11.1032  0.346
2013 Nanda H. Resolving Membrane-Bound Protein Orientation and Conformation by Neutron Reflectivity Proteins in Solution and At Interfaces: Methods and Applications in Biotechnology and Materials Science. 99-111. DOI: 10.1002/9781118523063.ch5  0.46
2012 Curtis JE, McAuley A, Nanda H, Krueger S. Protein structure and interactions in the solid state studied by small-angle neutron scattering. Faraday Discussions. 158: 285-99; discussion 3. PMID 23234171 DOI: 10.1039/C2Fd20027A  0.323
2012 Shenoy SS, Nanda H, Lösche M. Membrane association of the PTEN tumor suppressor: electrostatic interaction with phosphatidylserine-containing bilayers and regulatory role of the C-terminal tail. Journal of Structural Biology. 180: 394-408. PMID 23073177 DOI: 10.1016/J.Jsb.2012.10.003  0.563
2012 Curtis JE, Nanda H, Khodadadi S, Cicerone M, Lee HJ, McAuley A, Krueger S. Small-angle neutron scattering study of protein crowding in liquid and solid phases: lysozyme in aqueous solution, frozen solution, and carbohydrate powders. The Journal of Physical Chemistry. B. 116: 9653-67. PMID 22823457 DOI: 10.1021/Jp304772D  0.33
2012 Weinrich M, Nanda H, Worcester DL, Majkrzak CF, Maranville BB, Bezrukov SM. Halothane changes the domain structure of a binary lipid membrane. Langmuir : the Acs Journal of Surfaces and Colloids. 28: 4723-8. PMID 22352350 DOI: 10.1021/La204317K  0.484
2012 Toppozini L, Armstrong CL, Barrett MA, Zheng S, Luo L, Nanda H, Sakai VG, Rheinstädter MC. Partitioning of ethanol into lipid membranes and its effect on fluidity and permeability as seen by X-ray and neutron scattering Soft Matter. 8: 11839-11849. DOI: 10.1039/C2Sm26546J  0.359
2012 Curtis JE, Raghunandan S, Nanda H, Krueger S. SASSIE: A program to study intrinsically disordered biological molecules and macromolecular ensembles using experimental scattering restraints Computer Physics Communications. 183: 382-389. DOI: 10.1016/J.Cpc.2011.09.010  0.342
2012 Shenoy S, Shekhar P, Heinrich F, Nanda H, Curtis J, King K, Gericke A, Ross A, Lösche M. Structure and Kinetics of PTEN Tumor Suppressor Association with Lipid Membranes Biophysical Journal. 102: 433a. DOI: 10.1016/J.Bpj.2011.11.2374  0.531
2012 Kent MS, Akgun B, Nanda H, Curtis JE, Satija S, Shi X, Engen JR. Conformational Change of HIV Nef upon Insertion into Lipid Membranes Resolved by Neutron Reflectivity Biophysical Journal. 102: 26a. DOI: 10.1016/J.Bpj.2011.11.166  0.56
2012 Nanda H, Weinrich M, Majkrzak CF, Maranville BB, Worcester DL, Bezrukov SM. Anesthetic Concentrations of Halothane Change the Domain Structure of Mixed Lipid Membranes Biophysical Journal. 102: 288a. DOI: 10.1016/J.Bpj.2011.11.1595  0.395
2011 Shekhar P, Nanda H, Lösche M, Heinrich F. Continuous distribution model for the investigation of complex molecular architectures near interfaces with scattering techniques. Journal of Applied Physics. 110: 102216-10221612. PMID 22207767 DOI: 10.1063/1.3661986  0.446
2011 Datta SA, Heinrich F, Raghunandan S, Krueger S, Curtis JE, Rein A, Nanda H. HIV-1 Gag extension: conformational changes require simultaneous interaction with membrane and nucleic acid. Journal of Molecular Biology. 406: 205-14. PMID 21134384 DOI: 10.1016/J.Jmb.2010.11.051  0.499
2011 Shenoy S, Shekhar P, Nanda H, Heinrich F, Ross AH, Loesche M. Structure of the PTEN Tumor Suppressor Associated with the Fluid Lipid Membranes Biophysical Journal. 100: 510a. DOI: 10.1016/J.Bpj.2010.12.2983  0.477
2011 Kent MS, Murton JK, Satija S, Akgun B, Nanda H, Curtis JE, Majewski J, Engen JR, Morgan CR. The Conformation and Activity of Membane-Bound HIV Nef Studied by Neutron Reflectivity Biophysical Journal. 100: 374a. DOI: 10.1016/J.Bpj.2010.12.2228  0.552
2010 Nanda H, Datta SA, Heinrich F, Lösche M, Rein A, Krueger S, Curtis JE. Electrostatic interactions and binding orientation of HIV-1 matrix studied by neutron reflectivity. Biophysical Journal. 99: 2516-24. PMID 20959092 DOI: 10.1016/J.Bpj.2010.07.062  0.56
2010 Kent MS, Murton JK, Sasaki DY, Satija S, Akgun B, Nanda H, Curtis JE, Majewski J, Morgan CR, Engen JR. Neutron reflectometry study of the conformation of HIV Nef bound to lipid membranes. Biophysical Journal. 99: 1940-8. PMID 20858440 DOI: 10.1016/J.Bpj.2010.07.016  0.561
2010 Nanda H. HIV-1 Matrix Binding to Model Membranes Investigated By Neutron Reflectivity: Electrostatics and Binding Orientation Biophysical Journal. 98: 48a. DOI: 10.1016/J.Bpj.2009.12.275  0.56
2010 Shekhar P, Heinrich F, Nanda H, Loesche M. Solid-Supported Bilayer Lipid Membranes from Lipid Mixtures: Structure and Composition Biophysical Journal. 98: 286. DOI: 10.1016/J.Bpj.2009.12.1559  0.518
2010 Kent MS, Murton JK, Satija S, Akgun B, Nanda H, Curtis J, Majewski J, Morgan C, Engen JR. A Study of the Conformation of HIV Nef Bound to Lipid Membranes by Neutron Reflectivity Biophysical Journal. 98: 233a. DOI: 10.1016/J.Bpj.2009.12.1259  0.56
2009 Heinrich F, Ng T, Vanderah DJ, Shekhar P, Mihailescu M, Nanda H, Lösche M. A new lipid anchor for sparsely tethered bilayer lipid membranes. Langmuir : the Acs Journal of Surfaces and Colloids. 25: 4219-29. PMID 19714901 DOI: 10.1021/La8033275  0.49
2009 Nanda H, Datta SAK, Heinrich F, Rein A, Susan K. Conformational Changes Of Gag HIV-1 On A Tethered Bilayer Measured By Neutron Reflectivity Provides Insights Into Viral Particle Assembly Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.2147  0.544
2006 Benz RW, Nanda H, Castro-Román F, White SH, Tobias DJ. Diffraction-based density restraints for membrane and membrane-peptide molecular dynamics simulations. Biophysical Journal. 91: 3617-29. PMID 16950837 DOI: 10.1529/Biophysj.106.084483  0.353
2005 Nanda H, Sachs JN, Petrache HI, Woolf TB. Environmental Effects on Glycophorin A Folding and Structure Examined through Molecular Simulations. Journal of Chemical Theory and Computation. 1: 375-88. PMID 26641504 DOI: 10.1021/Ct049928Y  0.614
2005 Nanda H, Lu N, Woolf TB. Using non-Gaussian density functional fits to improve relative free energy calculations. The Journal of Chemical Physics. 122: 134110. PMID 15847458 DOI: 10.1063/1.1877252  0.479
2005 Nanda H, Sachs JN, Petrache HI, Woolf TB. Environmental effects on glycophorin a folding and structure examined through molecular simulations Journal of Chemical Theory and Computation. 1: 375-388. DOI: 10.1021/ct049928y  0.487
2004 Sachs JN, Nanda H, Petrache HI, Woolf TB. Changes in phosphatidylcholine headgroup tilt and water order induced by monovalent salts: molecular dynamics simulations. Biophysical Journal. 86: 3772-82. PMID 15189873 DOI: 10.1529/Biophysj.103.035816  0.569
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