| Year |
Citation |
Score |
| 2020 |
Faigenbaum-Romm R, Reich A, Gatt YE, Barsheshet M, Argaman L, Margalit H. Hierarchy in Hfq Chaperon Occupancy of Small RNA Targets Plays a Major Role in Their Regulation. Cell Reports. 30: 3127-3138.e6. PMID 32130912 DOI: 10.1016/J.Celrep.2020.02.016 |
0.305 |
|
| 2018 |
Altuvia Y, Bar A, Reiss N, Karavani E, Argaman L, Margalit H. In vivo cleavage rules and target repertoire of RNase III in Escherichia coli. Nucleic Acids Research. PMID 30113670 DOI: 10.1093/Nar/Gky684 |
0.324 |
|
| 2018 |
Melamed S, Faigenbaum-Romm R, Peer A, Reiss N, Shechter O, Bar A, Altuvia Y, Argaman L, Margalit H. Mapping the small RNA interactome in bacteria using RIL-seq. Nature Protocols. 13: 1-33. PMID 29215635 DOI: 10.1038/Nprot.2017.115 |
0.344 |
|
| 2017 |
Malka Y, Steiman-Shimony A, Rosenthal E, Argaman L, Cohen-Daniel L, Arbib E, Margalit H, Kaplan T, Berger M. Post-transcriptional 3´-UTR cleavage of mRNA transcripts generates thousands of stable uncapped autonomous RNA fragments. Nature Communications. 8: 2029. PMID 29229900 DOI: 10.1038/S41467-017-02099-7 |
0.341 |
|
| 2017 |
Nitzan M, Rehani R, Margalit H. Integration of Bacterial Small RNAs in Regulatory Networks. Annual Review of Biophysics. 46: 131-148. PMID 28532217 DOI: 10.1146/Annurev-Biophys-070816-034058 |
0.348 |
|
| 2016 |
Melamed S, Peer A, Faigenbaum-Romm R, Gatt YE, Reiss N, Bar A, Altuvia Y, Argaman L, Margalit H. Global Mapping of Small RNA-Target Interactions in Bacteria. Molecular Cell. 63: 884-97. PMID 27588604 DOI: 10.1016/J.Molcel.2016.07.026 |
0.361 |
|
| 2015 |
Nitzan M, Shimoni Y, Rosolio O, Margalit H, Biham O. Stochastic analysis of bistability in coherent mixed feedback loops combining transcriptional and posttranscriptional regulations. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 91: 052706. PMID 26066198 DOI: 10.1103/Physreve.91.052706 |
0.309 |
|
| 2015 |
Nitzan M, Fechter P, Peer A, Altuvia Y, Bronesky D, Vandenesch F, Romby P, Biham O, Margalit H. A defense-offense multi-layered regulatory switch in a pathogenic bacterium. Nucleic Acids Research. 43: 1357-69. PMID 25628364 DOI: 10.1093/Nar/Gkv001 |
0.309 |
|
| 2014 |
Peer A, Margalit H. Evolutionary patterns of Escherichia coli small RNAs and their regulatory interactions. Rna (New York, N.Y.). 20: 994-1003. PMID 24865611 DOI: 10.1261/Rna.043133.113 |
0.37 |
|
| 2014 |
Nitzan M, Steiman-Shimony A, Altuvia Y, Biham O, Margalit H. Interactions between distant ceRNAs in regulatory networks. Biophysical Journal. 106: 2254-66. PMID 24853754 DOI: 10.1016/J.Bpj.2014.03.040 |
0.305 |
|
| 2013 |
Lioliou E, Sharma CM, Altuvia Y, Caldelari I, Romilly C, Helfer AC, Margalit H, Romby P. In vivo mapping of RNA-RNA interactions in Staphylococcus aureus using the endoribonuclease III. Methods (San Diego, Calif.). 63: 135-43. PMID 23851283 DOI: 10.1016/J.Ymeth.2013.06.033 |
0.307 |
|
| 2012 |
Habib N, Wapinski I, Margalit H, Regev A, Friedman N. A functional selection model explains evolutionary robustness despite plasticity in regulatory networks. Molecular Systems Biology. 8: 619. PMID 23089682 DOI: 10.1038/Msb.2012.50 |
0.343 |
|
| 2012 |
Itzhaki Z, Margalit H. Reduced polymorphism in domains involved in protein-protein interactions. Plos One. 7: e34503. PMID 22509312 DOI: 10.1371/Journal.Pone.0034503 |
0.343 |
|
| 2012 |
Juranek S, Eban T, Altuvia Y, Brown M, Morozov P, Tuschl T, Margalit H. A genome-wide view of the expression and processing patterns of Thermus thermophilus HB8 CRISPR RNAs. Rna (New York, N.Y.). 18: 783-94. PMID 22355165 DOI: 10.1261/Rna.031468.111 |
0.34 |
|
| 2012 |
Akiva E, Friedlander G, Itzhaki Z, Margalit H. A dynamic view of domain-motif interactions. Plos Computational Biology. 8: e1002341. PMID 22253583 DOI: 10.1371/Journal.Pcbi.1002341 |
0.308 |
|
| 2011 |
Botzman M, Margalit H. Variation in global codon usage bias among prokaryotic organisms is associated with their lifestyles. Genome Biology. 12: R109. PMID 22032172 DOI: 10.1186/Gb-2011-12-10-R109 |
0.302 |
|
| 2011 |
Rhind N, Chen Z, Yassour M, Thompson DA, Haas BJ, Habib N, Wapinski I, Roy S, Lin MF, Heiman DI, Young SK, Furuya K, Guo Y, Pidoux A, Chen HM, ... ... Margalit H, et al. Comparative functional genomics of the fission yeasts. Science (New York, N.Y.). 332: 930-6. PMID 21511999 DOI: 10.1126/Science.1203357 |
0.312 |
|
| 2011 |
Peer A, Margalit H. Accessibility and evolutionary conservation mark bacterial small-rna target-binding regions. Journal of Bacteriology. 193: 1690-701. PMID 21278294 DOI: 10.1128/Jb.01419-10 |
0.325 |
|
| 2010 |
Itzhaki Z, Akiva E, Margalit H. Preferential use of protein domain pairs as interaction mediators: order and transitivity. Bioinformatics (Oxford, England). 26: 2564-70. PMID 20802208 DOI: 10.1093/Bioinformatics/Btq495 |
0.311 |
|
| 2010 |
Jaimovich A, Rinott R, Schuldiner M, Margalit H, Friedman N. Modularity and directionality in genetic interaction maps. Bioinformatics (Oxford, England). 26: i228-36. PMID 20529911 DOI: 10.1093/Bioinformatics/Btq197 |
0.304 |
|
| 2010 |
Faucher SP, Friedlander G, Livny J, Margalit H, Shuman HA. Legionella pneumophila 6S RNA optimizes intracellular multiplication Proceedings of the National Academy of Sciences of the United States of America. 107: 7533-7538. PMID 20368425 DOI: 10.1073/Pnas.0911764107 |
0.312 |
|
| 2009 |
Shimoni Y, Altuvia S, Margalit H, Biham O. Stochastic analysis of the SOS response in Escherichia coli. Plos One. 4: e5363. PMID 19424504 DOI: 10.1371/Journal.Pone.0005363 |
0.335 |
|
| 2008 |
Akiva E, Itzhaki Z, Margalit H. Built-in loops allow versatility in domain-domain interactions: lessons from self-interacting domains. Proceedings of the National Academy of Sciences of the United States of America. 105: 13292-7. PMID 18757736 DOI: 10.1073/Pnas.0801207105 |
0.341 |
|
| 2008 |
Habib N, Kaplan T, Margalit H, Friedman N. A novel Bayesian DNA motif comparison method for clustering and retrieval. Plos Computational Biology. 4: e1000010. PMID 18463706 DOI: 10.1371/Journal.Pcbi.1000010 |
0.32 |
|
| 2008 |
Padalon-Brauch G, Hershberg R, Elgrably-Weiss M, Baruch K, Rosenshine I, Margalit H, Altuvia S. Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence. Nucleic Acids Research. 36: 1913-27. PMID 18267966 DOI: 10.1093/Nar/Gkn050 |
0.31 |
|
| 2007 |
Shimoni Y, Friedlander G, Hetzroni G, Niv G, Altuvia S, Biham O, Margalit H. Regulation of gene expression by small non-coding RNAs: a quantitative view. Molecular Systems Biology. 3: 138. PMID 17893699 DOI: 10.1038/Msb4100181 |
0.386 |
|
| 2007 |
Margalit H. Regulation Of Gene Expression By Small Non-Coding Rnas Genome Informatics. 19: 195-195. DOI: 10.11234/Gi1990.19.195 |
0.36 |
|
| 2006 |
Sprinzak E, Altuvia Y, Margalit H. Characterization and prediction of protein-protein interactions within and between complexes. Proceedings of the National Academy of Sciences of the United States of America. 103: 14718-23. PMID 17003128 DOI: 10.1073/Pnas.0603352103 |
0.354 |
|
| 2006 |
Hershberg R, Margalit H. Co-evolution of transcription factors and their targets depends on mode of regulation. Genome Biology. 7: R62. PMID 16859509 DOI: 10.1186/Gb-2006-7-7-R62 |
0.315 |
|
| 2006 |
Jaimovich A, Elidan G, Margalit H, Friedman N. Towards an integrated protein-protein interaction network: a relational Markov network approach. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 145-64. PMID 16597232 DOI: 10.1089/Cmb.2006.13.145 |
0.376 |
|
| 2006 |
Ofran Y, Margalit H. Proteins of the same fold and unrelated sequences have similar amino acid composition. Proteins. 64: 275-9. PMID 16565950 DOI: 10.1002/Prot.20964 |
0.328 |
|
| 2005 |
Kaplan T, Friedman N, Margalit H. Ab initio prediction of transcription factor targets using structural knowledge. Plos Computational Biology. 1: e1. PMID 16103898 DOI: 10.1371/Journal.Pcbi.0010001 |
0.365 |
|
| 2005 |
Zick A, Onn I, Bezalel R, Margalit H, Shlomai J. Assigning functions to genes: identification of S-phase expressed genes in Leishmania major based on post-transcriptional control elements. Nucleic Acids Research. 33: 4235-42. PMID 16052032 DOI: 10.1093/Nar/Gki742 |
0.323 |
|
| 2005 |
Hershberg R, Yeger-Lotem E, Margalit H. Chromosomal organization is shaped by the transcription regulatory network. Trends in Genetics : Tig. 21: 138-42. PMID 15734572 DOI: 10.1016/J.Tig.2005.01.003 |
0.656 |
|
| 2005 |
Lithwick G, Margalit H. Relative predicted protein levels of functionally associated proteins are conserved across organisms. Nucleic Acids Research. 33: 1051-7. PMID 15718304 DOI: 10.1093/Nar/Gki261 |
0.339 |
|
| 2004 |
Altuvia Y, Margalit H. A structure-based approach for prediction of MHC-binding peptides. Methods (San Diego, Calif.). 34: 454-9. PMID 15542371 DOI: 10.1016/J.Ymeth.2004.06.008 |
0.395 |
|
| 2004 |
Yeger-Lotem E, Sattath S, Kashtan N, Itzkovitz S, Milo R, Pinter RY, Alon U, Margalit H. Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction. Proceedings of the National Academy of Sciences of the United States of America. 101: 5934-9. PMID 15079056 DOI: 10.1073/Pnas.0306752101 |
0.738 |
|
| 2004 |
Hermjakob H, Montecchi-Palazzi L, Lewington C, Mudali S, Kerrien S, Orchard S, Vingron M, Roechert B, Roepstorff P, Valencia A, Margalit H, Armstrong J, Bairoch A, Cesareni G, Sherman D, et al. IntAct: an open source molecular interaction database. Nucleic Acids Research. 32: D452-5. PMID 14681455 DOI: 10.1093/Nar/Gkh052 |
0.337 |
|
| 2003 |
Margalit H, Altuvia Y. Insights from MHC-bound peptides. Novartis Foundation Symposium. 254: 77-90; discussion 91. PMID 14712933 DOI: 10.1002/0470090766.Ch6 |
0.388 |
|
| 2003 |
Lithwick G, Margalit H. Hierarchy of sequence-dependent features associated with prokaryotic translation. Genome Research. 13: 2665-73. PMID 14656971 DOI: 10.1101/Gr.1485203 |
0.355 |
|
| 2003 |
Yeger-Lotem E, Margalit H. Detection of regulatory circuits by integrating the cellular networks of protein-protein interactions and transcription regulation. Nucleic Acids Research. 31: 6053-61. PMID 14530453 DOI: 10.1093/Nar/Gkg787 |
0.695 |
|
| 2003 |
Sprinzak E, Sattath S, Margalit H. How reliable are experimental protein-protein interaction data? Journal of Molecular Biology. 327: 919-23. PMID 12662919 DOI: 10.1016/S0022-2836(03)00239-0 |
0.367 |
|
| 2003 |
Miriami E, Margalit H, Sperling R. Conserved sequence elements associated with exon skipping. Nucleic Acids Research. 31: 1974-83. PMID 12655015 DOI: 10.1093/Nar/Gkg279 |
0.362 |
|
| 2003 |
Hershberg R, Altuvia S, Margalit H. A survey of small RNA-encoding genes in Escherichia coli. Nucleic Acids Research. 31: 1813-20. PMID 12654996 DOI: 10.1093/Nar/Gkg297 |
0.318 |
|
| 2002 |
Friedberg I, Margalit H. Persistently conserved positions in structurally similar, sequence dissimilar proteins: Roles in preserving protein fold and function Protein Science. 11: 350-360. PMID 11790845 DOI: 10.1110/Ps.18602 |
0.378 |
|
| 2002 |
Altuvia Y, Lithwick G, Margalit H. Harnessing the cellular immune system to the gene-prediction cart. Trends in Genetics : Tig. 17: 732-4. PMID 11718928 DOI: 10.1016/S0168-9525(01)02496-9 |
0.377 |
|
| 2001 |
Schueler-Furman O, Altuvia Y, Margalit H. Examination of possible structural constraints of MHC-binding peptides by assessment of their native structure within their source proteins. Proteins. 45: 47-54. PMID 11536359 DOI: 10.1002/Prot.1122 |
0.372 |
|
| 2001 |
Sprinzak E, Margalit H. Correlated sequence-signatures as markers of protein-protein interaction. Journal of Molecular Biology. 311: 681-92. PMID 11518523 DOI: 10.1006/Jmbi.2001.4920 |
0.393 |
|
| 2001 |
Argaman L, Hershberg R, Vogel J, Bejerano G, Wagner EG, Margalit H, Altuvia S. Novel small RNA-encoding genes in the intergenic regions of Escherichia coli. Current Biology : Cb. 11: 941-50. PMID 11448770 DOI: 10.1016/S0960-9822(01)00270-6 |
0.313 |
|
| 2001 |
Hershberg R, Bejerano G, Santos-Zavaleta A, Margalit H. PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites. Nucleic Acids Research. 29: 277. PMID 11125111 DOI: 10.1093/Nar/29.1.277 |
0.309 |
|
| 2000 |
Friedberg I, Kaplan T, Margalit H. Evaluation of PSI-BLAST alignment accuracy in comparison to structural alignments Protein Science. 9: 2278-2284. PMID 11152139 DOI: 10.1110/Ps.9.11.2278 |
0.335 |
|
| 2000 |
Schueler-Furman O, Altuvia Y, Sette A, Margalit H. Structure-based prediction of binding peptides to MHC class I molecules: application to a broad range of MHC alleles. Protein Science : a Publication of the Protein Society. 9: 1838-46. PMID 11045629 DOI: 10.1110/Ps.9.9.1838 |
0.392 |
|
| 2000 |
Altuvia Y, Margalit H. Sequence signals for generation of antigenic peptides by the proteasome: implications for proteasomal cleavage mechanism. Journal of Molecular Biology. 295: 879-90. PMID 10656797 DOI: 10.1006/Jmbi.1999.3392 |
0.361 |
|
| 1998 |
Schueler-Furman O, Elber R, Margalit H. Knowledge-based structure prediction of MHC class I bound peptides: a study of 23 complexes. Folding & Design. 3: 549-64. PMID 9889166 DOI: 10.1016/S1359-0278(98)00070-4 |
0.374 |
|
| 1998 |
Mandel-Gutfreund Y, Margalit H. Quantitative parameters for amino acid-base interaction: implications for prediction of protein-DNA binding sites. Nucleic Acids Research. 26: 2306-12. PMID 9580679 DOI: 10.1093/Nar/26.10.2306 |
0.345 |
|
| 1998 |
Altuvia Y, Sette A, Sidney J, Southwood S, Margalit H. A structure-based algorithm to predict potential binding peptides to MHC molecules with hydrophobic binding pockets. Human Immunology. 58: 1-11. PMID 9438204 DOI: 10.1016/S0198-8859(97)00210-3 |
0.371 |
|
| 1997 |
Calb R, Davidovitch A, Koby S, Giladi H, Goldenberg D, Margalit H, Holtel A, Timmis K, Sanchez-Romero JM, de Lorenzo V, Oppenheim AB. Structure and function of the Pseudomonas putida integration host factor. Journal of Bacteriology. 178: 6319-26. PMID 8892836 DOI: 10.1128/Jb.178.21.6319-6326.1996 |
0.319 |
|
| 1996 |
Nadir E, Margalit H, Gallily T, Ben-Sasson SA. Microsatellite spreading in the human genome: evolutionary mechanisms and structural implications. Proceedings of the National Academy of Sciences of the United States of America. 93: 6470-5. PMID 8692839 DOI: 10.1073/Pnas.93.13.6470 |
0.313 |
|
| 1996 |
Fraenkel YM, Mandel Y, Friedberg D, Margalit H. Identification of common motifs in unaligned DNA sequences: application to Escherichia coli Lrp regulon. Computer Applications in the Biosciences : Cabios. 11: 379-87. PMID 8521047 DOI: 10.1093/Bioinformatics/11.4.379 |
0.367 |
|
| 1995 |
Schueler O, Margalit H. Conservation of salt bridges in protein families. Journal of Molecular Biology. 248: 125-35. PMID 7731038 DOI: 10.1006/Jmbi.1995.0206 |
0.355 |
|
| 1995 |
Cornette JL, Margalit H, Berzofsky JA, Delisi C. Periodic variation in side-chain polarities of T-cell antigenic peptides correlates with their structure and activity Proceedings of the National Academy of Sciences of the United States of America. 92: 8368-8372. PMID 7667297 DOI: 10.1073/Pnas.92.18.8368 |
0.567 |
|
| 1995 |
Altuvia Y, Schueler O, Margalit H. Ranking potential binding peptides to MHC molecules by a computational threading approach. Journal of Molecular Biology. 249: 244-50. PMID 7540211 DOI: 10.1006/Jmbi.1995.0293 |
0.386 |
|
| 1994 |
Altuvia Y, Berzofsky JA, Rosenfeld R, Margalit H. Sequence features that correlate with MHC restriction. Molecular Immunology. 31: 1-19. PMID 8302295 DOI: 10.1016/0161-5890(94)90133-3 |
0.386 |
|
| 1994 |
Rosenfeld R, Margalit H. Zinc fingers: conserved properties that can distinguish between spurious and actual DNA-binding motifs. Journal of Biomolecular Structure & Dynamics. 11: 557-70. PMID 8129873 DOI: 10.1080/07391102.1993.10508015 |
0.322 |
|
| 1994 |
Lisser S, Margalit H. Determination of common structural features in Escherichia coli promoters by computer analysis. European Journal of Biochemistry. 223: 823-30. PMID 8055959 DOI: 10.1111/J.1432-1033.1994.Tb19058.X |
0.359 |
|
| 1993 |
Lisser S, Margalit H. Compilation of E. coli mRNA promoter sequences. Nucleic Acids Research. 21: 1507-16. PMID 8479900 DOI: 10.1093/Nar/21.7.1507 |
0.306 |
|
| 1993 |
Schurr T, Nadir E, Margalit H. Identification and characterization of E.coli ribosomal binding sites by free energy computation. Nucleic Acids Research. 21: 4019-23. PMID 7690472 DOI: 10.1093/Nar/21.17.4019 |
0.31 |
|
| 1990 |
Vajda S, Kataoka R, DeLisi C, Margalit H, Berzofsky JA, Cornette JL. Molecular structure and vaccine design Annual Review of Biophysics and Biophysical Chemistry. 19: 69-82. PMID 1694668 DOI: 10.1146/annurev.bb.19.060190.000441 |
0.594 |
|
| 1990 |
Kotake S, Wiggert B, Redmond TM, Borst DE, Nickerson JM, Margalit H, Berzofsky JA, Chader GJ, Gery I. Repeated determinants within the retinal interphotoreceptor retinoid-binding protein (IRBP): immunological properties of the repeats of an immunodominant determinant. Cellular Immunology. 126: 331-42. PMID 1690082 DOI: 10.1016/0008-8749(90)90325-L |
0.363 |
|
| 1989 |
Hale PM, Cease KB, Houghten RA, Ouyang C, Putney S, Javaherian K, Margalit H, Cornette JL, Spouge JL, Delisi C, Berzofsky1 JA. T cell multideterminant regions in the human immunodeficiency virus envelope: Toward overcoming the problem of major histocompatibility complex restriction International Immunology. 1: 409-415. PMID 2484961 DOI: 10.1093/Intimm/1.4.409 |
0.69 |
|
| 1989 |
Cornette JL, Margalit H, DeLisi C, Berzofsky JA. Identification of T-cell epitopes and use in construction of synthetic vaccines Methods in Enzymology. 178: 611-634. PMID 2481216 DOI: 10.1016/0076-6879(89)78042-3 |
0.556 |
|
| 1989 |
Redmond TM, Sanui H, Hu LH, Wiggert B, Margalit H, Berzofsky JA, Chader GJ, Gery I. Immune responses to peptides derived from the retinal protein IRBP: immunopathogenic determinants are not necessarily immunodominant. Clinical Immunology and Immunopathology. 53: 212-24. PMID 2477180 DOI: 10.1016/0090-1229(89)90051-2 |
0.31 |
|
| 1989 |
Sanui H, Redmond TM, Kotake S, Wiggert B, Hu LH, Margalit H, Berzofsky JA, Chader GJ, Gery I. Identification of an immunodominant and highly immunopathogenic determinant in the retinal interphotoreceptor retinoid-binding protein (IRBP). The Journal of Experimental Medicine. 169: 1947-60. PMID 2471769 DOI: 10.1084/Jem.169.6.1947 |
0.342 |
|
| 1987 |
Cornette JL, Cease KB, Margalit H, Spouge JL, Berzofsky JA, DeLisi C. Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins Journal of Molecular Biology. 195: 659-685. PMID 3656427 DOI: 10.1016/0022-2836(87)90189-6 |
0.657 |
|
| 1987 |
Berzofsky JA, Cornette J, Margalit H, Berkower I, Cease K, DeLisi C. Molecular features of class II MHC-restricted T-cell recognition of protein and peptide antigens: the importance of amphipathic structures. Current Topics in Microbiology and Immunology. 130: 13-24. PMID 3536326 DOI: 10.1007/978-3-642-71440-5_2 |
0.572 |
|
| 1987 |
Berzofsky JA, Cease KB, Cornette JL, Spouge JL, Margalit H, Berkower IJ, Good MF, Miller LH, DeLisi C. Protein antigenic structures recognized by T cells: potential applications to vaccine design. Immunological Reviews. 98: 9-52. PMID 2443443 DOI: 10.1111/J.1600-065X.1987.Tb00518.X |
0.705 |
|
| 1987 |
Cease KB, Margalit H, Cornette JL, Putney SD, Robey WG, Ouyang C, Streicher HZ, Fischinger PJ, Gallo RC, DeLisi C. Helper T-cell antigenic site identification in the acquired immunodeficiency syndrome virus gp120 envelope protein and induction of immunity in mice to the native protein using a 16-residue synthetic peptide Proceedings of the National Academy of Sciences of the United States of America. 84: 4249-4253. PMID 2438696 DOI: 10.1073/Pnas.84.12.4249 |
0.573 |
|
| 1987 |
Good MF, Maloy WL, Lunde MN, Margalit H, Cornette JL, Smith GL, Moss B, Miller LH, Berzofsky JA. Construction of synthetic immunogen: use of new T-helper epitope on malaria circumsporozoite protein. Science (New York, N.Y.). 235: 1059-62. PMID 2434994 DOI: 10.1126/Science.2434994 |
0.37 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 1995 |
Mandel-Gutfreund Y, Schueler O, Margalit H. Comprehensive analysis of hydrogen bonds in regulatory protein DNA-complexes: in search of common principles. Journal of Molecular Biology. 253: 370-82. PMID 7563096 DOI: 10.1006/Jmbi.1995.0559 |
0.3 |
|
| 2002 |
Friedberg I, Margalit H. PeCoP: Automatic determination of persistently conserved positions in protein families Bioinformatics. 18: 1276-1277. PMID 12217925 DOI: 10.1093/Bioinformatics/18.9.1276 |
0.3 |
|
| 2003 |
Zlotorynski E, Rahat A, Skaug J, Ben-Porat N, Ozeri E, Hershberg R, Levi A, Scherer SW, Margalit H, Kerem B. Molecular basis for expression of common and rare fragile sites. Molecular and Cellular Biology. 23: 7143-51. PMID 14517285 DOI: 10.1128/Mcb.23.20.7143-7151.2003 |
0.299 |
|
| 2012 |
Wald N, Alroy M, Botzman M, Margalit H. Codon usage bias in prokaryotic pyrimidine-ending codons is associated with the degeneracy of the encoded amino acids. Nucleic Acids Research. 40: 7074-83. PMID 22581775 DOI: 10.1093/Nar/Gks348 |
0.298 |
|
| 2014 |
Nitzan M, Wassarman KM, Biham O, Margalit H. Global regulation of transcription by a small RNA: a quantitative view. Biophysical Journal. 106: 1205-14. PMID 24606944 DOI: 10.1016/J.Bpj.2014.01.025 |
0.296 |
|
| 2006 |
Itzhaki Z, Akiva E, Altuvia Y, Margalit H. Evolutionary conservation of domain-domain interactions. Genome Biology. 7: R125. PMID 17184549 DOI: 10.1186/Gb-2006-7-12-R125 |
0.295 |
|
| 1998 |
Mishmar D, Rahat A, Scherer SW, Nyakatura G, Hinzmann B, Kohwi Y, Mandel-Gutfroind Y, Lee JR, Drescher B, Sas DE, Margalit H, Platzer M, Weiss A, Tsui LC, Rosenthal A, et al. Molecular characterization of a common fragile site (FRA7H) on human chromosome 7 by the cloning of a simian virus 40 integration site. Proceedings of the National Academy of Sciences of the United States of America. 95: 8141-6. PMID 9653154 DOI: 10.1073/Pnas.95.14.8141 |
0.295 |
|
| 1988 |
Margalit H, Shapiro BA, Nussinov R, Owens J, Jernigan RL. Helix stability in prokaryotic promoter regions. Biochemistry. 27: 5179-88. PMID 3167040 DOI: 10.1021/Bi00414A035 |
0.295 |
|
| 1988 |
Sanui H, Redmond TM, Hu LH, Kuwabara T, Margalit H, Cornette JL, Wiggert B, Chader GJ, Gery I. Synthetic peptides derived from IRBP induce EAU and EAP in lewis rats Current Eye Research. 7: 727-735. PMID 3262040 DOI: 10.3109/02713688809033202 |
0.289 |
|
| 2012 |
Loinger A, Shemla Y, Simon I, Margalit H, Biham O. Competition between small RNAs: a quantitative view. Biophysical Journal. 102: 1712-21. PMID 22768926 DOI: 10.1016/J.Bpj.2012.01.058 |
0.287 |
|
| 2015 |
Sajman J, Zenvirth D, Nitzan M, Margalit H, Simpson-Lavy KJ, Reiss Y, Cohen I, Ravid T, Brandeis M. Degradation of Ndd1 by APC/C(Cdh1) generates a feed forward loop that times mitotic protein accumulation. Nature Communications. 6: 7075. PMID 25959309 DOI: 10.1038/Ncomms8075 |
0.286 |
|
| 2015 |
Nitzan M, Mintzer S, Margalit H. Approaches and developments in studying the human microbiome network Israel Journal of Ecology and Evolution. 61: 90-94. DOI: 10.1080/15659801.2015.1042768 |
0.284 |
|
| 1989 |
Margalit H, Shapiro BA, Oppenheim AB, Maizel JV. Detection of common motifs in RNA secondary structures. Nucleic Acids Research. 17: 4829-45. PMID 2473442 DOI: 10.1093/Nar/17.12.4829 |
0.277 |
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| 2011 |
Elefant N, Berger A, Shein H, Hofree M, Margalit H, Altuvia Y. RepTar: a database of predicted cellular targets of host and viral miRNAs. Nucleic Acids Research. 39: D188-94. PMID 21149264 DOI: 10.1093/Nar/Gkq1233 |
0.276 |
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| 2014 |
Wald N, Margalit H. Auxiliary tRNAs: large-scale analysis of tRNA genes reveals patterns of tRNA repertoire dynamics. Nucleic Acids Research. 42: 6552-66. PMID 24782525 DOI: 10.1093/Nar/Gku245 |
0.275 |
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| 1998 |
Mandel-Gutfreund Y, Margalit H, Jernigan RL, Zhurkin VB. A role for CH...O interactions in protein-DNA recognition. Journal of Molecular Biology. 277: 1129-40. PMID 9571027 DOI: 10.1006/Jmbi.1998.1660 |
0.274 |
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| 2019 |
Bhattacharya S, Baidya AK, Pal RR, Mamou G, Gatt YE, Margalit H, Rosenshine I, Ben-Yehuda S. A Ubiquitous Platform for Bacterial Nanotube Biogenesis. Cell Reports. PMID 30929979 DOI: 10.1016/J.Celrep.2019.02.055 |
0.269 |
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| 2018 |
Steiman-Shimony A, Shtrikman O, Margalit H. Assessing the functional association of intronic miRNAs with their host genes. Rna (New York, N.Y.). PMID 29752351 DOI: 10.1261/Rna.064386.117 |
0.267 |
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| 2010 |
Dölken L, Krmpotic A, Kothe S, Tuddenham L, Tanguy M, Marcinowski L, Ruzsics Z, Elefant N, Altuvia Y, Margalit H, Koszinowski UH, Jonjic S, Pfeffer S. Cytomegalovirus microRNAs facilitate persistent virus infection in salivary glands. Plos Pathogens. 6: e1001150. PMID 20976200 DOI: 10.1371/Journal.Ppat.1001150 |
0.266 |
|
| 1994 |
Margalit H, Nadir E, Ben-Sasson SA. A complete Alu element within the coding sequence of a central gene. Cell. 78: 173-4. PMID 8044835 DOI: 10.1016/0092-8674(94)90287-9 |
0.262 |
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| 2007 |
Stern-Ginossar N, Elefant N, Zimmermann A, Wolf DG, Saleh N, Biton M, Horwitz E, Prokocimer Z, Prichard M, Hahn G, Goldman-Wohl D, Greenfield C, Yagel S, Hengel H, Altuvia Y, ... Margalit H, et al. Host immune system gene targeting by a viral miRNA. Science (New York, N.Y.). 317: 376-81. PMID 17641203 DOI: 10.1126/Science.1140956 |
0.262 |
|
| 1987 |
Margalit H, Grover NB. Initiation of chromosome replication in bacteria: analysis of an inhibitor control model. Journal of Bacteriology. 169: 5231-40. PMID 3667530 DOI: 10.1128/Jb.169.11.5231-5240.1987 |
0.261 |
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| 2011 |
Elefant N, Altuvia Y, Margalit H. A wide repertoire of miRNA binding sites: prediction and functional implications. Bioinformatics (Oxford, England). 27: 3093-101. PMID 21953484 DOI: 10.1093/Bioinformatics/Btr534 |
0.26 |
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| 2001 |
Mandel-Gutfreund Y, Baron A, Margalit H. A structure-based approach for prediction of protein binding sites in gene upstream regions. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 139-50. PMID 11262935 DOI: 10.1142/9789814447362_0015 |
0.259 |
|
| 1993 |
Roitberg-Tambur A, Friedmann A, Safirman C, Markitziu A, Ben-Chetrit E, Rubinow A, Moutsopoulos HM, Stavropoulos E, Skopouli FN, Margalit H. Molecular analysis of HLA class II genes in primary Sjögren's syndrome. A study of Israeli Jewish and Greek non-Jewish patients. Human Immunology. 36: 235-42. PMID 8340232 DOI: 10.1016/0198-8859(93)90130-S |
0.254 |
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| 2005 |
Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H. Clustering and conservation patterns of human microRNAs. Nucleic Acids Research. 33: 2697-706. PMID 15891114 DOI: 10.1093/Nar/Gki567 |
0.25 |
|
| 2012 |
Akiva E, Friedlander G, Itzhaki Z, Margalit H. Correction: A Dynamic View of Domain-Motif Interactions Plos Computational Biology. 8. DOI: 10.1371/Annotation/2E21B1B9-46De-4Cbe-A2A4-B4598D90D492 |
0.23 |
|
| 2011 |
Habib N, Kaplan T, Margalit H, Friedman N. Correction: A Novel Bayesian DNA Motif Comparison Method for Clustering and Retrieval Plos Computational Biology. 7. DOI: 10.1371/Annotation/D876137B-59C5-48Cf-8491-C8Cf12F26A9B |
0.226 |
|
| 2023 |
Bar A, Argaman L, Eldar M, Margalit H. TRS: a method for determining transcript termini from RNAtag-seq sequencing data. Nature Communications. 14: 7843. PMID 38030608 DOI: 10.1038/s41467-023-43534-2 |
0.219 |
|
| 2021 |
Bar A, Argaman L, Altuvia Y, Margalit H. Prediction of Novel Bacterial Small RNAs From RIL-Seq RNA-RNA Interaction Data. Frontiers in Microbiology. 12: 635070. PMID 34093460 DOI: 10.3389/fmicb.2021.635070 |
0.21 |
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| 2001 |
Bejerano G, Seldin Y, Margalit H, Tishby N. Markovian domain fingerprinting: statistical segmentation of protein sequences. Bioinformatics (Oxford, England). 17: 927-34. PMID 11673237 |
0.209 |
|
| 1999 |
Mishmar D, Mandel-Gutfreund Y, Margalit H, Rahat A, Kerem B. Common fragile sites: G-band characteristics within an R-band. American Journal of Human Genetics. 64: 908-910. PMID 10053029 DOI: 10.1086/302299 |
0.189 |
|
| 1985 |
Margalit H, Rosenberger RF, Grover NB. Initiation of DNA replication in bacteria: analysis of an autorepressor control model. Journal of Theoretical Biology. 111: 183-99. PMID 6392751 DOI: 10.1016/S0022-5193(84)80204-0 |
0.188 |
|
| 2022 |
Barsheshet M, Fisher S, Margalit H. Inferring the contribution of small RNAs to changes in gene expression in response to stress. Nar Genomics and Bioinformatics. 4: lqac015. PMID 35261974 DOI: 10.1093/nargab/lqac015 |
0.178 |
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| 2023 |
Gatt YE, Savion D, Bamberger T, Margalit H. Convergent Within-Host Adaptation of Pseudomonas aeruginosa through the Transcriptional Regulatory Network. Msystems. 8: e0002423. PMID 36975785 DOI: 10.1128/msystems.00024-23 |
0.167 |
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| 1992 |
Rasmussen OF, Shirvan MH, Margalit H, Christiansen C, Rottem S. Nucleotide sequence, organization and characterization of the atp genes and the encoded subunits of Mycoplasma gallisepticum ATPase. The Biochemical Journal. 881-8. PMID 1386735 DOI: 10.1042/bj2850881 |
0.132 |
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| 2022 |
Matera G, Altuvia Y, Gerovac M, El Mouali Y, Margalit H, Vogel J. Global RNA interactome of Salmonella discovers a 5' UTR sponge for the MicF small RNA that connects membrane permeability to transport capacity. Molecular Cell. 82: 629-644.e4. PMID 35063132 DOI: 10.1016/j.molcel.2021.12.030 |
0.128 |
|
| 2020 |
Gatt YE, Margalit H. Common adaptive strategies underlie within-host evolution of bacterial pathogens. Molecular Biology and Evolution. PMID 33118035 DOI: 10.1093/molbev/msaa278 |
0.119 |
|
| 2012 |
Akiva E, Friedlander G, Itzhaki Z, Margalit H. A dynamic view of domain-motif interactions Plos Computational Biology. 8. DOI: 10.1371/journal.pcbi.1002341 |
0.11 |
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| 2023 |
Rubinstein M, Makhon A, Losev Y, Valenci GZ, Gatt YE, Margalit H, Fass E, Kutikov I, Murik O, Zeevi DA, Savyon M, Tau L, Kaidar Shwartz H, Dveyrin Z, Rorman E, et al. Prolonged survival of a patient with active MDR-TB HIV co-morbidity: insights from a strain with a unique genomic deletion. Frontiers in Medicine. 10: 1292665. PMID 38020140 DOI: 10.3389/fmed.2023.1292665 |
0.087 |
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| 2018 |
Altuvia Y, Bar A, Reiss N, Karavani E, Argaman L, Margalit H. In vivo cleavage rules and target repertoire of RNase III in Escherichia coli. Nucleic Acids Research. PMID 30184218 DOI: 10.1093/nar/gky816 |
0.087 |
|
| 2021 |
Pearl Mizrahi S, Elbaz N, Argaman L, Altuvia Y, Katsowich N, Socol Y, Bar A, Rosenshine I, Margalit H. The impact of Hfq-mediated sRNA-mRNA interactome on the virulence of enteropathogenic . Science Advances. 7: eabi8228. PMID 34705501 DOI: 10.1126/sciadv.abi8228 |
0.061 |
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