| Year |
Citation |
Score |
| 2022 |
Timilsena PR, Wafula EK, Barrett CF, Ayyampalayam S, McNeal JR, Rentsch JD, McKain MR, Heyduk K, Harkess A, Villegente M, Conran JG, Illing N, Fogliani B, Ané C, Pires JC, ... Davis JI, et al. Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes. Frontiers in Plant Science. 13: 876779. PMID 36483967 DOI: 10.3389/fpls.2022.876779 |
0.379 |
|
| 2018 |
Givnish TJ, Zuluaga A, Spalink D, Soto Gomez M, Lam VKY, Saarela JM, Sass C, Iles WJD, de Sousa DJL, Leebens-Mack J, Chris Pires J, Zomlefer WB, Gandolfo MA, Davis JI, Stevenson DW, et al. Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi-gene analyses, and a functional model for the origin of monocots. American Journal of Botany. PMID 30368769 DOI: 10.1002/Ajb2.1178 |
0.405 |
|
| 2017 |
Petersen G, Cuenca A, Zervas A, Ross GT, Graham SW, Barrett CF, Davis JI, Seberg O. Mitochondrial genome evolution in Alismatales: Size reduction and extensive loss of ribosomal protein genes. Plos One. 12: e0177606. PMID 28545148 DOI: 10.1371/Journal.Pone.0177606 |
0.41 |
|
| 2016 |
Ross TG, Barrett CF, Soto Gomez M, Lam VKY, Henriquez CL, Les DH, Davis JI, Cuenca A, Petersen G, Seberg O, Thadeo M, Givnish TJ, Conran J, Stevenson DW, Graham SW. Plastid phylogenomics and molecular evolution of Alismatales. Cladistics : the International Journal of the Willi Hennig Society. 32: 160-178. PMID 34736309 DOI: 10.1111/cla.12133 |
0.353 |
|
| 2016 |
Petersen G, Seberg O, Cuenca A, Stevenson DW, Thadeo M, Davis JI, Graham S, Ross TG. Phylogeny of the Alismatales (Monocotyledons) and the relationship of Acorus (Acorales?). Cladistics : the International Journal of the Willi Hennig Society. 32: 141-159. PMID 34732019 DOI: 10.1111/cla.12120 |
0.384 |
|
| 2016 |
Cuenca A, Ross TG, Graham SW, Barrett CF, Davis JI, Seberg O, Petersen G. Localized retroprocessing as a model of intron loss in the plant mitochondrial genome. Genome Biology and Evolution. PMID 27435795 DOI: 10.1093/Gbe/Evw148 |
0.42 |
|
| 2016 |
McKain MR, Tang H, McNeal JR, Ayyampalayam S, Davis JI, dePamphilis CW, Givnish TJ, Pires JC, Stevenson DW, Leebens-Mack JH. A phylogenomic assessment of ancient polyploidy and genome evolution across the Poales. Genome Biology and Evolution. PMID 26988252 DOI: 10.1093/Gbe/Evw060 |
0.426 |
|
| 2015 |
Barrett CF, Baker WJ, Comer JR, Conran JG, Lahmeyer SC, Leebens-Mack JH, Li J, Lim GS, Mayfield-Jones DR, Perez L, Medina J, Pires JC, Santos C, Wm Stevenson D, Zomlefer WB, ... Davis JI, et al. Plastid genomes reveal support for deep phylogenetic relationships and extensive rate variation among palms and other commelinid monocots. The New Phytologist. PMID 26350789 DOI: 10.1111/Nph.13617 |
0.436 |
|
| 2015 |
Comer JR, Zomlefer WB, Barrett CF, Davis JI, Stevenson DW, Heyduk K, Leebens-Mack JH. Resolving relationships within the palm subfamily Arecoideae (Arecaceae) using plastid sequences derived from next-generation sequencing. American Journal of Botany. 102: 888-99. PMID 26101415 DOI: 10.3732/Ajb.1500057 |
0.382 |
|
| 2015 |
Saarela JM, Wysocki WP, Barrett CF, Soreng RJ, Davis JI, Clark LG, Kelchner SA, Pires JC, Edger PP, Mayfield DR, Duvall MR. Plastid phylogenomics of the cool-season grass subfamily: clarification of relationships among early-diverging tribes. Aob Plants. 7. PMID 25940204 DOI: 10.1093/Aobpla/Plv046 |
0.492 |
|
| 2015 |
Soreng RJ, Peterson PM, Romaschenko K, Davidse G, Zuloaga FO, Judziewicz EJ, Filgueiras TS, Davis JI, Morrone O. A worldwide phylogenetic classification of the Poaceae (Gramineae) Journal of Systematics and Evolution. 53: 117-137. DOI: 10.1111/Jse.12150 |
0.389 |
|
| 2015 |
Ross TG, Barrett CF, Soto Gomez M, Lam VKY, Henriquez CL, Les DH, Davis JI, Cuenca A, Petersen G, Seberg O, Thadeo M, Givnish TJ, Conran J, Stevenson DW, Graham SW. Plastid phylogenomics and molecular evolution of Alismatales Cladistics. DOI: 10.1111/Cla.12133 |
0.446 |
|
| 2015 |
Petersen G, Seberg O, Cuenca A, Stevenson DW, Thadeo M, Davis JI, Graham S, Ross TG. Phylogeny of the Alismatales (Monocotyledons) and the relationship of Acorus (Acorales?) Cladistics. DOI: 10.1111/Cla.12120 |
0.472 |
|
| 2014 |
Barrett CF, Specht CD, Leebens-Mack J, Stevenson DW, Zomlefer WB, Davis JI. Resolving ancient radiations: can complete plastid gene sets elucidate deep relationships among the tropical gingers (Zingiberales)? Annals of Botany. 113: 119-33. PMID 24280362 DOI: 10.1093/Aob/Mct264 |
0.472 |
|
| 2013 |
Barrett CF, Davis JI, Leebens-Mack J, Conran JG, Stevenson DW. Plastid genomes and deep relationships among the commelinid monocot angiosperms. Cladistics : the International Journal of the Willi Hennig Society. 29: 65-87. PMID 34814372 DOI: 10.1111/j.1096-0031.2012.00418.x |
0.385 |
|
| 2013 |
Petersen G, Seberg O, Davis JI. Phylogeny of the Liliales (Monocotyledons) with special emphasis on data partition congruence and RNA editing Cladistics. 29: 274-295. DOI: 10.1111/J.1096-0031.2012.00427.X |
0.408 |
|
| 2013 |
Barrett CF, Davis JI, Leebens-Mack J, Conran JG, Stevenson DW. Plastid genomes and deep relationships among the commelinid monocot angiosperms Cladistics. 29: 65-87. DOI: 10.1111/J.1096-0031.2012.00418.X |
0.473 |
|
| 2012 |
Petersen G, Seberg O, Davis JI. Phylogeny of the Liliales (Monocotyledons) with special emphasis on data partition congruence and RNA editing. Cladistics : the International Journal of the Willi Hennig Society. 29: 274-295. PMID 34818830 DOI: 10.1111/j.1096-0031.2012.00427.x |
0.307 |
|
| 2012 |
Barrett CF, Davis JI. The plastid genome of the mycoheterotrophic Corallorhiza striata (Orchidaceae) is in the relatively early stages of degradation. American Journal of Botany. 99: 1513-23. PMID 22935364 DOI: 10.3732/Ajb.1200256 |
0.436 |
|
| 2012 |
Seberg O, Petersen G, Davis JI, Pires JC, Stevenson DW, Chase MW, Fay MF, Devey DS, Jørgensen T, Sytsma KJ, Pillon Y. Phylogeny of the Asparagales based on three plastid and two mitochondrial genes. American Journal of Botany. 99: 875-89. PMID 22539521 DOI: 10.3732/Ajb.1100468 |
0.444 |
|
| 2012 |
Cohen JI, Litt A, Davis JI. Comparative floral development in Lithospermum (Boraginaceae) and implications for the evolution and development of heterostyly. American Journal of Botany. 99: 797-805. PMID 22494907 DOI: 10.3732/Ajb.1100329 |
0.388 |
|
| 2012 |
Cohen JI, Davis JI. Molecular phylogenetics, molecular evolution, and patterns of clade support in lithospermum (Boraginaceae) and related taxa Systematic Botany. 37: 490-506. DOI: 10.1600/03634412X635539 |
0.364 |
|
| 2010 |
Davis JI, Soreng RJ. Migration of endpoints of two genes relative to boundaries between regions of the plastid genome in the grass family (Poaceae). American Journal of Botany. 97: 874-92. PMID 21622452 DOI: 10.3732/Ajb.0900228 |
0.408 |
|
| 2010 |
Cuenca A, Petersen G, Seberg O, Davis JI, Stevenson DW. Are substitution rates and RNA editing correlated? Bmc Evolutionary Biology. 10: 349. PMID 21070620 DOI: 10.1186/1471-2148-10-349 |
0.368 |
|
| 2010 |
Freudenstein JV, Davis JI. Branch support via resampling: An empirical study Cladistics. 26: 643-656. DOI: 10.1111/J.1096-0031.2010.00304.X |
0.338 |
|
| 2009 |
Freire-Fierro A, Davis JI. A New Species Of Ribes (Grossulariaceae), Along with Notes and A Key to The Ecuadorian Species Systematic Botany. 27: 14-18. DOI: 10.1043/0363-6445-27.1.14 |
0.358 |
|
| 2009 |
Cohen JI, Davis JI. Nomenclatural changes in Lithospermum (Boraginaceae) and related taxa following a reassessment of phylogenetic relationships Brittonia. 61: 101-111. DOI: 10.1007/S12228-009-9082-Z |
0.363 |
|
| 2007 |
Rudall PJ, Sokoloff DD, Remizowa MV, Conran JG, Davis JI, Macfarlane TD, Stevenson DW. Morphology of Hydatellaceae, an anomalous aquatic family recently recognized as an early-divergent angiosperm lineage. American Journal of Botany. 94: 1073-92. PMID 21636477 DOI: 10.3732/Ajb.94.7.1073 |
0.381 |
|
| 2007 |
Davis JI, Soreng RJ. A Preliminary Phylogenetic Analysis Of The Grass Subfamily Pooideae (Poaceae), With Attention To Structural Features Of The Plastid And Nuclear Genomes, Including An Intron Loss In Gbssi Aliso. 23: 335-348. DOI: 10.5642/Aliso.20072301.27 |
0.432 |
|
| 2007 |
Duvall M, Davis J, Clark L, Noll J, Goldman D, Sánchez-Ken G. Phylogeny of the Grasses (Poaceae) Revisited Aliso. 23: 237-247. DOI: 10.5642/Aliso.20072301.18 |
0.457 |
|
| 2006 |
Fay M, Chase M, Rønsted N, Devey D, Pillon Y, Pires C, Peterson G, Seberg O, Davis J. Phylogenetics of Lilliales Aliso. 22: 599-565. DOI: 10.5642/Aliso.20062201.43 |
0.409 |
|
| 2006 |
Pires C, Maureira I, Givnish T, Systma K, Seberg O, Peterson G, Davis J, Stevenson D, Rudall P, Fay M, Chase M. Phylogeny, Genome Size, and Chromosome Evolution of Asparagales Aliso. 22: 287-304. DOI: 10.5642/Aliso.20062201.24 |
0.382 |
|
| 2006 |
Chase M, Fay M, Devey D, Maurin O, Rønsted N, Davies J, Pillon Y, Peterson G, Tamura M, Asmussen C, Hilu K, Borsch T, Davis J, Stevenson D, Pires C, et al. Multigene Analyses of Monocot Relationships Aliso. 22: 63-75. DOI: 10.5642/Aliso.20062201.06 |
0.461 |
|
| 2006 |
Peterson G, Seberg O, Davis J, Goldman D, Stevenson D, Campbell L, Michaelangeli F, Specht C, Chase M, Fay M, Pires C, Freudenstein J, Hardy C, Simmons M. Mitochondrial Data in Monocot Phylologenetics Aliso. 22: 52-62. DOI: 10.5642/Aliso.20062201.05 |
0.437 |
|
| 2006 |
Petersen G, Seberg O, Davis JI, Stevenson DW. RNA editing and phylogenetic reconstruction in two monocot mitochondrial genes Taxon. 55: 871-886. DOI: 10.2307/25065682 |
0.385 |
|
| 2006 |
Davis JI, Petersen G, Seberg O, Stevenson DW, Hardy CR, Simmons MP, Michelangeli FA, Goldman DH, Campbell LM, Specht CD, Cohen JI. Are mitochondrial genes useful for the analysis of monocot relationships? Taxon. 55: 857-870. DOI: 10.2307/25065681 |
0.409 |
|
| 2004 |
Davis JI, Stevenson DW, Petersen G, Seberg O, Campbell LM, Freudenstein JV, Goldman DH, Hardy CR, Michelangeli FA, Simmons MP, Specht CD, Vergara-Silva F, Gandolfo M. A phylogeny of the monocots, as inferred from rbcL and atpA sequence variation, and a comparison of methods for calculating jackknife and bootstrap values Systematic Botany. 29: 467-510. DOI: 10.1600/0363644041744365 |
0.431 |
|
| 2004 |
Simmons MP, Reeves A, Davis JI. Character-state space versus rate of evolution in phylogenetic inference Cladistics. 20: 191-204. DOI: 10.1111/J.1096-0031.2004.00014.X |
0.313 |
|
| 2004 |
Hardy CR, Davis JI, Stevenson DW. Floral organogenesis in Plowmanianthus (Commelinaceae) International Journal of Plant Sciences. 165: 511-519. DOI: 10.1086/386559 |
0.333 |
|
| 2003 |
Michelangeli FA, Davis JI, Stevenson DW. Phylogenetic relationships among Poaceae and related families as inferred from morphology, inversions in the plastid genome, and sequence data from the mitochondrial and plastid genomes. American Journal of Botany. 90: 93-106. PMID 21659084 DOI: 10.3732/Ajb.90.1.93 |
0.459 |
|
| 2001 |
Simmons MP, Savolainen V, Clevinger CC, Archer RH, Davis JI. Phylogeny of the Celastraceae inferred from 26S nuclear ribosomal DNA, phytochrome B, rbcL, atpB, and morphology. Molecular Phylogenetics and Evolution. 19: 353-66. PMID 11399146 DOI: 10.1006/Mpev.2001.0937 |
0.435 |
|
| 2001 |
Flores H, Davis JI. A Cladistic Analysis of Atripliceae (Chenopodiaceae) Based on Morphological Data Journal of the Torrey Botanical Society. 128: 297. DOI: 10.2307/3088719 |
0.449 |
|
| 1998 |
Davis JI, Simmons MP, Stevenson DW, Wendel JF. Data decisiveness, data quality, and incongruence in phylogenetic analysis: an example from the monocotyledons using mitochondrial atp A sequences. Systematic Biology. 47: 282-310. PMID 12064229 DOI: 10.1080/106351598260923 |
0.397 |
|
| 1998 |
Soreng RJ, Davis JI. Phylogenetics and character evolution in the grass family (Poaceae): Simultaneous analysis of morphological and Chloroplast DNA restriction site character sets Botanical Review. 64: 1-85. DOI: 10.1007/Bf02868851 |
0.47 |
|
| 1997 |
Davis JI. Evolution, evidence, and the role of species concepts in phylogenetics Systematic Botany. 22: 373. DOI: 10.2307/2419463 |
0.403 |
|
| 1995 |
Davis JI. A Phylogenetic Structure for the Monocotyledons, as Inferred from Chloroplast DNA Restriction Site Variation, and a Comparison of Measures of Clade Support Systematic Botany. 20: 503. DOI: 10.2307/2419806 |
0.386 |
|
| 1994 |
Choo MK, Soreng RJ, Davis JI. Phylogenetic relationships among Puccinellia and allied genera of Poaceae as inferred from chloroplast DNA restriction site variation American Journal of Botany. 81: 119-126. DOI: 10.1002/J.1537-2197.1994.Tb15417.X |
0.429 |
|
| 1993 |
Davis JI, Frohlich MW, Soreng RJ. Cladistic Characters and Cladogram Stability Systematic Botany. 18: 188-196. DOI: 10.2307/2419396 |
0.36 |
|
| 1993 |
Davis JI, Goldman DH. Isozyme variation and species delimitation among diploid populations of the Puccinellia nuttalliana complex (Poaceae) : character fixation and the discovery of phylogenetic species Taxon. 42: 585-599. DOI: 10.2307/1222536 |
0.373 |
|
| 1993 |
Davis JI. Character Removal As A Means For Assessing Stability Of Clades Cladistics. 9: 201-210. DOI: 10.1111/J.1096-0031.1993.Tb00218.X |
0.352 |
|
| 1993 |
Davis JI, Soreng RJ. Phylogenetic structure in the grass family (Poaceae) as inferred from chloroplast DNA restriction site variation American Journal of Botany. 80: 1444-1454. DOI: 10.1002/J.1537-2197.1993.Tb15390.X |
0.329 |
|
| 1992 |
Doyle JJ, Davis JI, Soreng RJ, Garvin D, Anderson MJ. Chloroplast DNA inversions and the origin of the grass family (Poaceae). Proceedings of the National Academy of Sciences of the United States of America. 89: 7722-6. PMID 1502190 DOI: 10.1073/Pnas.89.16.7722 |
0.439 |
|
| 1992 |
Davis JI, Nixon KC. Populations, Genetic Variation, and the Delimitation of Phylogenetic Species Systematic Biology. 41: 421-435. DOI: 10.1093/Sysbio/41.4.421 |
0.414 |
|
| 1991 |
Davis JI, Manos PS. Isozyme Variation and Species Delimitation in the Puccinellia nuttalliana Complex (Poaceae): An Application of the Phylogenetic Species Concept Systematic Botany. 16: 431. DOI: 10.2307/2419335 |
0.36 |
|
| 1990 |
Soreng RJ, Davis JI, Doyle JJ. A phylogenetic analysis of chloroplast DNA restriction site variation in Poaceae subfam. Pooideae Plant Systematics and Evolution. 172: 83-97. DOI: 10.1007/Bf00937800 |
0.388 |
|
| 1989 |
DiMichele WA, Davis JI, Olmstead RG. ORIGINS OF HETEROSPORY AND THE SEED HABIT: THE ROLE OF HETEROCHRONY Taxon. 38: 1-11. DOI: 10.2307/1220881 |
0.352 |
|
| 1988 |
Davis JI. Genetic and environmental contributions to multivariate morphological pattern in Puccinellia (Poaceae) Botany. 66: 2436-2444. DOI: 10.1139/B88-331 |
0.311 |
|
| 1985 |
Davis JI, Gilmartin AJ, Herbarium O. Morphological Variation and Speciation Systematic Botany. 10: 417-425. DOI: 10.2307/2419135 |
0.386 |
|
| 1983 |
Davis JI. Phenotypic plasticity and the selection of taxonomic characters in Puccinellia (Poaceae) Systematic Botany. 8: 341-353. DOI: 10.2307/2418354 |
0.367 |
|
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