Joshua LaBaer - Publications

Affiliations: 
Biological Design Arizona State University, Tempe, AZ, United States 
Area:
Bioinformatics Biology, Molecular Biology, Physiology Biology

143 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Wang D, Yang D, Yang L, Diao L, Zhang Y, Li Y, Wang H, Ren J, Cheng L, Tan Q, Zhang R, Han X, Zhang X, Wang B, Li D, ... ... LaBaer J, et al. Human Autoantigen Atlas: Searching for the Hallmarks of Autoantigens. Journal of Proteome Research. PMID 37183442 DOI: 10.1021/acs.jproteome.2c00799  0.305
2021 Song L, Wiktor P, Qiu J, LaBaer J. Identification of Antibody Biomarker Using High-Density Nucleic Acid Programmable Protein Array. Methods in Molecular Biology (Clifton, N.J.). 2344: 47-64. PMID 34115351 DOI: 10.1007/978-1-0716-1562-1_4  0.326
2021 Barderas R, Srivastava S, LaBaer J. Protein Microarray-Based Proteomics for Disease Analysis. Methods in Molecular Biology (Clifton, N.J.). 2344: 3-6. PMID 34115348 DOI: 10.1007/978-1-0716-1562-1_1  0.363
2021 González-González M, Sayagués JM, Muñoz-Bellvís L, Pedreira CE, de Campos MLR, García J, Alcázar JA, Braz PF, Galves BL, González LM, Bengoechea O, Abad MDM, Cruz JJ, Bellido L, Fonseca E, ... ... LaBaer J, et al. Tracking the Antibody Immunome in Sporadic Colorectal Cancer by Using Antigen Self-Assembled Protein Arrays. Cancers. 13. PMID 34072782 DOI: 10.3390/cancers13112718  0.318
2021 Pham T, Liao R, Labaer J, Guo J. Multiplexed In Situ Protein Profiling with High-Performance Cleavable Fluorescent Tyramide. Molecules (Basel, Switzerland). 26. PMID 33921211 DOI: 10.3390/molecules26082206  0.324
2020 Tang Y, Saul J, Nagaratnam N, Martin-Garcia JM, Fromme P, Qiu J, LaBaer J. Construction of gateway-compatible baculovirus expression vectors for high-throughput protein expression and in vivo microcrystal screening. Scientific Reports. 10: 13323. PMID 32770037 DOI: 10.1038/S41598-020-70163-2  0.446
2020 Hingorani P, Dinu V, Zhang X, Lei H, Shern JF, Park J, Steel J, Rauf F, Parham D, Gastier-Foster J, Hall D, Hawkins DS, Skapek SX, Labaer J, McEachron TA. Transcriptome analysis of desmoplastic small round cell tumors identifies actionable therapeutic targets: a report from the Children's Oncology Group. Scientific Reports. 10: 12318. PMID 32703985 DOI: 10.1038/S41598-020-69015-W  0.326
2020 Liao R, Pham T, Mastroeni D, Coleman PD, Labaer J, Guo J. Highly Sensitive and Multiplexed In-Situ Protein Profiling with Cleavable Fluorescent Streptavidin. Cells. 9. PMID 32244728 DOI: 10.3390/Cells9040852  0.43
2019 Festa F, Labaer J. Kinase Inhibitor Screening In Self-assembled Human Protein Microarrays. Journal of Visualized Experiments. 2019. PMID 31710025 DOI: 10.3791/59886  0.335
2019 Pflughoeft KJ, Mash M, Hasenkampf NR, Jacobs MB, Tardo AC, Magee DM, Song L, LaBaer J, Philipp MT, Embers ME, AuCoin DP. Multi-platform Approach for Microbial Biomarker Identification Using as a Model. Frontiers in Cellular and Infection Microbiology. 9: 179. PMID 31245298 DOI: 10.3389/Fcimb.2019.00179  0.346
2018 Paik YK, Lane L, Kawamura T, Chen YJ, Cho JY, LaBaer J, Yoo JS, Domont GB, Corrales F, Omenn GS, Archakov A, Encarnación-Guevara S, Liu S, Salekdeh GH, Cho JY, et al. Launching the C-HPP pilot project for functional characterization of identified proteins with no known function. Journal of Proteome Research. PMID 30269496 DOI: 10.1021/Acs.Jproteome.8B00383  0.438
2018 Arévalo-Pinzón G, González-González M, Suárez CF, Curtidor H, Carabias-Sánchez J, Muro A, LaBaer J, Patarroyo MA, Fuentes M. Self-assembling functional programmable protein array for studying protein-protein interactions in malaria parasites. Malaria Journal. 17: 270. PMID 30016987 DOI: 10.1186/S12936-018-2414-2  0.43
2018 Yu X, Noll RR, Romero Dueñas BP, Allgood SC, Barker K, Caplan JL, Machner MP, LaBaer J, Qiu J, Neunuebel MR. Legionella effector AnkX interacts with host nuclear protein PLEKHN1. Bmc Microbiology. 18: 5. PMID 29433439 DOI: 10.1186/S12866-017-1147-7  0.339
2018 Rauf F, Festa F, Park JG, Magee M, Eaton S, Rinaldi C, Betanzos CM, Gonzalez-Malerva L, LaBaer J. Ibrutinib inhibition of ERBB4 reduces cell growth in a WNT5A-dependent manner. Oncogene. PMID 29398709 DOI: 10.1038/S41388-017-0079-X  0.308
2018 Encina MC, Calamia V, Picchi F, VanDuin J, Qiu J, Romero CR, LaBaer J, Blanco FJ. OP0317 Screening of an autoantibody signature of early knee osteoarthritis: data from the osteoarthritis initiative Annals of the Rheumatic Diseases. 77: 205-205. DOI: 10.1136/Annrheumdis-2018-Eular.4522  0.391
2017 Venkatesh A, Gil C, Fuentes M, LaBaer J, Srivastava S. A Perspective on Proteomics of Infectious Diseases. Proteomics. Clinical Applications. PMID 29282898 DOI: 10.1002/Prca.201700139  0.352
2017 Moremen KW, Ramiah A, Stuart M, Steel J, Meng L, Forouhar F, Moniz HA, Gahlay G, Gao Z, Chapla D, Wang S, Yang JY, Prabhakar PK, Johnson R, Rosa MD, ... ... LaBaer J, et al. Expression system for structural and functional studies of human glycosylation enzymes. Nature Chemical Biology. PMID 29251719 DOI: 10.1038/Nchembio.2539  0.303
2017 Yu X, Petritis B, Duan H, Xu D, LaBaer J. Advances in cell-free protein array methods. Expert Review of Proteomics. 1-11. PMID 29214870 DOI: 10.1080/14789450.2018.1415146  0.458
2017 Yu X, Song L, Petritis B, Bian X, Wang H, Viloria J, Park J, Bui H, Li H, Wang J, Liu L, Yang L, Duan H, McMurray DN, Achkar JM, ... ... LaBaer J, et al. Multiplexed Nucleic Acid Programmable Protein Arrays. Theranostics. 7: 4057-4070. PMID 29109798 DOI: 10.7150/Thno.20151  0.453
2017 Tang Y, Qiu J, Machner M, LaBaer J. Discovering Protein-Protein Interactions Using Nucleic Acid Programmable Protein Arrays. Current Protocols in Cell Biology. 74: 15.21.1-15.21.14. PMID 28256722 DOI: 10.1002/Cpcb.14  0.452
2017 Song L, Wallstrom G, Yu X, Hopper M, Van Duine J, Steel J, Park J, Wiktor P, Khan P, Brunner A, Wilson D, Jenny-Avital ER, Qiu J, LaBaer J, Magee DM, et al. Identification of antibody targets for tuberculosis serology using high-density nucleic acid programmable protein arrays. Molecular & Cellular Proteomics : McP. PMID 28223349 DOI: 10.1074/Mcp.M116.065953  0.329
2017 Wang H, Demirkan G, Bian X, Wallstrom G, Barker K, Karthikeyan K, Tang Y, Pasha SF, Leighton JA, Qiu J, LaBaer J. Identification of antibody against SNRPB, small nuclear ribonucleoprotein-associated proteins B and B', as an autoantibody marker in Crohn's disease using an immunoproteomics approach. Journal of Crohn's & Colitis. PMID 28204086 DOI: 10.1093/Ecco-Jcc/Jjx019  0.363
2017 Pal A, Park J, Gonzalez-Malerva L, Eaton S, LaBaer J. Abstract P1-08-05: Discovering drug targets for aggressive breast cancer with TP53 missense mutations by a genome-wide screen Cancer Research. 77. DOI: 10.1158/1538-7445.Sabcs16-P1-08-05  0.311
2016 Wang D, Yang L, Zhang P, LaBaer J, Hermjakob H, Li D, Yu X. AAgAtlas 1.0: a human autoantigen database. Nucleic Acids Research. PMID 27924021 DOI: 10.1093/Nar/Gkw946  0.334
2016 Bian X, Wasserfall C, Wallstrom G, Wang J, Wang H, Barker K, Schatz D, Atkinson M, Qiu J, LaBaer J. Tracking the Antibody Immunome in Type 1 Diabetes Using Protein Arrays. Journal of Proteome Research. PMID 27690455 DOI: 10.1021/Acs.Jproteome.6B00354  0.402
2016 Yazaki J, Galli M, Kim AY, Nito K, Aleman F, Chang KN, Carvunis AR, Quan R, Nguyen H, Song L, Alvarez JM, Huang SC, Chen H, Ramachandran N, Altmann S, ... ... LaBaer J, et al. Mapping transcription factor interactome networks using HaloTag protein arrays. Proceedings of the National Academy of Sciences of the United States of America. PMID 27357687 DOI: 10.1073/Pnas.1603229113  0.374
2016 Karthikeyan K, Barker K, Tang Y, Kahn P, Wiktor P, Brunner A, Knabben V, Takulapalli B, Buckner J, Nepom G, LaBaer J, Qiu J. A contra capture protein array platform for studying post-translationally modified auto-antigenomes. Molecular & Cellular Proteomics : McP. PMID 27141097 DOI: 10.1074/Mcp.M115.057661  0.382
2016 Yu X, Petritis B, LaBaer J. Advancing translational research with next generation protein microarrays. Proteomics. PMID 26749402 DOI: 10.1002/Pmic.201500374  0.446
2016 Wang J, Figueroa J, Wallstrom G, Barker K, Park J, Demirkan G, Lissowska J, Anderson K, Qiu J, LaBaer J. Abstract P5-02-04: Plasma autoantibodies associated with basal-like breast cancers Cancer Research. 76. DOI: 10.1158/1538-7445.Sabcs15-P5-02-04  0.333
2016 LoCascio C, Kupp R, Singh S, Szeto E, Loo V, Rauf F, Derogatis A, Labaer J, Sanai N, Mehta S. CSIG-11. ROLE OF OLIG2 PARTNER PROTEINS IN GLIOBLASTOMA Neuro-Oncology. 18: vi43-vi43. DOI: 10.1093/Neuonc/Now212.172  0.384
2016 Yu X, Petritis B, LaBaer J. Outside front cover: Advancing translational research with next‐generation protein microarrays Proteomics. 16. DOI: 10.1002/Pmic.201670080  0.38
2015 Díez P, González-González M, Lourido L, Dégano RM, Ibarrola N, Casado-Vela J, LaBaer J, Fuentes M. NAPPA as a Real New Method for Protein Microarray Generation. Microarrays (Basel, Switzerland). 4: 214-27. PMID 27600221 DOI: 10.3390/Microarrays4020214  0.445
2015 Gong Z, Martin-Garcia JM, Daskalova SM, Craciunescu FM, Song L, Dörner K, Hansen DT, Yang JH, LaBaer J, Hogue BG, Mor TS, Fromme P. Biophysical Characterization of a Vaccine Candidate against HIV-1: The Transmembrane and Membrane Proximal Domains of HIV-1 gp41 as a Maltose Binding Protein Fusion. Plos One. 10: e0136507. PMID 26295457 DOI: 10.1371/Journal.Pone.0136507  0.347
2015 Díez P, Droste C, Dégano RM, González-Muñoz M, Ibarrola N, Pérez-Andrés M, Garin-Muga A, Segura V, Marko-Varga G, LaBaer J, Orfao A, Corrales FJ, De Las Rivas J, Fuentes M. Integration of Proteomics and Transcriptomics Data Sets for the Analysis of a Lymphoma B-Cell Line in the Context of the Chromosome-Centric Human Proteome Project. Journal of Proteome Research. 14: 3530-40. PMID 26216070 DOI: 10.1021/Acs.Jproteome.5B00474  0.41
2015 Horvatovich P, Vegvari A, Saul J, Park JG, Qiu J, Syring M, Pirrotte P, Petritis K, Tegeler TJ, Aziz M, Fuentes M, Diez P, Gonzalez-Gonzalez M, Ibarrola N, Droste C, ... ... LaBaer J, et al. In vitro transcription translation system: a versatile tool in the search for missing proteins. Journal of Proteome Research. PMID 26155874 DOI: 10.1021/Acs.Jproteome.5B00486  0.432
2015 Olia AS, Barker K, McCullough CE, Tang HY, Speicher DW, Qiu J, LaBaer J, Marmorstein R. Nonenzymatic Protein Acetylation Detected by NAPPA Protein Arrays. Acs Chemical Biology. PMID 26083674 DOI: 10.1021/Acschembio.5B00342  0.413
2015 Yu X, LaBaer J. High-throughput identification of proteins with AMPylation using self-assembled human protein (NAPPA) microarrays. Nature Protocols. 10: 756-67. PMID 25881200 DOI: 10.1038/Nprot.2015.044  0.431
2015 Park J, Throop AL, LaBaer J. Site-specific recombinational cloning using gateway and in-fusion cloning schemes. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. 110: 3.20.1-3.20.23. PMID 25827088 DOI: 10.1002/0471142727.Mb0320S110  0.362
2015 Bian X, Wiktor P, Kahn P, Brunner A, Khela A, Karthikeyan K, Barker K, Yu X, Magee M, Wasserfall CH, Gibson D, Rooney ME, Qiu J, LaBaer J. Antiviral antibody profiling by high-density protein arrays. Proteomics. 15: 2136-45. PMID 25758251 DOI: 10.1002/Pmic.201400612  0.38
2015 Yu X, Decker KB, Barker K, Neunuebel MR, Saul J, Graves M, Westcott N, Hang H, LaBaer J, Qiu J, Machner MP. Host-pathogen interaction profiling using self-assembling human protein arrays. Journal of Proteome Research. 14: 1920-36. PMID 25739981 DOI: 10.1021/Pr5013015  0.427
2015 Nilsson CL, Mostovenko E, Lichti CF, Ruggles K, Fenyö D, Rosenbloom KR, Hancock WS, Paik YK, Omenn GS, LaBaer J, Kroes RA, Uhlén M, Hober S, Végvári Á, Andrén PE, et al. Use of ENCODE resources to characterize novel proteoforms and missing proteins in the human proteome. Journal of Proteome Research. 14: 603-8. PMID 25369122 DOI: 10.1021/Pr500564Q  0.438
2015 Anderson KS, Cramer DW, Sibani S, Wallstrom G, Wong J, Park J, Qiu J, Vitonis A, LaBaer J. Autoantibody signature for the serologic detection of ovarian cancer. Journal of Proteome Research. 14: 578-86. PMID 25365139 DOI: 10.1021/Pr500908N  0.341
2015 Anderson KS, Pepe M, Marks J, Engstrom P, Patriotis C, Zangar R, Skates S, Lampe P, LaBaer J, Li CI. Abstract P4-02-05: A blinded multicenter phase II study of a panel of plasma biomarkers for the detection of triple negative breast cancer Cancer Research. 75. DOI: 10.1158/1538-7445.Sabcs14-P4-02-05  0.311
2015 Kupp R, Cascio CL, Rauf F, Meijer D, Stiles CD, Sanai N, LaBaer J, Mehta SV. Abstract B20: Targeting Olig2 co-regulators for malignant glioma therapy Brain. 75. DOI: 10.1158/1538-7445.Brain15-B20  0.359
2015 Katchman BA, Alam R, Field MS, Viloria J, Wallstrom G, LaBaer J, Engstrom P, Anderson KS. Abstract 1318: A protein microarray signature of autoantibody biomarkers for the detection of HER2+ breast cancers Cancer Research. 75: 1318-1318. DOI: 10.1158/1538-7445.Am2015-1318  0.362
2014 Thongboonkerd V, LaBaer J, Domont GB. Recent advances of proteomics applied to human diseases. Journal of Proteome Research. 13: 4493-6. PMID 25377741 DOI: 10.1021/Pr501038G  0.359
2014 Woolery AR, Yu X, LaBaer J, Orth K. AMPylation of Rho GTPases subverts multiple host signaling processes. The Journal of Biological Chemistry. 289: 32977-88. PMID 25301945 DOI: 10.1074/Jbc.M114.601310  0.325
2014 Gong Z, Kessans SA, Song L, Dörner K, Lee HH, Meador LR, LaBaer J, Hogue BG, Mor TS, Fromme P. Recombinant expression, purification, and biophysical characterization of the transmembrane and membrane proximal domains of HIV-1 gp41. Protein Science : a Publication of the Protein Society. 23: 1607-18. PMID 25155369 DOI: 10.1002/Pro.2540  0.301
2014 Yu X, Woolery AR, Luong P, Hao YH, Grammel M, Westcott N, Park J, Wang J, Bian X, Demirkan G, Hang HC, Orth K, LaBaer J. Copper-catalyzed azide-alkyne cycloaddition (click chemistry)-based detection of global pathogen-host AMPylation on self-assembled human protein microarrays. Molecular & Cellular Proteomics : McP. 13: 3164-76. PMID 25073739 DOI: 10.1074/Mcp.M114.041103  0.364
2014 Yu X, Bian X, Throop A, Song L, Moral LD, Park J, Seiler C, Fiacco M, Steel J, Hunter P, Saul J, Wang J, Qiu J, Pipas JM, LaBaer J. Exploration of panviral proteome: high-throughput cloning and functional implications in virus-host interactions. Theranostics. 4: 808-22. PMID 24955142 DOI: 10.7150/Thno.8255  0.352
2014 Saul J, Petritis B, Sau S, Rauf F, Gaskin M, Ober-Reynolds B, Mineyev I, Magee M, Chaput J, Qiu J, LaBaer J. Development of a full-length human protein production pipeline. Protein Science : a Publication of the Protein Society. 23: 1123-35. PMID 24806540 DOI: 10.1002/Pro.2484  0.433
2014 Seiler CY, Park JG, Sharma A, Hunter P, Surapaneni P, Sedillo C, Field J, Algar R, Price A, Steel J, Throop A, Fiacco M, LaBaer J. DNASU plasmid and PSI:Biology-Materials repositories: resources to accelerate biological research. Nucleic Acids Research. 42: D1253-60. PMID 24225319 DOI: 10.1093/Nar/Gkt1060  0.364
2014 Demirkan G, Soderberg L, Wallstrom G, Szeto E, Barker K, Wang J, LaBaer J, Lindor NM, Qiu J. Abstract 887: Proteome scale identification of autoantibody biomarkers in colorectal cancer Cancer Research. 74: 887-887. DOI: 10.1158/1538-7445.Am2014-887  0.363
2014 Katchman BA, Alam R, Wallstrom G, LaBaer J, Hollingsworth MA, Cramer DW, Anderson KS. Abstract 881: Identification of autoantibody biomarkers to wild-type and mutant p53 in pancreatic and ovarian cancer Cancer Research. 74: 881-881. DOI: 10.1158/1538-7445.Am2014-881  0.33
2014 Wang J, Figueroa JD, Wallstrom G, Sampson J, Garcia EM, Steel J, Park J, Anderson KS, Brinton L, Garcia-Closas M, Lissowska J, Sherman ME, Qiu J, LaBaer J. Abstract 874: Autoantibody biomarker discovery in basal-like breast cancer using nucleic acid programmable protein array Cancer Research. 74: 874-874. DOI: 10.1158/1538-7445.Am2014-874  0.402
2014 Gibson DS, Qiu J, Finnegan S, Mendoza EA, Barker K, Allister CM, Labaer J, Rooney M. Autoantibodies Predictive of Uveitis in Juvenile Idiopathic Arthritis (Aperture): a proof of concept study Rheumatology. 53. DOI: 10.1093/Rheumatology/Keu268.003  0.346
2013 Miersch S, Bian X, Wallstrom G, Sibani S, Logvinenko T, Wasserfall CH, Schatz D, Atkinson M, Qiu J, LaBaer J. Serological autoantibody profiling of type 1 diabetes by protein arrays. Journal of Proteomics. 94: 486-96. PMID 24148850 DOI: 10.1016/J.Jprot.2013.10.018  0.401
2013 Spera R, Festa F, Bragazzi NL, Pechkova E, LaBaer J, Nicolini C. Conductometric monitoring of protein-protein interactions. Journal of Proteome Research. 12: 5535-47. PMID 24106799 DOI: 10.1021/Pr400445V  0.405
2013 Skates SJ, Gillette MA, LaBaer J, Carr SA, Anderson L, Liebler DC, Ransohoff D, Rifai N, Kondratovich M, Težak Ž, Mansfield E, Oberg AL, Wright I, Barnes G, Gail M, et al. Statistical design for biospecimen cohort size in proteomics-based biomarker discovery and verification studies. Journal of Proteome Research. 12: 5383-94. PMID 24063748 DOI: 10.1021/Pr400132J  0.362
2013 Yu X, Wallstrom G, Magee DM, Qiu J, Mendoza DE, Wang J, Bian X, Graves M, LaBaer J. Quantifying antibody binding on protein microarrays using microarray nonlinear calibration. Biotechniques. 54: 257-64. PMID 23662896 DOI: 10.2144/000114028  0.319
2013 Festa F, Steel J, Bian X, Labaer J. High-throughput cloning and expression library creation for functional proteomics. Proteomics. 13: 1381-99. PMID 23457047 DOI: 10.1002/Pmic.201200456  0.43
2013 Lee JR, Magee DM, Gaster RS, LaBaer J, Wang SX. Emerging protein array technologies for proteomics. Expert Review of Proteomics. 10: 65-75. PMID 23414360 DOI: 10.1586/Epr.12.67  0.421
2013 Festa F, Rollins SM, Vattem K, Hathaway M, Lorenz P, Mendoza EA, Yu X, Qiu J, Kilmer G, Jensen P, Webb B, Ryan ET, LaBaer J. Robust microarray production of freshly expressed proteins in a human milieu. Proteomics. Clinical Applications. 7: 372-7. PMID 23027544 DOI: 10.1002/Prca.201200063  0.407
2013 Wang J, Barker K, Steel J, Park J, Saul J, Festa F, Wallstrom G, Yu X, Bian X, Anderson KS, Figueroa JD, LaBaer J, Qiu J. A versatile protein microarray platform enabling antibody profiling against denatured proteins. Proteomics. Clinical Applications. 7: 378-83. PMID 23027520 DOI: 10.1002/Prca.201200062  0.43
2013 Gonzalez-Malerva LG, Eaton S, Pal A, Chow D, Guzman M, Amouzougan E, Yin H, Park J, Anderson K, LaBaer J. Abstract C299: Functional differences of mutant p53's expressed in MCF10A cells and their contribution to breast carcinogenesis. Molecular Cancer Therapeutics. 12. DOI: 10.1158/1535-7163.Targ-13-C299  0.326
2012 Manzano-Román R, Díaz-Martín V, González-González M, Matarraz S, Álvarez-Prado AF, LaBaer J, Orfao A, Pérez-Sánchez R, Fuentes M. Self-assembled protein arrays from an Ornithodoros moubata salivary gland expression library. Journal of Proteome Research. 11: 5972-82. PMID 23140423 DOI: 10.1021/Pr300696H  0.457
2012 Takulapalli BR, Qiu J, Magee DM, Kahn P, Brunner A, Barker K, Means S, Miersch S, Bian X, Mendoza A, Festa F, Syal K, Park JG, LaBaer J, Wiktor P. High density diffusion-free nanowell arrays. Journal of Proteome Research. 11: 4382-91. PMID 22742968 DOI: 10.1021/Pr300467Q  0.413
2012 Gibson DS, Qiu J, Mendoza EA, Barker K, Rooney ME, LaBaer J. Circulating and synovial antibody profiling of juvenile arthritis patients by nucleic acid programmable protein arrays. Arthritis Research & Therapy. 14: R77. PMID 22510425 DOI: 10.1186/Ar3800  0.302
2012 Wright C, Sibani S, Trudgian D, Fischer R, Kessler B, LaBaer J, Bowness P. Detection of multiple autoantibodies in patients with ankylosing spondylitis using nucleic acid programmable protein arrays. Molecular & Cellular Proteomics : McP. 11: M9.00384. PMID 22311593 DOI: 10.1074/Mcp.M9.00384  0.315
2012 Festa F, Mendoza EA, Vatten K, Labaer J. Abstract LB-414: Study of the kinase activity using NAPPA protein microarray expressed with Human IVTT system Cancer Research. 72. DOI: 10.1158/1538-7445.Am2012-Lb-414  0.361
2012 Cormier CY, Park J, Fiacco M, Steel J, Kramer J, LaBaer J. Abstract 3973: Developing a public resource for structural biology and cancer pathway plasmids Cancer Research. 72: 3973-3973. DOI: 10.1158/1538-7445.Am2012-3973  0.394
2011 Qiu J, LaBaer J. Nucleic acid programmable protein array a just-in-time multiplexed protein expression and purification platform. Methods in Enzymology. 500: 151-63. PMID 21943897 DOI: 10.1016/B978-0-12-385118-5.00009-8  0.461
2011 Spera R, Labaer J, Nicolini C. MALDI-TOF characterization of NAPPA-generated proteins. Journal of Mass Spectrometry : Jms. 46: 960-5. PMID 21915962 DOI: 10.1002/Jms.1976  0.399
2011 Link AJ, LaBaer J. Trichloroacetic acid (TCA) precipitation of proteins. Cold Spring Harbor Protocols. 2011: 993-4. PMID 21807853 DOI: 10.1101/Pdb.Prot5651  0.34
2011 Miersch S, LaBaer J. Nucleic Acid programmable protein arrays: versatile tools for array-based functional protein studies. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit27.2. PMID 21488044 DOI: 10.1002/0471140864.Ps2702S64  0.464
2011 Sibani S, LaBaer J. Immunoprofiling using NAPPA protein microarrays. Methods in Molecular Biology (Clifton, N.J.). 723: 149-61. PMID 21370064 DOI: 10.1007/978-1-61779-043-0_10  0.427
2011 Cormier CY, Park JG, Fiacco M, Steel J, Hunter P, Kramer J, Singla R, LaBaer J. PSI:Biology-materials repository: a biologist's resource for protein expression plasmids. Journal of Structural and Functional Genomics. 12: 55-62. PMID 21360289 DOI: 10.1007/S10969-011-9100-8  0.412
2011 Link AJ, LaBaer J. Solution protein digest. Cold Spring Harbor Protocols. 2011: pdb.prot5569. PMID 21285269 DOI: 10.1101/Pdb.Prot5569  0.329
2011 Anderson KS, Sibani S, Wallstrom G, Qiu J, Mendoza EA, Raphael J, Hainsworth E, Montor WR, Wong J, Park JG, Lokko N, Logvinenko T, Ramachandran N, Godwin AK, Marks J, ... ... Labaer J, et al. Protein microarray signature of autoantibody biomarkers for the early detection of breast cancer. Journal of Proteome Research. 10: 85-96. PMID 20977275 DOI: 10.1021/Pr100686B  0.389
2011 Cormier C, Steel J, Fiacco M, Park J, Kramer J, LaBaer J. PSI:Biology-Materials Repository: Developing a Public Resource for Structural Biology Plasmids Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.482  0.369
2010 Ceroni A, Sibani S, Baiker A, Pothineni VR, Bailer SM, LaBaer J, Haas J, Campbell CJ. Systematic analysis of the IgG antibody immune response against varicella zoster virus (VZV) using a self-assembled protein microarray. Molecular Biosystems. 6: 1604-10. PMID 20514382 DOI: 10.1039/C003798B  0.406
2010 Ramirez AB, Loch CM, Zhang Y, Liu Y, Wang X, Wayner EA, Sargent JE, Sibani S, Hainsworth E, Mendoza EA, Eugene R, Labaer J, Urban ND, McIntosh MW, Lampe PD. Use of a single-chain antibody library for ovarian cancer biomarker discovery. Molecular & Cellular Proteomics : McP. 9: 1449-60. PMID 20467042 DOI: 10.1074/Mcp.M900496-Mcp200  0.35
2010 Cormier CY, Mohr SE, Zuo D, Hu Y, Rolfs A, Kramer J, Taycher E, Kelley F, Fiacco M, Turnbull G, LaBaer J. Protein Structure Initiative Material Repository: an open shared public resource of structural genomics plasmids for the biological community. Nucleic Acids Research. 38: D743-9. PMID 19906724 DOI: 10.1093/Nar/Gkp999  0.392
2010 Kouranov A, Westbrook J, Gabanyi M, Tao Y, Shah R, Schwede T, Arnold K, Kiefer F, Bordoli L, Adams P, Carter L, Minor W, Nair R, LaBaer J, Berman HM. How to use the PSI Structural Genomics Knowledgebase to Enable Research Biophysical Journal. 98: 250a. DOI: 10.1016/J.Bpj.2009.12.1360  0.363
2010 Cormier C, Chin J, LaBaer J. Protein Structure Initiative Material Repository (PSI-MR): A Resource of Structural Genomics Plasmids for the Biological Community Biophysical Journal. 98. DOI: 10.1016/J.Bpj.2009.12.1359  0.387
2009 Link AJ, Labaer J. In-gel trypsin digest of gel-fractionated proteins. Cold Spring Harbor Protocols. 2009: pdb.prot5110. PMID 20147065 DOI: 10.1101/Pdb.Prot5110  0.322
2009 Montor WR, Huang J, Hu Y, Hainsworth E, Lynch S, Kronish JW, Ordonez CL, Logvinenko T, Lory S, LaBaer J. Genome-wide study of Pseudomonas aeruginosa outer membrane protein immunogenicity using self-assembling protein microarrays. Infection and Immunity. 77: 4877-86. PMID 19737893 DOI: 10.1128/Iai.00698-09  0.412
2009 Wong J, Sibani S, Lokko NN, LaBaer J, Anderson KS. Rapid detection of antibodies in sera using multiplexed self-assembling bead arrays. Journal of Immunological Methods. 350: 171-82. PMID 19732778 DOI: 10.1016/J.Jim.2009.08.013  0.362
2009 Thanawastien A, Montor WR, Labaer J, Mekalanos JJ, Yoon SS. Vibrio cholerae proteome-wide screen for immunostimulatory proteins identifies phosphatidylserine decarboxylase as a novel Toll-like receptor 4 agonist. Plos Pathogens. 5: e1000556. PMID 19696891 DOI: 10.1371/Journal.Ppat.1000556  0.325
2009 Zhang L, Villa NY, Rahman MM, Smallwood S, Shattuck D, Neff C, Dufford M, Lanchbury JS, Labaer J, McFadden G. Analysis of vaccinia virus-host protein-protein interactions: validations of yeast two-hybrid screenings. Journal of Proteome Research. 8: 4311-8. PMID 19637933 DOI: 10.1021/Pr900491N  0.389
2009 Zhu C, Byers KJ, McCord RP, Shi Z, Berger MF, Newburger DE, Saulrieta K, Smith Z, Shah MV, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A, ... ... Labaer J, et al. High-resolution DNA-binding specificity analysis of yeast transcription factors. Genome Research. 19: 556-66. PMID 19158363 DOI: 10.1101/Gr.090233.108  0.308
2009 Hughes SR, Sterner DE, Bischoff KM, Hector RE, Dowd PF, Qureshi N, Bang SS, Grynaviski N, Chakrabarty T, Johnson ET, Dien BS, Mertens JA, Caughey RJ, Liu S, Butt TR, ... LaBaer J, et al. Engineered Saccharomyces cerevisiae strain for improved xylose utilization with a three-plasmid SUMO yeast expression system. Plasmid. 61: 22-38. PMID 18831987 DOI: 10.1016/J.Plasmid.2008.09.001  0.32
2009 Anderson K, Sibani S, Wong J, Hainsworth E, Mendoza E, Eugene R, Raphael J, Logvinenko T, Ramachandran N, Godwin A, Marks J, Engstrom P, LaBaer J. Using custom protein microarrays to identify autoantibody biomarkers for the early detection of breast cancer. Cancer Research. 69: 2003. DOI: 10.1158/0008-5472.Sabcs-2003  0.397
2009 Gonzalez-Malerva L, Park J, Zou L, Hu Y, Moradpour Z, Pearlberg J, Harlow E, LaBaer J. Autophagy and Tamoxifen Resistance in Breast Cancer. Cancer Research. 69: 5135-5135. DOI: 10.1158/0008-5472.Sabcs-09-5135  0.313
2009 Hughes SR, Rich JO, Bischoff KM, Hector RE, Qureshi N, Saha BC, Dien BS, Liu S, Jackson JS, Sterner DE, Butt TR, LaBaer J, Cotta MA. Automated Yeast Transformation Protocol to Engineer Saccharomyces cerevisiae Strains for Cellulosic Ethanol Production with Open Reading Frames That Express Proteins Binding to Xylose Isomerase Identified Using a Robotic Two-Hybrid Screen Jala - Journal of the Association For Laboratory Automation. 14: 200-212. DOI: 10.1016/J.Jala.2009.02.006  0.328
2009 Cormier C, LaBaer J, Chin J. Protein Structure Initiative-Materials Repository (PSI-MR): An Open Shared Public Resource for Structural Genomic Plasmids Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.233  0.366
2008 Anderson KS, Ramachandran N, Wong J, Hainsworth E, Dranoff G, LaBaer J. Immune monitoring of antibody responses to complex immunotherapies using custom protein microarrays. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 26: 3028. PMID 27947627 DOI: 10.1200/Jco.2008.26.15_Suppl.3028  0.316
2008 Link AJ, Labaer J. Using the Nucleic Acid Programmable Protein Array (NAPPA) for Identifying Protein-Protein Interactions. Protocol 2: Detection of Query Proteins on NAPPA Slides. Csh Protocols. 2008: pdb.prot5109. PMID 21356755 DOI: 10.1101/Pdb.Prot5109  0.446
2008 Link AJ, Labaer J. Using the Nucleic Acid Programmable Protein Array (NAPPA) for Identifying Protein-Protein Interactions. Protocol 1: Coexpression of Query Protein on NAPPA Slides. Csh Protocols. 2008: pdb.prot5108. PMID 21356754 DOI: 10.1101/pdb.prot5108  0.345
2008 Link AJ, Labaer J. Using the Nucleic Acid Programmable Protein Array (NAPPA) for Identifying Protein-Protein Interactions: General Guidelines. Csh Protocols. 2008: pdb.ip62. PMID 21356738 DOI: 10.1101/Pdb.Ip62  0.345
2008 Link AJ, Labaer J. Construction of Nucleic Acid Programmable Protein Arrays (NAPPA) 7: Detecting DNA on NAPPA Slides. Csh Protocols. 2008: pdb.prot5062. PMID 21356717 DOI: 10.1101/pdb.prot5062  0.332
2008 Link AJ, Labaer J. Construction of Nucleic Acid Programmable Protein Arrays (NAPPA) 6: Detecting Proteins on NAPPA Slides. Csh Protocols. 2008: pdb.prot5061. PMID 21356716 DOI: 10.1101/pdb.prot5061  0.36
2008 Link AJ, Labaer J. Construction of Nucleic Acid Programmable Protein Arrays (NAPPA) 5: Expressing Proteins on NAPPA Slides. Csh Protocols. 2008: pdb.prot5060. PMID 21356715 DOI: 10.1101/Pdb.Prot5060  0.462
2008 Link AJ, Labaer J. Construction of Nucleic Acid Programmable Protein Arrays (NAPPA) 4: DNA Biotinylation, Precipitation, and Arraying of Samples. Csh Protocols. 2008: pdb.prot5059. PMID 21356714 DOI: 10.1101/Pdb.Prot5059  0.448
2008 Link AJ, Labaer J. Construction of Nucleic Acid Programmable Protein Arrays (NAPPA) 3: Isolating DNA Plasmids in a 96-Well Plate Format. Csh Protocols. 2008: pdb.prot5058. PMID 21356713 DOI: 10.1101/Pdb.Prot5058  0.451
2008 Link AJ, Labaer J. Construction of Nucleic Acid Programmable Protein Arrays (NAPPA) 2: Preparing Bacterial Cultures in a 96-Well Format. Csh Protocols. 2008: pdb.prot5057. PMID 21356712 DOI: 10.1101/Pdb.Prot5057  0.461
2008 Link AJ, Labaer J. Construction of Nucleic Acid Programmable Protein Arrays (NAPPA) 1: Coating Glass Slides with Amino Silane. Csh Protocols. 2008: pdb.prot5056. PMID 21356711 DOI: 10.1101/Pdb.Prot5056  0.46
2008 Link AJ, Labaer J. High-Throughput Cloning of Open Reading Frames (ORFs): Assembling Large Sets of Expression Constructs. Csh Protocols. 2008: pdb.prot5050. PMID 21356688 DOI: 10.1101/Pdb.Prot5050  0.415
2008 Ramachandran N, Anderson KS, Raphael JV, Hainsworth E, Sibani S, Montor WR, Pacek M, Wong J, Eljanne M, Sanda MG, Hu Y, Logvinenko T, Labaer J. Tracking humoral responses using self assembling protein microarrays. Proteomics. Clinical Applications. 2: 1518-27. PMID 21136799 DOI: 10.1002/Prca.200800034  0.409
2008 Ramachandran N, Srivastava S, Labaer J. Applications of protein microarrays for biomarker discovery. Proteomics. Clinical Applications. 2: 1444-59. PMID 21136793 DOI: 10.1002/Prca.200800032  0.403
2008 Srivastava S, LaBaer J. Nanotubes light up protein arrays. Nature Biotechnology. 26: 1244-6. PMID 18997763 DOI: 10.1038/Nbt1108-1244  0.325
2008 Ramachandran N, Raphael JV, Hainsworth E, Demirkan G, Fuentes MG, Rolfs A, Hu Y, LaBaer J. Next-generation high-density self-assembling functional protein arrays. Nature Methods. 5: 535-8. PMID 18469824 DOI: 10.1038/Nmeth.1210  0.432
2008 Rolfs A, Montor WR, Yoon SS, Hu Y, Bhullar B, Kelley F, McCarron S, Jepson DA, Shen B, Taycher E, Mohr SE, Zuo D, Williamson J, Mekalanos J, Labaer J. Production and sequence validation of a complete full length ORF collection for the pathogenic bacterium Vibrio cholerae. Proceedings of the National Academy of Sciences of the United States of America. 105: 4364-9. PMID 18337508 DOI: 10.1073/Pnas.0712049105  0.428
2008 Anderson KS, Ramachandran N, Wong J, Raphael JV, Hainsworth E, Demirkan G, Cramer D, Aronzon D, Hodi FS, Harris L, Logvinenko T, LaBaer J. Application of protein microarrays for multiplexed detection of antibodies to tumor antigens in breast cancer. Journal of Proteome Research. 7: 1490-9. PMID 18311903 DOI: 10.1021/Pr700804C  0.364
2008 Rolfs A, Hu Y, Ebert L, Hoffmann D, Zuo D, Ramachandran N, Raphael J, Kelley F, McCarron S, Jepson DA, Shen B, Baqui MM, Pearlberg J, Taycher E, DeLoughery C, ... ... LaBaer J, et al. A biomedically enriched collection of 7000 human ORF clones. Plos One. 3: e1528. PMID 18231609 DOI: 10.1371/Journal.Pone.0001528  0.382
2008 Slagowski NL, Kramer RW, Morrison MF, LaBaer J, Lesser CF. A functional genomic yeast screen to identify pathogenic bacterial proteins Plos Pathogens. 4: e9. PMID 18208325 DOI: 10.1371/Journal.Ppat.0040009  0.439
2007 Langlais C, Guilleaume B, Wermke N, Scheuermann T, Ebert L, LaBaer J, Korn B. A systematic approach for testing expression of human full-length proteins in cell-free expression systems. Bmc Biotechnology. 7: 64. PMID 17915018 DOI: 10.1186/1472-6750-7-64  0.385
2007 Murthy T, Rolfs A, Hu Y, Shi Z, Raphael J, Moreira D, Kelley F, McCarron S, Jepson D, Taycher E, Zuo D, Mohr SE, Fernandez M, Brizuela L, LaBaer J. A full-genomic sequence-verified protein-coding gene collection for Francisella tularensis. Plos One. 2: e577. PMID 17593976 DOI: 10.1371/Journal.Pone.0000577  0.375
2007 Taycher E, Rolfs A, Hu Y, Zuo D, Mohr SE, Williamson J, Labaer J. A novel approach to sequence validating protein expression clones with automated decision making. Bmc Bioinformatics. 8: 198. PMID 17567908 DOI: 10.1186/1471-2105-8-198  0.316
2007 Hu Y, Rolfs A, Bhullar B, Murthy TV, Zhu C, Berger MF, Camargo AA, Kelley F, McCarron S, Jepson D, Richardson A, Raphael J, Moreira D, Taycher E, Zuo D, ... ... LaBaer J, et al. Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae. Genome Research. 17: 536-43. PMID 17322287 DOI: 10.1101/Gr.6037607  0.428
2007 Zuo D, Mohr SE, Hu Y, Taycher E, Rolfs A, Kramer J, Williamson J, LaBaer J. PlasmID: a centralized repository for plasmid clone information and distribution. Nucleic Acids Research. 35: D680-4. PMID 17132831 DOI: 10.1093/Nar/Gkl898  0.325
2006 Haab BB, Paulovich AG, Anderson NL, Clark AM, Downing GJ, Hermjakob H, Labaer J, Uhlen M. A reagent resource to identify proteins and peptides of interest for the cancer community: a workshop report. Molecular & Cellular Proteomics : McP. 5: 1996-2007. PMID 16867976 DOI: 10.1074/Mcp.T600020-Mcp200  0.334
2006 Ramachandran N, Hainsworth E, Demirkan G, LaBaer J. On-chip protein synthesis for making microarrays. Methods in Molecular Biology (Clifton, N.J.). 328: 1-14. PMID 16785638 DOI: 10.1385/1-59745-026-X:1  0.46
2006 Witt AE, Hines LM, Collins NL, Hu Y, Gunawardane RN, Moreira D, Raphael J, Jepson D, Koundinya M, Rolfs A, Taron B, Isakoff SJ, Brugge JS, LaBaer J. Functional proteomics approach to investigate the biological activities of cDNAs implicated in breast cancer. Journal of Proteome Research. 5: 599-610. PMID 16512675 DOI: 10.1021/Pr050395R  0.383
2006 Butcher RA, Bhullar BS, Perlstein EO, Marsischky G, LaBaer J, Schreiber SL. Microarray-based method for monitoring yeast overexpression strains reveals small-molecule targets in TOR pathway Nature Chemical Biology. 2: 103-109. PMID 16415861 DOI: 10.1038/Nchembio762  0.319
2005 Pearlberg J, Degot S, Endege W, Park J, Davies J, Gelfand E, Sawyer J, Conery A, Doench J, Li W, Gonzalez L, Boyce FM, Brizuela L, Labaer J, Grueneberg D, et al. Screens using RNAi and cDNA expression as surrogates for genetics in mammalian tissue culture cells. Cold Spring Harbor Symposia On Quantitative Biology. 70: 449-59. PMID 16869783 DOI: 10.1101/Sqb.2005.70.047  0.387
2005 Ramachandran N, Larson DN, Stark PR, Hainsworth E, LaBaer J. Emerging tools for real-time label-free detection of interactions on functional protein microarrays. The Febs Journal. 272: 5412-25. PMID 16262683 DOI: 10.1111/J.1742-4658.2005.04971.X  0.419
2005 Anderson KS, LaBaer J. The sentinel within: exploiting the immune system for cancer biomarkers. Journal of Proteome Research. 4: 1123-33. PMID 16083262 DOI: 10.1021/Pr0500814  0.356
2005 LaBaer J. So, you want to look for biomarkers (introduction to the special biomarkers issue). Journal of Proteome Research. 4: 1053-1059. PMID 16083254 DOI: 10.1021/Pr0501259  0.345
2005 Park J, Hu Y, Murthy TV, Vannberg F, Shen B, Rolfs A, Hutti JE, Cantley LC, Labaer J, Harlow E, Brizuela L. Building a human kinase gene repository: bioinformatics, molecular cloning, and functional validation. Proceedings of the National Academy of Sciences of the United States of America. 102: 8114-9. PMID 15928075 DOI: 10.1073/Pnas.0503141102  0.362
2005 LaBaer J, Ramachandran N. Protein microarrays as tools for functional proteomics. Current Opinion in Chemical Biology. 9: 14-9. PMID 15701447 DOI: 10.1016/J.Cbpa.2004.12.006  0.456
2004 LaBaer J, Qiu QQ, Anumanthan A, Mar W, Zuo D, Murthy TVS, Taycher H, Halleck A, Hainsworth E, Lory S, Brizuela L. The Pseudomonas aeruginosa PAO1 gene collection Genome Research. 14: 2190-2200. PMID 15489342 DOI: 10.1101/Gr.2482804  0.387
2004 Aguiar JC, LaBaer J, Blair PL, Shamailova VY, Koundinya M, Russell JA, Huang F, Mar W, Anthony RM, Witney A, Caruana SR, Brizuela L, Sacci JB, Hoffman SL, Carucci DJ. High-throughput generation of P. falciparum functional molecules by recombinational cloning. Genome Research. 14: 2076-82. PMID 15489329 DOI: 10.1101/Gr.2416604  0.367
2004 Marsischky G, LaBaer J. Many paths to many clones: a comparative look at high-throughput cloning methods. Genome Research. 14: 2020-2028. PMID 15489321 DOI: 10.1101/Gr.2528804  0.313
2004 Murthy TVS, Wu W, Qiu QQ, Shi Z, LaBaer J, Brizuela L. Bacterial cell-free system for high-throughput protein expression and a comparative analysis of Escherichia coli cell-free and whole cell expression systems. Protein Expression and Purification. 36: 217-225. PMID 15249043 DOI: 10.1016/J.Pep.2004.04.002  0.435
2004 Ramachandran N, Hainsworth E, Bhullar B, Eisenstein S, Rosen B, Lau AY, Walter JC, LaBaer J. Self-assembling protein microarrays. Science (New York, N.Y.). 305: 86-90. PMID 15232106 DOI: 10.1126/Science.1097639  0.442
2004 Pearlberg J, LaBaer J. Protein expression clone repositories for functional proteomics. Current Opinion in Chemical Biology. 8: 98-102. PMID 15036163 DOI: 10.1016/J.Cbpa.2003.12.010  0.391
2003 Braun P, LaBaer J. High throughput protein production for functional proteomics Trends in Biotechnology. 21: 383-388. PMID 12948670 DOI: 10.1016/S0167-7799(03)00189-6  0.448
2003 Hu Y, Hines LM, Weng H, Zuo D, Rivera M, Richardson A, LaBaer J. Analysis of genomic and proteomic data using advanced literature mining. Journal of Proteome Research. 2: 405-12. PMID 12938930 DOI: 10.1021/Pr0340227  0.349
2002 Brizuela L, Richardson A, Marsischky G, Labaer J. The FLEXGene repository: Exploiting the fruits of the genome projects by creating a needed resource to face the challenges of the post-genomic era Archives of Medical Research. 33: 318-324. PMID 12234520 DOI: 10.1016/S0188-4409(02)00372-7  0.313
2002 Braun P, Hu Y, Shen B, Halleck A, Koundinya M, Harlow E, LaBaer J. Proteome-scale purification of human proteins from bacteria. Proceedings of the National Academy of Sciences of the United States of America. 99: 2654-9. PMID 11880620 DOI: 10.1073/Pnas.042684199  0.457
2001 Brizuela L, Braun P, LaBaer J. FLEXGene repository: from sequenced genomes to gene repositories for high-throughput functional biology and proteomics Molecular and Biochemical Parasitology. 118: 155-165. PMID 11738706 DOI: 10.1016/S0166-6851(01)00366-8  0.326
1997 Hiyama H, Iavarone A, LaBaer J, Reeves SA. Regulated ectopic expression of cyclin D1 induces transcriptional activation of the cdk inhibitor p21 gene without altering cell cycle progression Oncogene. 14: 2533-2542. PMID 9191053 DOI: 10.1038/Sj.Onc.1201080  0.306
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