Year |
Citation |
Score |
2024 |
Jacobson DR, Perkins TT. Quantifying a light-induced energetic change in bacteriorhodopsin by force spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 121: e2313818121. PMID 38324569 DOI: 10.1073/pnas.2313818121 |
0.591 |
|
2022 |
Taylor AMK, Okoniewski SR, Uyetake L, Perkins TT. Force-Activated DNA Substrates for In Situ Generation of ssDNA and Designed ssDNA/dsDNA Structures in an Optical-Trapping Assay. Methods in Molecular Biology (Clifton, N.J.). 2478: 273-312. PMID 36063324 DOI: 10.1007/978-1-0716-2229-2_10 |
0.352 |
|
2021 |
Jacobson DR, Perkins TT. Free-energy changes of bacteriorhodopsin point mutants measured by single-molecule force spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33753487 DOI: 10.1073/pnas.2020083118 |
0.572 |
|
2021 |
Edwards DT, LeBlanc MA, Perkins TT. Modulation of a protein-folding landscape revealed by AFM-based force spectroscopy notwithstanding instrumental limitations. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33723041 DOI: 10.1073/pnas.2015728118 |
0.345 |
|
2020 |
Jacobson DR, Perkins TT. Correcting molecular transition rates measured by single-molecule force spectroscopy for limited temporal resolution. Physical Review. E. 102: 022402. PMID 32942397 DOI: 10.1103/Physreve.102.022402 |
0.543 |
|
2020 |
Yu H, Jacobson DR, Luo H, Perkins TT. Quantifying the Native Energetics Stabilizing Bacteriorhodopsin by Single-Molecule Force Spectroscopy. Physical Review Letters. 125: 068102. PMID 32845671 DOI: 10.1103/Physrevlett.125.068102 |
0.596 |
|
2019 |
Jacobson DR, Uyetake L, Perkins TT. Membrane-Protein Unfolding Intermediates Detected with Enhanced Precision Using a Zigzag Force Ramp. Biophysical Journal. PMID 31882249 DOI: 10.1016/J.Bpj.2019.12.003 |
0.576 |
|
2018 |
Walder R, Van Patten WJ, Ritchie DB, Montange RK, Miller TW, Woodside MT, Perkins TT. High-Precision Single-Molecule Characterization of the Folding of an HIV RNA Hairpin by Atomic Force Microscopy. Nano Letters. PMID 30234311 DOI: 10.1021/Acs.Nanolett.8B02597 |
0.795 |
|
2018 |
LeBlanc M, Walder R, Edwards D, Perkins T, Sousa M. High Precision AFM-Based SMFS of Mechanically Labile T3SS Effectors Biophysical Journal. 114: 355a. DOI: 10.1016/J.Bpj.2017.11.1975 |
0.329 |
|
2018 |
Walder R, Miller TW, Van Patten WJ, Perkins TT. New Obligate Folding Intermediate of an RNA Pseudoknot Observed Using Atomic Force Microscopy Based Force Spectroscopy with 10 μs Resolution Biophysical Journal. 114: 354a. DOI: 10.1016/J.BPJ.2017.11.1968 |
0.337 |
|
2017 |
Walder R, Van Patten WJ, Adhikari A, Perkins TT. Going Vertical to Improve the Accuracy of Atomic Force Microscopy Based Single-Molecule Force Spectroscopy. Acs Nano. PMID 29244486 DOI: 10.1021/acsnano.7b05721 |
0.437 |
|
2017 |
Edwards DT, Faulk JK, LeBlanc MA, Perkins TT. Force Spectroscopy with 9-μs Resolution and Sub-pN Stability by Tailoring AFM Cantilever Geometry. Biophysical Journal. PMID 29132641 DOI: 10.1016/J.Bpj.2017.10.023 |
0.402 |
|
2017 |
Okoniewski SR, Uyetake L, Perkins TT. Force-activated DNA substrates for probing individual proteins interacting with single-stranded DNA. Nucleic Acids Research. PMID 28977580 DOI: 10.1093/nar/gkx761 |
0.331 |
|
2017 |
Walder R, LeBlanc MA, Van Patten WJ, Edwards D, Greenberg JA, Adhikari A, Okoniewski SR, Sullan RMA, Rabuka D, Sousa MC, Perkins TT. Rapid Characterization of a Mechanically Labile α-helical Protein Enabled by Efficient Site-Specific Bioconjugation. Journal of the American Chemical Society. PMID 28677396 DOI: 10.1021/Jacs.7B02958 |
0.305 |
|
2017 |
Faulk JK, Edwards DT, Bull MS, Perkins TT. Improved Force Spectroscopy Using Focused-Ion-Beam-Modified Cantilevers. Methods in Enzymology. 582: 321-351. PMID 28062041 DOI: 10.1016/Bs.Mie.2016.08.007 |
0.379 |
|
2017 |
Okoniewski SR, Carter AR, Perkins TT. A Surface-Coupled Optical Trap with 1-bp Precision via Active Stabilization. Methods in Molecular Biology (Clifton, N.J.). 1486: 77-107. PMID 27844426 DOI: 10.1007/978-1-4939-6421-5_4 |
0.67 |
|
2016 |
Carter AR, Seaberg MH, Fan HF, Sun G, Wilds CJ, Li HW, Perkins TT. Sequence-dependent nanometer-scale conformational dynamics of individual RecBCD-DNA complexes. Nucleic Acids Research. PMID 27220465 DOI: 10.1093/Nar/Gkw445 |
0.595 |
|
2016 |
Edwards DT, Perkins TT. Optimizing force spectroscopy by modifying commercial cantilevers: improved stability, precision, and temporal resolution. Journal of Structural Biology. PMID 26804584 DOI: 10.1016/J.Jsb.2016.01.009 |
0.387 |
|
2016 |
Walder R, Van Patten WJ, Adhikari A, LeBlanc M, Okoniewski SR, Sullan RMA, Sousa MC, Perkins TT. Enhanced Site-Specific Anchoring of Biomolecules for Single-Molecule Force Spectroscopy Biophysical Journal. 110: 499a-500a. DOI: 10.1016/J.Bpj.2015.11.2670 |
0.329 |
|
2016 |
Perkins TT. Probing Single Individual Proteins Unfold and Refold with 1-μs Resolution: Improved AFM-Based Single Molecule Force Spectroscopy Biophysical Journal. 110: 375a. DOI: 10.1016/J.BPJ.2015.11.2023 |
0.342 |
|
2015 |
Edwards DT, Faulk JK, Sanders AW, Bull MS, Walder R, LeBlanc MA, Sousa MC, Perkins TT. Optimizing 1-μs-Resolution Single-Molecule Force Spectroscopy on a Commercial Atomic Force Microscope. Nano Letters. 15: 7091-8. PMID 26421945 DOI: 10.1021/Acs.Nanolett.5B03166 |
0.422 |
|
2015 |
Walder R, Paik DH, Bull MS, Sauer C, Perkins TT. Ultrastable measurement platform: sub-nm drift over hours in 3D at room temperature. Optics Express. 23: 16554-64. PMID 26191667 DOI: 10.1364/OE.23.016554 |
0.669 |
|
2015 |
Sanders AW, Faulk JK, Edwards DT, Perkins TT. Custom Modification of AFM Tips for Fast, High Force Resolution Single-Molecule Force Spectroscopy Microscopy and Microanalysis. 21: 1617-1618. DOI: 10.1017/S1431927615008867 |
0.369 |
|
2014 |
Churnside AB, Perkins TT. Ultrastable atomic force microscopy: improved force and positional stability. Febs Letters. 588: 3621-30. PMID 24801176 DOI: 10.1016/J.Febslet.2014.04.033 |
0.82 |
|
2014 |
Perkins TT. Ångström-precision optical traps and applications. Annual Review of Biophysics. 43: 279-302. PMID 24773015 DOI: 10.1146/annurev-biophys-042910-155223 |
0.322 |
|
2014 |
Bull MS, Sullan RM, Li H, Perkins TT. Improved single molecule force spectroscopy using micromachined cantilevers. Acs Nano. 8: 4984-95. PMID 24670198 DOI: 10.1021/nn5010588 |
0.41 |
|
2014 |
Walder R, Paik DH, Bull MS, Perkins TT. An Ultrastable Measurement Platform for Single-Molecule Studies: Sub-NM Lateral Stability Over 1 hour using a Multiplexed Back-Scattered Detection Biophysical Journal. 106: 392a. DOI: 10.1016/J.Bpj.2013.11.2217 |
0.674 |
|
2013 |
Paik DH, Roskens VA, Perkins TT. Torsionally constrained DNA for single-molecule assays: an efficient, ligation-free method. Nucleic Acids Research. 41: e179. PMID 23935118 DOI: 10.1016/J.Bpj.2013.11.2234 |
0.616 |
|
2013 |
Sullan RM, Churnside AB, Nguyen DM, Bull MS, Perkins TT. Atomic force microscopy with sub-picoNewton force stability for biological applications. Methods (San Diego, Calif.). 60: 131-41. PMID 23562681 DOI: 10.1016/J.Ymeth.2013.03.029 |
0.808 |
|
2013 |
Montange RK, Bull MS, Shanblatt ER, Perkins TT. Optimizing bead size reduces errors in force measurements in optical traps. Optics Express. 21: 39-48. PMID 23388894 DOI: 10.1364/OE.21.000039 |
0.795 |
|
2013 |
King GM, Churnside AB, Perkins TT. A precision force microscope for biophysics Conference Proceedings of the Society For Experimental Mechanics Series. 6: 31-36. DOI: 10.1007/978-1-4614-4436-7_5 |
0.822 |
|
2012 |
Churnside AB, Sullan RM, Nguyen DM, Case SO, Bull MS, King GM, Perkins TT. Routine and timely sub-picoNewton force stability and precision for biological applications of atomic force microscopy. Nano Letters. 12: 3557-61. PMID 22694769 DOI: 10.1016/J.Bpj.2012.11.1191 |
0.819 |
|
2012 |
Paik DH, Perkins TT. Single-molecule optical-trapping measurements with DNA anchored to an array of gold nanoposts. Methods in Molecular Biology (Clifton, N.J.). 875: 335-56. PMID 22573450 DOI: 10.1007/978-1-61779-806-1_18 |
0.649 |
|
2012 |
Paik DH, Perkins TT. Dynamics and multiple stable binding modes of DNA intercalators revealed by single-molecule force spectroscopy. Angewandte Chemie (International Ed. in English). 51: 1811-5. PMID 22162006 DOI: 10.1002/anie.201105540 |
0.64 |
|
2012 |
Paik DH, Perkins TT. Force spectroscopy of DNA: There is still a lot to learn Proceedings of Spie - the International Society For Optical Engineering. 8458. DOI: 10.1117/12.945812 |
0.661 |
|
2012 |
Montange RK, Bull MS, Shanblatt ER, Perkins TT. Optimizing Bead Size Improves Force Precision in Optical Traps Biophysical Journal. 102: 577a. DOI: 10.1016/j.bpj.2011.11.3142 |
0.787 |
|
2011 |
Paik DH, Perkins TT. Overstretching DNA at 65 pN does not require peeling from free ends or nicks. Journal of the American Chemical Society. 133: 3219-21. PMID 21207940 DOI: 10.1021/ja108952v |
0.611 |
|
2011 |
Emanuel GA, Kuriabova T, Carpenter AE, Betterton M, Perkins TT. Accommodating Drift in Hidden Markov Analysis of Single-Molecule Data Biophysical Journal. 100: 154a. DOI: 10.1016/J.Bpj.2010.12.1055 |
0.623 |
|
2011 |
Paik DH, Perkins TT. Cover Picture: Dynamics and Multiple Stable Binding Modes of DNA Intercalators Revealed by Single-Molecule Force Spectroscopy (Angew. Chem. Int. Ed. 8/2012) Angewandte Chemie International Edition. 51: 1731-1731. DOI: 10.1002/Anie.201108162 |
0.638 |
|
2011 |
Paik DH, Perkins TT. Titelbild: Dynamics and Multiple Stable Binding Modes of DNA Intercalators Revealed by Single-Molecule Force Spectroscopy (Angew. Chem. 8/2012) Angewandte Chemie. 124: 1765-1765. DOI: 10.1002/Ange.201108162 |
0.64 |
|
2010 |
Churnside AB, King GM, Perkins TT. Label-free optical imaging of membrane patches for atomic force microscopy. Optics Express. 18: 23924-32. PMID 21164738 DOI: 10.1364/Oe.18.023924 |
0.81 |
|
2010 |
King GM, Churnside AB, Perkins TT. Optical trapping meets atomic force microscopy: A precision force microscope for biophysics Proceedings of Spie - the International Society For Optical Engineering. 7762. DOI: 10.1117/12.862745 |
0.828 |
|
2010 |
Churnside AB, King GM, Perkins TT. Tip-Free Method Used to Locate Single Purple Membrane Patches for Atomic Force Microscopy Biophysical Journal. 98: 192a. DOI: 10.1016/J.Bpj.2009.12.4244 |
0.81 |
|
2010 |
Hosotani M, Carter AR, Fan H, Li H, Perkins TT. Conformational Dynamics of Single RecBCD Molecules Biophysical Journal. 98: 65a. DOI: 10.1016/J.Bpj.2009.12.371 |
0.761 |
|
2010 |
King GM, Churnside AB, Perkins TT. Precision Force Spectroscopy of Bacteriorhodopsin Biophysical Journal. 98: 588a. DOI: 10.1016/J.Bpj.2009.12.3196 |
0.811 |
|
2010 |
Perkins TT, King GM, Churnside AB, Carter AR. Ultrastable atomic force microscopy using laser-based, active noise cancelation Optics Infobase Conference Papers. |
0.798 |
|
2010 |
Perkins TT, King GM, Churnside AB, Carter AR. Ultrastable atomic force microscopy using laser-based, active noise cancelation Optics Infobase Conference Papers. |
0.798 |
|
2009 |
Paik DH, Seol Y, Halsey WA, Perkins TT. Integrating a high-force optical trap with gold nanoposts and a robust gold-DNA bond. Nano Letters. 9: 2978-83. PMID 19492836 DOI: 10.1021/Nl901404S |
0.745 |
|
2009 |
King GM, Carter AR, Churnside AB, Eberle LS, Perkins TT. Ultrastable atomic force microscopy: atomic-scale stability and registration in ambient conditions. Nano Letters. 9: 1451-6. PMID 19351191 DOI: 10.1021/Nl803298Q |
0.809 |
|
2009 |
Carter AR, Seol Y, Perkins TT. Precision surface-coupled optical-trapping assay with one-basepair resolution. Biophysical Journal. 96: 2926-34. PMID 19348774 DOI: 10.1016/J.Bpj.2008.12.3933 |
0.759 |
|
2009 |
Churnside AB, King GM, Perkins TT. Independent measurements of force and position in atomic force microscopy Proceedings of Spie - the International Society For Optical Engineering. 7405. DOI: 10.1117/12.826567 |
0.829 |
|
2009 |
Carpenter AE, Hieb AR, Betterton MD, Goodrich JA, Perkins TT. Human TBP Bending of DNA Measured at the Single Molecule Level Biophysical Journal. 96: 57a. DOI: 10.1016/J.Bpj.2008.12.190 |
0.665 |
|
2009 |
Seol Y, Perkins T. Sensitivity Of Dna-hairpins Dynamics To The Mechanism Of Force Feedback Probed Using A Surface-coupled Passive Force Clamp Biophysical Journal. 96: 291a. DOI: 10.1016/J.Bpj.2008.12.1441 |
0.686 |
|
2008 |
Churnside AB, King GM, Carter AR, Perkins TT. Improved performance of an ultrastable measurement platform using a field-programmable gate array for real-time deterministic control Proceedings of Spie - the International Society For Optical Engineering. 7042. DOI: 10.1117/12.795700 |
0.737 |
|
2007 |
Carter AR, King GM, Perkins TT. Back-scattered detection provides atomic-scale localization precision, stability, and registration in 3D. Optics Express. 15: 13434-45. PMID 19550612 DOI: 10.1364/Oe.15.013434 |
0.712 |
|
2007 |
Seol Y, Li J, Nelson PC, Perkins TT, Betterton MD. Elasticity of short DNA molecules: theory and experiment for contour lengths of 0.6-7 microm. Biophysical Journal. 93: 4360-73. PMID 17766363 DOI: 10.1529/Biophysj.107.112995 |
0.524 |
|
2007 |
Carter AR, King GM, Ulrich TA, Halsey W, Alchenberger D, Perkins TT. Stabilization of an optical microscope to 0.1 nm in three dimensions. Applied Optics. 46: 421-7. PMID 17228390 DOI: 10.1364/Ao.46.000421 |
0.703 |
|
2006 |
Seol Y, Carpenter AE, Perkins TT. Gold nanoparticles: enhanced optical trapping and sensitivity coupled with significant heating. Optics Letters. 31: 2429-31. PMID 16880845 DOI: 10.1364/Ol.31.002429 |
0.675 |
|
2005 |
Carter AR, King GM, Ulrich TA, Halsey WA, Perkins TT. 3D stabilization of an optical microscope to 0.1 nm at 1 Hz using an array of nano-posts Optics Infobase Conference Papers. DOI: 10.1364/Ls.2005.Ltue5 |
0.671 |
|
2004 |
Nugent-Glandorf L, Perkins TT. Measuring 0.1-nm motion in 1 ms in an optical microscope with differential back-focal-plane detection. Optics Letters. 29: 2611-3. PMID 15552661 DOI: 10.1364/Ol.29.002611 |
0.752 |
|
2004 |
Perkins TT, Li HW, Dalal RV, Gelles J, Block SM. Forward and reverse motion of single RecBCD molecules on DNA. Biophysical Journal. 86: 1640-8. PMID 14990491 DOI: 10.1016/S0006-3495(04)74232-0 |
0.803 |
|
2003 |
Perkins TT, Dalal RV, Mitsis PG, Block SM. Sequence-dependent pausing of single lambda exonuclease molecules. Science (New York, N.Y.). 301: 1914-8. PMID 12947034 DOI: 10.1126/Science.1088047 |
0.773 |
|
1997 |
Perkins TT, Smith DE, Chu S. Single polymer dynamics in an elongational flow. Science (New York, N.Y.). 276: 2016-21. PMID 9197259 DOI: 10.1126/Science.276.5321.2016 |
0.564 |
|
1997 |
Larson RG, Perkins TT, Smith DE, Chu S. Hydrodynamics of a DNA molecule in a flow field Physical Review E. 55: 1794-1797. DOI: 10.1103/Physreve.55.1794 |
0.591 |
|
1996 |
Smith DE, Perkins TT, Chu S. Dynamical Scaling of DNA Diffusion Coefficients Macromolecules. 29: 1372-1373. DOI: 10.1021/Ma951455P |
0.576 |
|
1995 |
Smith DE, Perkins TT, Chu S. Self-diffusion of an entangled DNA molecule by reptation. Physical Review Letters. 75: 4146-4149. PMID 10059826 DOI: 10.1103/Physrevlett.75.4146 |
0.555 |
|
1995 |
Perkins TT, Smith DE, Larson RG, Chu S. Stretching of a single tethered polymer in a uniform flow. Science (New York, N.Y.). 268: 83-7. PMID 7701345 DOI: 10.1126/Science.7701345 |
0.596 |
|
1994 |
Perkins TT, Quake SR, Smith DE, Chu S. Relaxation of a single DNA molecule observed by optical microscopy. Science (New York, N.Y.). 264: 822-6. PMID 8171336 DOI: 10.1126/Science.8171336 |
0.7 |
|
1994 |
Perkins TT, Smith DE, Chu S. Direct observation of tube-like motion of a single polymer chain. Science (New York, N.Y.). 264: 819-22. PMID 8171335 DOI: 10.1126/Science.8171335 |
0.61 |
|
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