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David A. McClellan, Ph.D. - Publications

Affiliations: 
Bigelow Laboratory for Ocean Sciences, Boothbay, ME, United States 
Area:
Evolutionary bioinformatics
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18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2013 McClellan DA. Directional Darwinian Selection in proteins. Bmc Bioinformatics. 14: S6. PMID 24267049 DOI: 10.1186/1471-2105-14-S13-S6  0.384
2012 McClellan DA. Detecting molecular selection on single amino acid replacements. International Journal of Bioinformatics Research and Applications. 8: 67-80. PMID 22450271 DOI: 10.1504/Ijbra.2012.045977  0.379
2010 McClellan DA, Ellison DD. Assessing and improving the accuracy of detecting protein adaptation with the TreeSAAP analytical software. International Journal of Bioinformatics Research and Applications. 6: 120-33. PMID 20223735 DOI: 10.1504/Ijbra.2010.032116  0.394
2009 Beckstead WA, Ebbert MT, Rowe MJ, McClellan DA. Evolutionary pressure on mitochondrial cytochrome b is consistent with a role of CytbI7T affecting longevity during caloric restriction. Plos One. 4: e5836. PMID 19503808 DOI: 10.1371/Journal.Pone.0005836  0.328
2008 Lewis-Rogers N, McClellan DA, Crandall KA. The evolution of foot-and-mouth disease virus: impacts of recombination and selection. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 8: 786-98. PMID 18718559 DOI: 10.1016/J.Meegid.2008.07.009  0.417
2007 Chamala S, Beckstead WA, Rowe MJ, McClellan DA. Evolutionary selective pressure on three mitochondrial SNPs is consistent with their influence on metabolic efficiency in Pima Indians. International Journal of Bioinformatics Research and Applications. 3: 504-22. PMID 18048316 DOI: 10.1504/Ijbra.2007.015418  0.362
2007 Ebbert MT, Beckstead WA, O'Connor TD, Clement MJ, McClellan DA. Pharmacogenomics: analysing SNPs in the CYP2D6 gene using amino acid properties. International Journal of Bioinformatics Research and Applications. 3: 471-9. PMID 18048313 DOI: 10.1504/Ijbra.2007.015415  0.378
2007 Baer KK, McClellan DA. Molecular coevolution of the vertebrate cytochrome c(1) and Rieske iron sulphur protein in the cytochrome bc(1) complex. International Journal of Bioinformatics Research and Applications. 3: 456-70. PMID 18048312 DOI: 10.1504/Ijbra.2007.015414  0.338
2007 Benavides E, Baum R, McClellan D, Sites JW. Molecular phylogenetics of the lizard genus Microlophus (squamata:tropiduridae): aligning and retrieving indel signal from nuclear introns. Systematic Biology. 56: 776-97. PMID 17907054 DOI: 10.1080/10635150701618527  0.369
2007 Carroll H, Beckstead W, O'Connor T, Ebbert M, Clement M, Snell Q, McClellan D. DNA reference alignment benchmarks based on tertiary structure of encoded proteins. Bioinformatics (Oxford, England). 23: 2648-9. PMID 17686799 DOI: 10.1093/Bioinformatics/Btm389  0.329
2007 Porter ML, Cronin TW, McClellan DA, Crandall KA. Molecular characterization of crustacean visual pigments and the evolution of pancrustacean opsins. Molecular Biology and Evolution. 24: 253-68. PMID 17053049 DOI: 10.1093/Molbev/Msl152  0.393
2006 Crandall KA, Pérez-Losada M, Christensen RG, McClellan DA, Viscidi RP. Phylogenomics and molecular evolution of polyomaviruses. Advances in Experimental Medicine and Biology. 577: 46-59. PMID 16626026 DOI: 10.1007/0-387-32957-9_3  0.334
2005 Edmondson AC, Song D, Alvarez LA, Wall MK, Almond D, McClellan DA, Maxwell A, Nielsen BL. Characterization of a mitochondrially targeted single-stranded DNA-binding protein in Arabidopsis thaliana. Molecular Genetics and Genomics : Mgg. 273: 115-22. PMID 15744502 DOI: 10.1007/S00438-004-1106-5  0.361
2005 McClellan DA, Palfreyman EJ, Smith MJ, Moss JL, Christensen RG, Sailsbery JK. Physicochemical evolution and molecular adaptation of the cetacean and artiodactyl cytochrome b proteins. Molecular Biology and Evolution. 22: 437-55. PMID 15509727 DOI: 10.1093/Molbev/Msi028  0.442
2004 McClellan DA, Whiting DG, Christensen R, Sailsbery J. Genetic codes as evolutionary filters: subtle differences in the structure of genetic codes result in significant differences in patterns of nucleotide substitution. Journal of Theoretical Biology. 226: 393-400. PMID 14759645 DOI: 10.1016/J.Jtbi.2003.09.019  0.302
2003 Woolley S, Johnson J, Smith MJ, Crandall KA, McClellan DA. TreeSAAP: selection on amino acid properties using phylogenetic trees. Bioinformatics (Oxford, England). 19: 671-2. PMID 12651734 DOI: 10.1093/Bioinformatics/Btg043  0.391
2001 McClellan DA, McCracken KG. Estimating the influence of selection on the variable amino acid sites of the cytochrome B protein functional domains. Molecular Biology and Evolution. 18: 917-25. PMID 11371579 DOI: 10.1093/Oxfordjournals.Molbev.A003892  0.433
1999 McCracken KG, Harshman J, McClellan DA, Afton AD. Data set incongruence and correlated character evolution: an example of functional convergence in the hind-limbs of stifftail diving ducks. Systematic Biology. 48: 683-714. PMID 12066296 DOI: 10.1080/106351599259979  0.357
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