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Ramona L. Walls, Ph.D. - Publications

Affiliations: 
2009 Stony Brook University, Stony Brook, NY, United States 
Area:
Evolution and Development Biology, Botany Biology
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Putman TE, Schaper K, Matentzoglu N, Rubinetti VP, Alquaddoomi FS, Cox C, Caufield JH, Elsarboukh G, Gehrke S, Hegde H, Reese JT, Braun I, Bruskiewich RM, Cappelletti L, Carbon S, ... ... Walls RL, et al. The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species. Nucleic Acids Research. PMID 38000386 DOI: 10.1093/nar/gkad1082  0.309
2023 Meyer R, Appeltans W, Duncan WD, Dimitrova M, Gan YM, Stjernegaard Jeppesen T, Mungall C, Paul DL, Provoost P, Robertson T, Schriml L, Suominen S, Walls R, Sweetlove M, Ung V, et al. Aligning Standards Communities for Omics Biodiversity Data: Sustainable Darwin Core-MIxS Interoperability. Biodiversity Data Journal. 11: e112420. PMID 37829294 DOI: 10.3897/BDJ.11.e112420  0.321
2022 Balk MA, Deck J, Emery KF, Walls RL, Reuter D, LaFrance R, Arroyo-Cabrales J, Barrett P, Blois J, Boileau A, Brenskelle L, Cannarozzi NR, Cruz JA, Dávalos LM, de la Sancha NU, et al. A solution to the challenges of interdisciplinary aggregation and use of specimen-level trait data. Iscience. 25: 105101. PMID 36212022 DOI: 10.1016/j.isci.2022.105101  0.334
2021 Jackson R, Matentzoglu N, Overton JA, Vita R, Balhoff JP, Buttigieg PL, Carbon S, Courtot M, Diehl AD, Dooley DM, Duncan WD, Harris NL, Haendel MA, Lewis SE, Natale DA, ... ... Walls RL, et al. OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. Database : the Journal of Biological Databases and Curation. 2021. PMID 34697637 DOI: 10.1093/database/baab069  0.325
2020 Thessen AE, Walls RL, Vogt L, Singer J, Warren R, Buttigieg PL, Balhoff JP, Mungall CJ, McGuinness DL, Stucky BJ, Yoder MJ, Haendel MA. Transforming the study of organisms: Phenomic data models and knowledge bases. Plos Computational Biology. 16: e1008376. PMID 33232313 DOI: 10.1371/journal.pcbi.1008376  0.357
2020 Gallagher RV, Falster DS, Maitner BS, Salguero-Gómez R, Vandvik V, Pearse WD, Schneider FD, Kattge J, Poelen JH, Madin JS, Ankenbrand MJ, Penone C, Feng X, Adams VM, Alroy J, ... ... Walls R, et al. Open Science principles for accelerating trait-based science across the Tree of Life. Nature Ecology & Evolution. PMID 32066887 DOI: 10.1038/S41559-020-1109-6  0.345
2019 Walls RL, Cooper L, Elser J, Gandolfo MA, Mungall CJ, Smith B, Stevenson DW, Jaiswal P. The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species. Frontiers in Plant Science. 10: 631. PMID 31214208 DOI: 10.3389/fpls.2019.00631  0.348
2019 Brenskelle L, Stucky BJ, Deck J, Walls R, Guralnick RP. Integrating herbarium specimen observations into global phenology data systems. Applications in Plant Sciences. 7: e01231. PMID 30937223 DOI: 10.1002/Aps3.1231  0.347
2019 Stucky BJ, Balhoff JP, Barve N, Barve V, Brenskelle L, Brush MH, Dahlem GA, Gilbert JDJ, Kawahara AY, Keller O, Lucky A, Mayhew PJ, Plotkin D, Seltmann KC, Talamas E, ... ... Walls R, et al. Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions. Biodiversity Data Journal. 7: e33303. PMID 30918448 DOI: 10.3897/Bdj.7.E33303  0.378
2018 Harper L, Campbell J, Cannon EKS, Jung S, Poelchau M, Walls R, Andorf C, Arnaud E, Berardini TZ, Birkett C, Cannon S, Carson J, Condon B, Cooper L, Dunn N, et al. AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database : the Journal of Biological Databases and Curation. 2018. PMID 30239679 DOI: 10.1093/Database/Bay088  0.41
2018 Kissling WD, Walls R, Bowser A, Jones MO, Kattge J, Agosti D, Amengual J, Basset A, van Bodegom PM, Cornelissen JHC, Denny EG, Deudero S, Egloff W, Elmendorf SC, Alonso García E, et al. Towards global data products of Essential Biodiversity Variables on species traits. Nature Ecology & Evolution. PMID 30224814 DOI: 10.1038/S41559-018-0667-3  0.415
2018 Stucky BJ, Guralnick R, Deck J, Denny EG, Bolmgren K, Walls R. The Plant Phenology Ontology: A New Informatics Resource for Large-Scale Integration of Plant Phenology Data. Frontiers in Plant Science. 9: 517. PMID 29765382 DOI: 10.3389/Fpls.2018.00517  0.47
2018 Yost JM, Sweeney PW, Gilbert E, Nelson G, Guralnick R, Gallinat AS, Ellwood ER, Rossington N, Willis CG, Blum SD, Walls RL, Haston EM, Denslow MW, Zohner CM, Morris AB, et al. Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants. Applications in Plant Sciences. 6: e1022. PMID 29732253 DOI: 10.1002/Aps3.1022  0.412
2017 Guralnick R, Walls R, Jetz W. Humboldt Core - toward a standardized capture of biological inventories for biodiversity monitoring, modeling and assessment Ecography. 41: 713-725. DOI: 10.1111/Ecog.02942  0.387
2016 Hoopen PT, Walls RL, Cannon EK, Cochrane G, Cole J, Johnston A, Karsch-Mizrachi I, Yilmaz P. Plant specimen contextual data consensus. Gigascience. 5: 1-4. PMID 28369359 DOI: 10.1093/Gigascience/Giw002  0.357
2016 Buttigieg PL, Pafilis E, Lewis SE, Schildhauer MP, Walls RL, Mungall CJ. The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation. Journal of Biomedical Semantics. 7: 57. PMID 27664130 DOI: 10.1186/S13326-016-0097-6  0.364
2015 Thessen AE, Bunker DE, Buttigieg PL, Cooper LD, Dahdul WM, Domisch S, Franz NM, Jaiswal P, Lawrence-Dill CJ, Midford PE, Mungall CJ, Ramírez MJ, Specht CD, Vogt L, Vos RA, ... Walls RL, et al. Emerging semantics to link phenotype and environment. Peerj. 3: e1470. PMID 26713234 DOI: 10.7717/Peerj.1470  0.359
2015 Guralnick RP, Cellinese N, Deck J, Pyle RL, Kunze J, Penev L, Walls R, Hagedorn G, Agosti D, Wieczorek J, Catapano T, Page RD. Community next steps for making globally unique identifiers work for biocollections data. Zookeys. 133-54. PMID 25901117 DOI: 10.3897/Zookeys.494.9352  0.371
2015 Oellrich A, Walls RL, Cannon EK, Cannon SB, Cooper L, Gardiner J, Gkoutos GV, Harper L, He M, Hoehndorf R, Jaiswal P, Kalberer SR, Lloyd JP, Meinke D, Menda N, et al. An ontology approach to comparative phenomics in plants. Plant Methods. 11: 10. PMID 25774204 DOI: 10.1186/S13007-015-0053-Y  0.456
2015 Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, ... ... Walls RL, et al. Finding our way through phenotypes. Plos Biology. 13: e1002033. PMID 25562316 DOI: 10.1371/Journal.Pbio.1002033  0.438
2014 Dahdul WM, Cui H, Mabee PM, Mungall CJ, Osumi-Sutherland D, Walls RL, Haendel MA. Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology. Journal of Biomedical Semantics. 5: 34. PMID 25140222 DOI: 10.1186/2041-1480-5-34  0.367
2014 Walls RL, Deck J, Guralnick R, Baskauf S, Beaman R, Blum S, Bowers S, Buttigieg PL, Davies N, Endresen D, Gandolfo MA, Hanner R, Janning A, Krishtalka L, Matsunaga A, et al. Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies. Plos One. 9: e89606. PMID 24595056 DOI: 10.1371/Journal.Pone.0089606  0.452
2014 Walls RL, Guralnick R, Deck J, Buntzman A, Buttigieg PL, Davies N, Denslow MW, Gallery RE, Parnell JJ, Osumi-Sutherland D, Robbins RJ, Rocca-Serra P, Wieczorek J, Zheng J. Meeting report: Advancing practical applications of biodiversity ontologies Standards in Genomic Sciences. 9. DOI: 10.1186/1944-3277-9-17  0.335
2013 Burleigh JG, Alphonse K, Alverson AJ, Bik HM, Blank C, Cirranello AL, Cui H, Daly M, Dietterich TG, Gasparich G, Irvine J, Julius M, Kaufman S, Law E, Liu J, ... ... Walls RL, et al. Next-generation phenomics for the Tree of Life. Plos Currents. 5. PMID 23827969 DOI: 10.1371/Currents.Tol.085C713Acafc8711B2Ff7010A4B03733  0.434
2013 Cooper L, Walls RL, Elser J, Gandolfo MA, Stevenson DW, Smith B, Preece J, Athreya B, Mungall CJ, Rensing S, Hiss M, Lang D, Reski R, Berardini TZ, Li D, et al. The plant ontology as a tool for comparative plant anatomy and genomic analyses. Plant & Cell Physiology. 54: e1. PMID 23220694 DOI: 10.1093/Pcp/Pcs163  0.445
2012 Walls RL, Athreya B, Cooper L, Elser J, Gandolfo MA, Jaiswal P, Mungall CJ, Preece J, Rensing S, Smith B, Stevenson DW. Ontologies as integrative tools for plant science. American Journal of Botany. 99: 1263-75. PMID 22847540 DOI: 10.3732/Ajb.1200222  0.49
2012 Lens F, Cooper L, Gandolfo MA, Groover A, Jaiswal P, Lachenbruch B, Spicer R, Staton ME, Stevenson DW, Walls RL, Wegrzyn J. An extension of the plant ontology project supporting wood anatomy and development research Iawa Journal. 33: 113-117. DOI: 10.1163/22941932-90000083  0.388
2012 Wheeler QD, Knapp S, Stevenson DW, Stevenson J, Blum SD, Boom BM, Borisy GG, Buizer JL, De Carvalho MR, Cibrian A, Donoghue MJ, Doyle V, Gerson EM, Graham CH, Graves P, ... ... Walls RL, et al. Mapping the biosphere: Exploring species to understand the origin, organization and sustainability of biodiversity Systematics and Biodiversity. 10: 1-20. DOI: 10.1080/14772000.2012.665095  0.359
2011 Walls RL. Angiosperm leaf vein patterns are linked to leaf functions in a global-scale data set. American Journal of Botany. 98: 244-53. PMID 21613113 DOI: 10.3732/Ajb.1000154  0.37
2010 Walls RL. Hybridization and plasticity contribute to divergence among coastal and wetland populations of invasive Hybrid Japanese knotweed s.l. (Fallopia spp.) Estuaries and Coasts. 33: 902-918. DOI: 10.1007/S12237-009-9190-8  0.32
2008 Richards CL, Walls RL, Bailey JP, Parameswaran R, George T, Pigliucci M. Plasticity in salt tolerance traits allows for invasion of novel habitat by Japanese knotweed s. l. (Fallopia japonica and F.xbohemica, Polygonaceae). American Journal of Botany. 95: 931-42. PMID 21632416 DOI: 10.3732/Ajb.2007364  0.371
2005 Walls R, Appel H, Cipollini M, Schultz J. Fertility, root reserves and the cost of inducible defenses in the perennial plant Solanum carolinense. Journal of Chemical Ecology. 31: 2263-88. PMID 16195843 DOI: 10.1007/S10886-005-7101-4  0.354
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