74 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 de Lorenzo V, Timmis K. Don't show us your instrument park: Give us your students/give us to your students! Microbial Biotechnology. PMID 37585211 DOI: 10.1111/1751-7915.14326  0.373
2023 Dvořák P, Galvão TC, Pflüger-Grau K, Banks AM, de Lorenzo V, Jiménez JI. Water potential governs the effector specificity of the transcriptional regulator XylR of Pseudomonas putida. Environmental Microbiology. PMID 36683138 DOI: 10.1111/1462-2920.16342  0.73
2022 Martínez-García E, Fraile S, Algar E, Aparicio T, Velázquez E, Calles B, Tas H, Blázquez B, Martín B, Prieto C, Sánchez-Sampedro L, Nørholm MHH, Volke DC, Wirth NT, Dvořák P, ... ... de Lorenzo V, et al. SEVA 4.0: an update of the Standard European Vector Architecture database for advanced analysis and programming of bacterial phenotypes. Nucleic Acids Research. PMID 36420904 DOI: 10.1093/nar/gkac1059  0.732
2022 Velázquez E, Álvarez B, Fernández LÁ, de Lorenzo V. Hypermutation of specific genomic loci of Pseudomonas putida for continuous evolution of target genes. Microbial Biotechnology. PMID 35695013 DOI: 10.1111/1751-7915.14098  0.315
2021 Durante-Rodríguez G, Páez-Espino D, de Lorenzo V. A Bifan Motif Shaped by ArsR1, ArsR2, and Their Cognate Promoters Frames Arsenic Tolerance of . Frontiers in Microbiology. 12: 641440. PMID 33776973 DOI: 10.3389/fmicb.2021.641440  0.319
2021 Kim J, Goñi-Moreno A, de Lorenzo V. Subcellular Architecture of the Gene Expression Flow of the TOL Catabolic Plasmid of Pseudomonas putida mt-2. Mbio. 12. PMID 33622725 DOI: 10.1128/mBio.03685-20  0.312
2020 Algar E, Al-Ramahi Y, de Lorenzo V, Martínez-García E. Environmental performance of Pseudomonas putida with a uracylated genome. Chembiochem : a European Journal of Chemical Biology. PMID 32597553 DOI: 10.1002/cbic.202000330  0.324
2020 Beal J, Goñi-Moreno A, Myers C, Hecht A, de Vicente MDC, Parco M, Schmidt M, Timmis K, Baldwin G, Friedrichs S, Freemont P, Kiga D, Ordozgoiti E, Rennig M, Rios L, ... ... de Lorenzo V, et al. The long journey towards standards for engineering biosystems: Are the Molecular Biology and the Biotech communities ready to standardise? Embo Reports. e50521. PMID 32337821 DOI: 10.15252/Embr.202050521  0.436
2020 Aparicio T, de Lorenzo V, Martínez-García E. A Broad Host Range Plasmid-Based Roadmap for ssDNA-Based Recombineering in Gram-Negative Bacteria. Methods in Molecular Biology (Clifton, N.J.). 2075: 383-398. PMID 31584177 DOI: 10.1007/978-1-4939-9877-7_27  0.325
2019 Timmis K, Cavicchioli R, Garcia JL, Nogales B, Chavarría M, Stein L, McGenity TJ, Webster N, Singh B, Handelsman J, de Lorenzo V, Pruzzo C, Timmis J, Martín JLR, Verstraete W, et al. The urgent need for microbiology literacy in society. Environmental Microbiology. PMID 30912268 DOI: 10.1111/1462-2920.14611  0.45
2019 Kim J, Goñi-Moreno A, Calles B, de Lorenzo V. Spatial organization of the gene expression hardware in Pseudomonas putida. Environmental Microbiology. PMID 30689295 DOI: 10.1111/1462-2920.14544  0.309
2018 Sánchez-Pascuala A, Nikel PI, de Lorenzo V. Re-Factoring Glycolytic Genes for Targeted Engineering of Catabolism in Gram-Negative Bacteria. Methods in Molecular Biology (Clifton, N.J.). 1772: 3-24. PMID 29754220 DOI: 10.1007/978-1-4939-7795-6_1  0.323
2018 Aparicio T, de Lorenzo V, Martínez-García E. CRISPR/Cas9-Based Counterselection Boosts Recombineering Efficiency in Pseudomonas putida. Biotechnology Journal. 13: e1700161. PMID 29058367 DOI: 10.1002/biot.201700161  0.308
2017 Ricaurte DE, Martínez-García E, Nyerges Á, Pál C, de Lorenzo V, Aparicio T. A standardized workflow for surveying recombinases expands bacterial genome-editing capabilities. Microbial Biotechnology. PMID 29094478 DOI: 10.1111/1751-7915.12846  0.314
2017 Timmis K, de Lorenzo V, Verstraete W, Ramos JL, Danchin A, Brüssow H, Singh BK, Timmis JK. The contribution of microbial biotechnology to economic growth and employment creation. Microbial Biotechnology. PMID 28868756 DOI: 10.1111/1751-7915.12845  0.443
2017 Timmis K, de Vos WM, Ramos JL, Vlaeminck SE, Prieto A, Danchin A, Verstraete W, de Lorenzo V, Lee SY, Brüssow H, Timmis JK, Singh BK. The contribution of microbial biotechnology to sustainable development goals. Microbial Biotechnology. PMID 28840974 DOI: 10.1111/1751-7915.12818  0.466
2016 Timmis K, Ramos JL, de Vos W, Vlaeminck S, Prieto A, Danchin A, Verstraete W, de Lorenzo V. Microbial Biotechnology-2020. Microbial Biotechnology. PMID 27509838 DOI: 10.1111/1751-7915.12403  0.456
2016 Guantes R, Benedetti I, Silva-Rocha R, de Lorenzo V. Transcription factor levels enable metabolic diversification of single cells of environmental bacteria. The Isme Journal. 10: 1122-33. PMID 26636554 DOI: 10.1038/ismej.2015.193  0.323
2015 Zobel S, Benedetti I, Eisenbach L, de Lorenzo V, Wierckx N, Blank LM. Tn7-Based Device for Calibrated Heterologous Gene Expression in Pseudomonas putida. Acs Synthetic Biology. 4: 1341-51. PMID 26133359 DOI: 10.1021/acssynbio.5b00058  0.318
2015 Martínez-García E, Benedetti I, Hueso A, De Lorenzo V. Mining Environmental Plasmids for Synthetic Biology Parts and Devices. Microbiology Spectrum. 3: PLAS-0033-2014. PMID 26104565 DOI: 10.1128/microbiolspec.PLAS-0033-2014  0.316
2015 Páez-Espino AD, Chavarría M, de Lorenzo V. The two paralogue phoN (phosphinothricin acetyl transferase) genes of Pseudomonas putida encode functionally different proteins. Environmental Microbiology. 17: 3330-40. PMID 25684119 DOI: 10.1111/1462-2920.12798  0.309
2015 de las Heras A, Martínez-García E, Domingo-Sananes MR, de Lorenzo V. Widening functional boundaries of the σ(54) promoter Pu of Pseudomonas putida by defeating extant physiological constraints. Molecular Biosystems. 11: 734-42. PMID 25560994 DOI: 10.1039/c4mb00557k  0.33
2015 Pérez-Pantoja D, Kim J, Silva-Rocha R, de Lorenzo V. The differential response of the Pben promoter of Pseudomonas putida mt-2 to BenR and XylS prevents metabolic conflicts in m-xylene biodegradation. Environmental Microbiology. 17: 64-75. PMID 24588992 DOI: 10.1111/1462-2920.12443  0.324
2014 Silva-Rocha R, de Lorenzo V. The pWW0 plasmid imposes a stochastic expression regime to the chromosomal ortho pathway for benzoate metabolism in Pseudomonas putida. Fems Microbiology Letters. 356: 176-83. PMID 25848660 DOI: 10.1111/1574-6968.12400  0.32
2014 Martínez-García E, Aparicio T, de Lorenzo V, Nikel PI. New transposon tools tailored for metabolic engineering of gram-negative microbial cell factories. Frontiers in Bioengineering and Biotechnology. 2: 46. PMID 25389526 DOI: 10.3389/fbioe.2014.00046  0.32
2014 Durante-Rodríguez G, de Lorenzo V, Martínez-García E. The Standard European Vector Architecture (SEVA) plasmid toolkit. Methods in Molecular Biology (Clifton, N.J.). 1149: 469-78. PMID 24818926 DOI: 10.1007/978-1-4939-0473-0_36  0.336
2014 Timmis K, de Lorenzo V, Verstraete W, Garcia JL, Ramos JL, Santos H, Economidis I, Nogales B, Timmis JK, Fonseca C, Pruzzo C, Karagouni A, Panopoulos N, Dixon B. Pipelines for New Chemicals: a strategy to create new value chains and stimulate innovation-based economic revival in Southern European countries. Environmental Microbiology. 16: 9-18. PMID 24387039 DOI: 10.1111/1462-2920.12337  0.438
2014 Calles B, de Lorenzo V. Expanding the boolean logic of the prokaryotic transcription factor XylR by functionalization of permissive sites with a protease-target sequence. Acs Synthetic Biology. 2: 594-603. PMID 23875967 DOI: 10.1021/sb400050k  0.334
2012 Nikel PI, de Lorenzo V. Implantation of unmarked regulatory and metabolic modules in Gram-negative bacteria with specialised mini-transposon delivery vectors. Journal of Biotechnology. 163: 143-54. PMID 22609234 DOI: 10.1016/j.jbiotec.2012.05.002  0.311
2012 Silva-Rocha R, Chavarría M, Kleijn RJ, Sauer U, de Lorenzo V. The IHF regulon of exponentially growing Pseudomonas putida cells. Environmental Microbiology. 15: 49-63. PMID 22510163 DOI: 10.1111/j.1462-2920.2012.02750.x  0.31
2012 Silva-Rocha R, de Lorenzo V. A GFP-lacZ bicistronic reporter system for promoter analysis in environmental gram-negative bacteria. Plos One. 7: e34675. PMID 22493710 DOI: 10.1371/journal.pone.0034675  0.336
2012 de Las Heras A, de Lorenzo V. Engineering whole-cell biosensors with no antibiotic markers for monitoring aromatic compounds in the environment. Methods in Molecular Biology (Clifton, N.J.). 834: 261-81. PMID 22144365 DOI: 10.1007/978-1-61779-483-4_17  0.355
2011 Valls M, Silva-Rocha R, Cases I, Muñoz A, de Lorenzo V. Functional analysis of the integration host factor site of the σ(54) Pu promoter of Pseudomonas putida by in vivo UV imprinting. Molecular Microbiology. 82: 591-601. PMID 21958188 DOI: 10.1111/J.1365-2958.2011.07835.X  0.691
2011 de Las Heras A, Chavarría M, de Lorenzo V. Association of dnt genes of Burkholderia sp. DNT with the substrate-blind regulator DntR draws the evolutionary itinerary of 2,4-dinitrotoluene biodegradation. Molecular Microbiology. 82: 287-99. PMID 21923773 DOI: 10.1111/j.1365-2958.2011.07825.x  0.328
2008 Garmendia J, de las Heras A, Galvão TC, de Lorenzo V. Tracing explosives in soil with transcriptional regulators of Pseudomonas putida evolved for responding to nitrotoluenes. Microbial Biotechnology. 1: 236-46. PMID 21261843 DOI: 10.1111/j.1751-7915.2008.00027.x  0.745
2007 Galvão TC, Mencía M, de Lorenzo V. Emergence of novel functions in transcriptional regulators by regression to stem protein types. Molecular Microbiology. 65: 907-19. PMID 17645451 DOI: 10.1111/j.1365-2958.2007.05832.x  0.753
2007 Jurado P, Fernández LA, de Lorenzo V. In vivo drafting of single-chain antibodies for regulatory duty on the sigma54-promoter Pu of the TOL plasmid. Molecular Microbiology. 60: 1218-27. PMID 16689797 DOI: 10.1111/j.1365-2958.2006.05183.x  0.307
2006 Galvão TC, de Lorenzo V, Cánovas D. Uncoupling of choline-O-sulphate utilization from osmoprotection in Pseudomonas putida. Molecular Microbiology. 62: 1643-54. PMID 17116241 DOI: 10.1111/j.1365-2958.2006.05488.x  0.735
2006 Velázquez F, de Lorenzo V, Valls M. The m-xylene biodegradation capacity of Pseudomonas putida mt-2 is submitted to adaptation to abiotic stresses: evidence from expression profiling of xyl genes. Environmental Microbiology. 8: 591-602. PMID 16584471 DOI: 10.1111/J.1462-2920.2005.00936.X  0.639
2006 Mohn WW, Garmendia J, Galvao TC, de Lorenzo V. Surveying biotransformations with à la carte genetic traps: translating dehydrochlorination of lindane (gamma-hexachlorocyclohexane) into lacZ-based phenotypes. Environmental Microbiology. 8: 546-55. PMID 16478460 DOI: 10.1111/J.1462-2920.2006.00983.X  0.755
2006 Galvão TC, de Lorenzo V. Transcriptional regulators à la carte: engineering new effector specificities in bacterial regulatory proteins. Current Opinion in Biotechnology. 17: 34-42. PMID 16359854 DOI: 10.1016/j.copbio.2005.12.002  0.759
2006 Yuste L, Hervás AB, Canosa I, Tobes R, Jiménez JI, Nogales J, Pérez-Pérez MM, Santero E, Díaz E, Ramos JL, de Lorenzo V, Rojo F. Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray. Environmental Microbiology. 8: 165-77. PMID 16343331 DOI: 10.1111/j.1462-2920.2005.00890.x  0.589
2005 Galvão TC, Mohn WW, de Lorenzo V. Exploring the microbial biodegradation and biotransformation gene pool. Trends in Biotechnology. 23: 497-506. PMID 16125262 DOI: 10.1016/J.Tibtech.2005.08.002  0.729
2005 Galvão TC, de Lorenzo V. Adaptation of the yeast URA3 selection system to gram-negative bacteria and generation of a {delta}betCDE Pseudomonas putida strain. Applied and Environmental Microbiology. 71: 883-92. PMID 15691944 DOI: 10.1128/AEM.71.2.883-892.2005  0.754
2005 Cases I, de Lorenzo V. Promoters in the environment: transcriptional regulation in its natural context. Nature Reviews. Microbiology. 3: 105-18. PMID 15685222 DOI: 10.1038/nrmicro1084  0.307
2005 Carmona M, Fernández S, Rodríguez MJ, de Lorenzo V. m-xylene-responsive Pu-PnifH hybrid sigma54 promoters that overcome physiological control in Pseudomonas putida KT2442. Journal of Bacteriology. 187: 125-34. PMID 15601696 DOI: 10.1128/JB.187.1.125-134.2005  0.74
2004 Cases I, Ussery DW, de Lorenzo V. The sigma54 regulon (sigmulon) of Pseudomonas putida. Environmental Microbiology. 5: 1281-93. PMID 14641574 DOI: 10.1111/j.1462-2920.2003.00528.x  0.332
2003 Rescalli E, Saini S, Bartocci C, Rychlewski L, De Lorenzo V, Bertoni G. Novel physiological modulation of the Pu promoter of TOL plasmid: negative regulatory role of the TurA protein of Pseudomonas putida in the response to suboptimal growth temperatures. The Journal of Biological Chemistry. 279: 7777-84. PMID 14672954 DOI: 10.1074/jbc.M310580200  0.361
2003 Valls M, de Lorenzo V. Transient XylR binding to the UAS of the Pseudomonas putida sigma54 promoter Pu revealed with high intensity UV footprinting in vivo. Nucleic Acids Research. 31: 6926-34. PMID 14627825 DOI: 10.1093/Nar/Gkg912  0.68
2002 Valls M, de Lorenzo V. Exploiting the genetic and biochemical capacities of bacteria for the remediation of heavy metal pollution. Fems Microbiology Reviews. 26: 327-38. PMID 12413663 DOI: 10.1111/J.1574-6976.2002.Tb00618.X  0.611
2002 Valls M, Buckle M, de Lorenzo V. In vivo UV laser footprinting of the Pseudomonas putidasigma 54Pu promoter reveals that integration host factor couples transcriptional activity to growth phase. The Journal of Biological Chemistry. 277: 2169-75. PMID 11694511 DOI: 10.1074/Jbc.M108162200  0.659
2001 Bartels F, Fernández S, Holtel A, Timmis KN, de Lorenzo V. The essential HupB and HupN proteins of Pseudomonas putida provide redundant and nonspecific DNA-bending functions. The Journal of Biological Chemistry. 276: 16641-8. PMID 11278879 DOI: 10.1074/jbc.M011295200  0.543
1998 Tzschaschel BD, Guzmán CA, Timmis KN, de Lorenzo V. An Escherichia coli hemolysin transport system-based vector for the export of polypeptides: export of Shiga-like toxin IIeB subunit by Salmonella typhimurium aroA. Nature Biotechnology. 14: 765-9. PMID 9630987 DOI: 10.1038/nbt0696-765  0.564
1997 Calb R, Davidovitch A, Koby S, Giladi H, Goldenberg D, Margalit H, Holtel A, Timmis K, Sanchez-Romero JM, de Lorenzo V, Oppenheim AB. Structure and function of the Pseudomonas putida integration host factor. Journal of Bacteriology. 178: 6319-26. PMID 8892836 DOI: 10.1128/Jb.178.21.6319-6326.1996  0.557
1997 Jaenecke S, de Lorenzo V, Timmis KN, Díaz E. A stringently controlled expression system for analysing lateral gene transfer between bacteria. Molecular Microbiology. 21: 293-300. PMID 8858584 DOI: 10.1046/j.1365-2958.1996.6411358.x  0.549
1996 Tzschaschel BD, Klee SR, de Lorenzo V, Timmis KN, Guzmán CA. Towards a vaccine candidate against Shigella dysenteriae 1: expression of the Shiga toxin B-subunit in an attenuated Shigella flexneri aroD carrier strain. Microbial Pathogenesis. 21: 277-88. PMID 8905616 DOI: 10.1006/mpat.1996.0061  0.469
1995 Ramos JL, Díaz E, Dowling D, de Lorenzo V, Molin S, O'Gara F, Ramos C, Timmis KN. The behavior of bacteria designed for biodegradation. Bio/Technology (Nature Publishing Company). 12: 1349-56. PMID 7765565 DOI: 10.1038/nbt1294-1349  0.535
1995 Díaz E, Munthali M, de Lorenzo V, Timmis KN. Universal barrier to lateral spread of specific genes among microorganisms. Molecular Microbiology. 13: 855-61. PMID 7529352 DOI: 10.1111/j.1365-2958.1994.tb00477.x  0.554
1994 Herrero M, de Lorenzo V, Ensley B, Timmis KN. A T7 RNA polymerase-based system for the construction of Pseudomonas strains with phenotypes dependent on TOL-meta pathway effectors. Gene. 134: 103-6. PMID 8244019 DOI: 10.1016/0378-1119(93)90181-2  0.574
1994 Kessler B, Herrero M, Timmis KN, de Lorenzo V. Genetic evidence that the XylS regulator of the Pseudomonas TOL meta operon controls the Pm promoter through weak DNA-protein interactions. Journal of Bacteriology. 176: 3171-6. PMID 8195070 DOI: 10.1128/jb.176.11.3171-3176.1994  0.565
1994 Pérez-Martín J, Timmis KN, de Lorenzo V. Co-regulation by bent DNA. Functional substitutions of the integration host factor site at sigma 54-dependent promoter Pu of the upper-TOL operon by intrinsically curved sequences. The Journal of Biological Chemistry. 269: 22657-62. PMID 8077217  0.57
1994 Kessler B, Marqués S, Köhler T, Ramos JL, Timmis KN, de Lorenzo V. Cross talk between catabolic pathways in Pseudomonas putida: XylS-dependent and -independent activation of the TOL meta operon requires the same cis-acting sequences within the Pm promoter. Journal of Bacteriology. 176: 5578-82. PMID 8071244 DOI: 10.1128/jb.176.17.5578-5582.1994  0.566
1994 de Lorenzo V, Timmis KN. Analysis and construction of stable phenotypes in gram-negative bacteria with Tn5- and Tn10-derived minitransposons. Methods in Enzymology. 235: 386-405. PMID 8057911 DOI: 10.1016/0076-6879(94)35157-0  0.485
1994 Kessler B, Timmis KN, de Lorenzo V. The organization of the Pm promoter of the TOL plasmid reflects the structure of its cognate activator protein XylS. Molecular & General Genetics : Mgg. 244: 596-605. PMID 7969028 DOI: 10.1007/BF00282749  0.54
1993 Kessler B, de Lorenzo V, Timmis KN. Identification of a cis-acting sequence within the Pm promoter of the TOL plasmid which confers XylS-mediated responsiveness to substituted benzoates. Journal of Molecular Biology. 230: 699-703. PMID 8478926 DOI: 10.1006/jmbi.1993.1189  0.538
1993 de Lorenzo V, Fernández S, Herrero M, Jakubzik U, Timmis KN. Engineering of alkyl- and haloaromatic-responsive gene expression with mini-transposons containing regulated promoters of biodegradative pathways of Pseudomonas. Gene. 130: 41-6. PMID 8393826 DOI: 10.1016/0378-1119(93)90344-3  0.593
1993 de Lorenzo V, Eltis L, Kessler B, Timmis KN. Analysis of Pseudomonas gene products using lacIq/Ptrp-lac plasmids and transposons that confer conditional phenotypes. Gene. 123: 17-24. PMID 8380783 DOI: 10.1016/0378-1119(93)90533-9  0.58
1993 de Lorenzo V, Cases I, Herrero M, Timmis KN. Early and late responses of TOL promoters to pathway inducers: identification of postexponential promoters in Pseudomonas putida with lacZ-tet bicistronic reporters. Journal of Bacteriology. 175: 6902-7. PMID 8226632 DOI: 10.1128/jb.175.21.6902-6907.1993  0.554
1993 Michán C, Kessler B, de Lorenzo V, Timmis KN, Ramos JL. XylS domain interactions can be deduced from intraallelic dominance in double mutants of Pseudomonas putida. Molecular & General Genetics : Mgg. 235: 406-12. PMID 1465113 DOI: 10.1007/BF00279387  0.54
1993 Su GF, Brahmbhatt HN, de Lorenzo V, Wehland J, Timmis KN. Extracellular export of Shiga toxin B-subunit/haemolysin A (C-terminus) fusion protein expressed in Salmonella typhimurium aroA-mutant and stimulation of B-subunit specific antibody responses in mice. Microbial Pathogenesis. 13: 465-76. PMID 1302285 DOI: 10.1016/0882-4010(92)90013-e  0.509
1992 Kessler B, de Lorenzo V, Timmis KN. A general system to integrate lacZ fusions into the chromosomes of gram-negative eubacteria: regulation of the Pm promoter of the TOL plasmid studied with all controlling elements in monocopy. Molecular & General Genetics : Mgg. 233: 293-301. PMID 1318499 DOI: 10.1007/BF00587591  0.564
1991 de Lorenzo V, Herrero M, Metzke M, Timmis KN. An upstream XylR- and IHF-induced nucleoprotein complex regulates the sigma 54-dependent Pu promoter of TOL plasmid. The Embo Journal. 10: 1159-67. PMID 2022186 DOI: 10.1002/j.1460-2075.1991.tb08056.x  0.598
1990 de Lorenzo V, Herrero M, Jakubzik U, Timmis KN. Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in gram-negative eubacteria. Journal of Bacteriology. 172: 6568-72. PMID 2172217 DOI: 10.1128/jb.172.11.6568-6572.1990  0.571
1990 Herrero M, de Lorenzo V, Timmis KN. Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria. Journal of Bacteriology. 172: 6557-67. PMID 2172216 DOI: 10.1128/jb.172.11.6557-6567.1990  0.563
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