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Jeffery G. Saven - Publications

Affiliations: 
Chemistry University of Pennsylvania, Philadelphia, PA, United States 
Area:
theoretical chemistry
Website:
http://webdev.chem.upenn.edu/chem/research/faculty.php?id=2
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Year Citation  Score
2022 Villegas JA, Sinha NJ, Teramoto N, Von Bargen CD, Pochan DJ, Saven JG. Computational Design of Single-Peptide Nanocages with Nanoparticle Templating. Molecules (Basel, Switzerland). 27. PMID 35209027 DOI: 10.3390/molecules27041237  0.32
2019 Sinha NJ, Wu D, Kloxin CJ, Saven JG, Jensen GV, Pochan DJ. Polyelectrolyte character of rigid rod peptide bundlemer chains constructed via hierarchical self-assembly. Soft Matter. PMID 31738361 DOI: 10.1039/C9Sm01894H  0.371
2019 Wu D, Sinha N, Lee J, Sutherland BP, Halaszynski NI, Tian Y, Caplan J, Zhang HV, Saven JG, Kloxin CJ, Pochan DJ. Polymers with controlled assembly and rigidity made with click-functional peptide bundles. Nature. 574: 658-662. PMID 31666724 DOI: 10.1038/S41586-019-1683-4  0.502
2019 Xi J, Xiao J, Perez-Aguilar JM, Ping J, Johnson ATC, Saven JG, Liu R. Characterization of an engineered water-soluble variant of the full-length human mu opioid receptor. Journal of Biomolecular Structure & Dynamics. 1-9. PMID 31588852 DOI: 10.1080/07391102.2019.1677502  0.305
2018 Tian Y, Polzer FB, Zhang HV, Kiick KL, Saven JG, Pochan DJ. Nanotubes, Plates, and Needles: Pathway-Dependent Self-Assembly of Computationally Designed Peptides. Biomacromolecules. PMID 30299090 DOI: 10.1021/Acs.Biomac.8B01163  0.465
2018 Pulsipher KW, Bulos JA, Villegas JA, Saven JG, Dmochowski IJ. A Protein-Protein Host-Guest Complex: Thermostable Ferritin Encapsulating Positively Supercharged Green Fluorescent Protein. Protein Science : a Publication of the Protein Society. PMID 30051936 DOI: 10.1002/Pro.3483  0.394
2018 Haider MJ, Zhang HV, Sinha N, Fagan JA, Kiick KL, Saven JG, Pochan DJ. Self-assembly and soluble aggregate behavior of computationally designed coiled-coil peptide bundles. Soft Matter. PMID 29923575 DOI: 10.1039/C8Sm00435H  0.399
2018 Tian Y, Zhang HV, Kiick KL, Saven JG, Pochan DJ. Fabrication of One- and Two-Dimensional Gold Nanoparticle Arrays on Computationally Designed Self-Assembled Peptide Templates Chemistry of Materials. 30: 8510-8520. DOI: 10.1021/Acs.Chemmater.8B03206  0.447
2017 Eibling MJ, MacDermaid CM, Qian Z, Lanci CJ, Park SJ, Saven JG. Controlling association and separation of gold nanoparticles with computationally designed zinc-coordinating proteins. Journal of the American Chemical Society. PMID 29148741 DOI: 10.1021/Jacs.7B04786  0.756
2017 Ping J, Pulsipher KW, Vishnubhotla R, Villegas JA, Hicks TL, Honig S, Saven JG, Dmochowski IJ, Johnson ATC. Structural-functional analysis of engineered protein-nanoparticle assemblies using graphene microelectrodes. Chemical Science. 8: 5329-5334. PMID 28970912 DOI: 10.1039/C7Sc01565H  0.333
2017 Pulsipher KW, Villegas JA, Roose BW, Hicks TL, Yoon J, Saven JG, Dmochowski IJ. Thermophilic Ferritin 24mer Assembly and Nanoparticle Encapsulation Modulated by Interdimer Electrostatic Repulsion. Biochemistry. PMID 28682599 DOI: 10.1021/Acs.Biochem.7B00296  0.402
2017 Tian Y, Zhang HV, Kiick KL, Saven JG, Pochan DJ. Transition from disordered aggregates to ordered lattices: kinetic control of the assembly of a computationally designed peptide. Organic & Biomolecular Chemistry. PMID 28639674 DOI: 10.1039/C7Ob01197K  0.47
2017 Sungwienwong I, Hostetler ZM, Blizzard RJ, Porter JJ, Driggers CM, Mbengi LZ, Villegas JA, Speight LC, Saven JG, Perona JJ, Kohli RM, Mehl RA, Petersson EJ. Improving target amino acid selectivity in a permissive aminoacyl tRNA synthetase through counter-selection. Organic & Biomolecular Chemistry. PMID 28397914 DOI: 10.1039/C7Ob00582B  0.317
2016 Zhang HV, Polzer F, Haider MJ, Tian Y, Villegas JA, Kiick KL, Pochan DJ, Saven JG. Computationally designed peptides for self-assembly of nanostructured lattices. Science Advances. 2: e1600307. PMID 27626071 DOI: 10.1126/Sciadv.1600307  0.498
2016 Naylor CH, Kybert NJ, Schneier C, Xi J, Romero G, Saven JG, Liu R, Johnson AT. Scalable Production of Molybdenum Disulfide-Based Biosensors. Acs Nano. PMID 27227361 DOI: 10.1021/Acsnano.6B02137  0.31
2016 Polizzi NF, Eibling MJ, Perez-Aguilar JM, Rawson J, Lanci CJ, Fry HC, Beratan DN, Saven JG, Therien MJ. Photoinduced Electron Transfer Elicits a Change in the Static Dielectric Constant of a de Novo Designed Protein. Journal of the American Chemical Society. PMID 26840013 DOI: 10.1021/Jacs.5B13180  0.762
2015 Gao L, Liu W, Lee OS, Dmochowski IJ, Saven JG. Xe affinities of water-soluble cryptophanes and the role of confined water. Chemical Science. 6: 7238-7248. PMID 29861959 DOI: 10.1039/C5Sc02401C  0.308
2015 Niedzwiecki DJ, Lanci CJ, Shemer G, Cheng PS, Saven JG, Drndić M. Observing Changes in the Structure and Oligomerization State of a Helical Protein Dimer Using Solid-State Nanopores. Acs Nano. 9: 8907-15. PMID 26262433 DOI: 10.1021/Acsnano.5B02714  0.772
2014 Sathaye S, Zhang H, Sonmez C, Schneider JP, MacDermaid CM, Von Bargen CD, Saven JG, Pochan DJ. Engineering complementary hydrophobic interactions to control β-hairpin peptide self-assembly, network branching, and hydrogel properties. Biomacromolecules. 15: 3891-900. PMID 25251904 DOI: 10.1021/Bm500874T  0.738
2014 Sathaye S, Zhang H, Sonmez C, Schneider JP, MacDermaid CM, Von Bargen CD, Saven JG, Pochan DJ. Engineering complementary hydrophobic interactions to control β-hairpin peptide self-assembly, network branching, and hydrogel properties. Biomacromolecules. 15: 3891-900. PMID 25251904 DOI: 10.1021/Bm500874T  0.738
2014 Corcelli SA, Laird BB, Saven JG, Schmidt JR. Tribute to James L. Skinner. The Journal of Physical Chemistry. B. 118: 7669-70. PMID 25031097 DOI: 10.1021/Jp5035486  0.597
2014 Corcelli SA, Laird BB, Saven JG, Schmidt JR. Tribute to James L. Skinner. The Journal of Physical Chemistry. B. 118: 7669-70. PMID 25031097 DOI: 10.1021/Jp5035486  0.597
2013 Von Bargen CD, MacDermaid CM, Lee OS, Deria P, Therien MJ, Saven JG. Origins of the helical wrapping of phenyleneethynylene polymers about single-walled carbon nanotubes. The Journal of Physical Chemistry. B. 117: 12953-65. PMID 23941695 DOI: 10.1021/Jp402140T  0.739
2013 Fry HC, Lehmann A, Sinks LE, Asselberghs I, Tronin A, Krishnan V, Blasie JK, Clays K, DeGrado WF, Saven JG, Therien MJ. Computational de novo design and characterization of a protein that selectively binds a highly hyperpolarizable abiological chromophore. Journal of the American Chemical Society. 135: 13914-26. PMID 23931685 DOI: 10.1021/Ja4067404  0.434
2013 Perez-Aguilar JM, Xi J, Matsunaga F, Cui X, Selling B, Saven JG, Liu R. A computationally designed water-soluble variant of a G-protein-coupled receptor: the human mu opioid receptor. Plos One. 8: e66009. PMID 23799068 DOI: 10.1371/Journal.Pone.0066009  0.372
2012 Lanci CJ, MacDermaid CM, Kang SG, Acharya R, North B, Yang X, Qiu XJ, DeGrado WF, Saven JG. Computational design of a protein crystal. Proceedings of the National Academy of Sciences of the United States of America. 109: 7304-9. PMID 22538812 DOI: 10.1073/Pnas.1112595109  0.772
2012 Lanci CJ, MacDermaid CM, Kang SG, Acharya R, North B, Yang X, Qiu XJ, DeGrado WF, Saven JG. Computational design of a protein crystal. Proceedings of the National Academy of Sciences of the United States of America. 109: 7304-9. PMID 22538812 DOI: 10.1073/Pnas.1112595109  0.772
2012 Liu R, Perez-Aguilar JM, Liang D, Saven JG. Binding site and affinity prediction of general anesthetics to protein targets using docking. Anesthesia and Analgesia. 114: 947-55. PMID 22392968 DOI: 10.1213/Ane.0B013E31824C4Def  0.319
2012 Cui T, Mowrey D, Bondarenko V, Tillman T, Ma D, Landrum E, Perez-Aguilar JM, He J, Wang W, Saven JG, Eckenhoff RG, Tang P, Xu Y. NMR structure and dynamics of a designed water-soluble transmembrane domain of nicotinic acetylcholine receptor. Biochimica Et Biophysica Acta. 1818: 617-26. PMID 22155685 DOI: 10.1016/J.Bbamem.2011.11.021  0.445
2011 Hiesinger W, Perez-Aguilar JM, Atluri P, Marotta NA, Frederick JR, Fitzpatrick JR, McCormick RC, Muenzer JR, Yang EC, Levit RD, Yuan LJ, Macarthur JW, Saven JG, Woo YJ. Computational protein design to reengineer stromal cell-derived factor-1α generates an effective and translatable angiogenic polypeptide analog. Circulation. 124: S18-26. PMID 21911811 DOI: 10.1161/Circulationaha.110.009431  0.356
2011 Diaz JE, Lin CS, Kunishiro K, Feld BK, Avrantinis SK, Bronson J, Greaves J, Saven JG, Weiss GA. Computational design and selections for an engineered, thermostable terpene synthase. Protein Science : a Publication of the Protein Society. 20: 1597-606. PMID 21739507 DOI: 10.1002/Pro.691  0.313
2011 Petty TJ, Emamzadah S, Costantino L, Petkova I, Stavridi ES, Saven JG, Vauthey E, Halazonetis TD. An induced fit mechanism regulates p53 DNA binding kinetics to confer sequence specificity. The Embo Journal. 30: 2167-76. PMID 21522129 DOI: 10.1038/Emboj.2011.127  0.702
2011 Saven JG. Computational protein design: engineering molecular diversity, nonnatural enzymes, nonbiological cofactor complexes, and membrane proteins. Current Opinion in Chemical Biology. 15: 452-7. PMID 21493122 DOI: 10.1016/J.Cbpa.2011.03.014  0.446
2011 Samish I, MacDermaid CM, Perez-Aguilar JM, Saven JG. Theoretical and computational protein design. Annual Review of Physical Chemistry. 62: 129-49. PMID 21128762 DOI: 10.1146/Annurev-Physchem-032210-103509  0.788
2011 Samish I, MacDermaid CM, Perez-Aguilar JM, Saven JG. Theoretical and computational protein design. Annual Review of Physical Chemistry. 62: 129-49. PMID 21128762 DOI: 10.1146/Annurev-Physchem-032210-103509  0.788
2010 Saven JG. Computational protein design: Advances in the design and redesign of biomolecular nanostructures. Current Opinion in Colloid & Interface Science. 15: 13-17. PMID 21544231 DOI: 10.1016/J.Cocis.2009.06.002  0.465
2010 Fry HC, Lehmann A, Saven JG, DeGrado WF, Therien MJ. Computational design and elaboration of a de novo heterotetrameric alpha-helical protein that selectively binds an emissive abiological (porphinato)zinc chromophore. Journal of the American Chemical Society. 132: 3997-4005. PMID 20192195 DOI: 10.1021/Ja907407M  0.377
2009 Griffon N, Jin W, Petty TJ, Millar J, Badellino KO, Saven JG, Marchadier DH, Kempner ES, Billheimer J, Glick JM, Rader DJ. Identification of the active form of endothelial lipase, a homodimer in a head-to-tail conformation. The Journal of Biological Chemistry. 284: 23322-30. PMID 19567873 DOI: 10.1074/Jbc.M109.037002  0.695
2009 Peterson ME, Chen F, Saven JG, Roos DS, Babbitt PC, Sali A. Evolutionary constraints on structural similarity in orthologs and paralogs. Protein Science : a Publication of the Protein Society. 18: 1306-15. PMID 19472362 DOI: 10.1002/Pro.143  0.437
2009 Tang J, Kang SG, Saven JG, Gai F. Characterization of the cofactor-induced folding mechanism of a zinc-binding peptide using computationally designed mutants. Journal of Molecular Biology. 389: 90-102. PMID 19361525 DOI: 10.1016/J.Jmb.2009.03.074  0.366
2009 Szep S, Park S, Boder ET, Van Duyne GD, Saven JG. Structural coupling between FKBP12 and buried water. Proteins. 74: 603-11. PMID 18704951 DOI: 10.1002/Prot.22176  0.396
2009 Cui T, Tang P, Saven JG, Eckenhoff RG, Xu Y. NMR Structure of Water-Solubilized Transmembrane Domain of Nicotinic Acetylcholine Receptor Biophysical Journal. 96: 429a. DOI: 10.1016/J.Bpj.2008.12.2197  0.324
2008 Butts CA, Swift J, Kang SG, Di Costanzo L, Christianson DW, Saven JG, Dmochowski IJ. Directing noble metal ion chemistry within a designed ferritin protein. Biochemistry. 47: 12729-39. PMID 18991401 DOI: 10.1021/Bi8016735  0.351
2008 McAllister KA, Zou H, Cochran FV, Bender GM, Senes A, Fry HC, Nanda V, Keenan PA, Lear JD, Saven JG, Therien MJ, Blasie JK, DeGrado WF. Using alpha-helical coiled-coils to design nanostructured metalloporphyrin arrays. Journal of the American Chemical Society. 130: 11921-7. PMID 18710226 DOI: 10.1021/Ja800697G  0.389
2008 Lehmann A, Saven JG. Computational design of four-helix bundle proteins that bind nonbiological cofactors. Biotechnology Progress. 24: 74-9. PMID 18197672 DOI: 10.1021/Bp070178Q  0.321
2008 Lehmann A, Saven JG. Computational design of four-helix bundle proteins that bind nonbiological cofactors. Biotechnology Progress. 24: 74-9. PMID 18197672 DOI: 10.1021/Bp070178Q  0.321
2007 Philibert P, Stoessel A, Wang W, Sibler AP, Bec N, Larroque C, Saven JG, Courtête J, Weiss E, Martineau P. A focused antibody library for selecting scFvs expressed at high levels in the cytoplasm. Bmc Biotechnology. 7: 81. PMID 18034894 DOI: 10.1186/1472-6750-7-81  0.332
2007 Bender GM, Lehmann A, Zou H, Cheng H, Fry HC, Engel D, Therien MJ, Blasie JK, Roder H, Saven JG, DeGrado WF. De novo design of a single-chain diphenylporphyrin metalloprotein. Journal of the American Chemical Society. 129: 10732-40. PMID 17691729 DOI: 10.1021/Ja071199J  0.367
2007 Kang SG, Saven JG. Computational protein design: structure, function and combinatorial diversity. Current Opinion in Chemical Biology. 11: 329-34. PMID 17524729 DOI: 10.1016/J.Cbpa.2007.05.006  0.46
2007 Kono H, Wang W, Saven JG. Combinatorial protein design strategies using computational methods. Methods in Molecular Biology (Clifton, N.J.). 352: 3-22. PMID 17041256 DOI: 10.1385/1-59745-187-8:3  0.455
2006 Swift J, Wehbi WA, Kelly BD, Stowell XF, Saven JG, Dmochowski IJ. Design of functional ferritin-like proteins with hydrophobic cavities. Journal of the American Chemical Society. 128: 6611-9. PMID 16704261 DOI: 10.1021/Ja057069X  0.404
2006 Park S, Xu Y, Stowell XF, Gai F, Saven JG, Boder ET. Limitations of yeast surface display in engineering proteins of high thermostability. Protein Engineering, Design & Selection : Peds. 19: 211-7. PMID 16537642 DOI: 10.1093/Protein/Gzl003  0.382
2006 Bunagan MR, Yang X, Saven JG, Gai F. Ultrafast folding of a computationally designed Trp-cage mutant: Trp2-cage. The Journal of Physical Chemistry. B. 110: 3759-63. PMID 16494434 DOI: 10.1021/Jp055288Z  0.496
2006 Park S, Saven JG. Simulation of pH-dependent edge strand rearrangement in human beta-2 microglobulin. Protein Science : a Publication of the Protein Society. 15: 200-7. PMID 16322574 DOI: 10.1110/Ps.051814306  0.322
2006 Cochran FV, Wu SP, Wang W, Nanda V, Saven JG, Therien aMJ, DeGrado WF. Computational De Novo Design and Characterization of a Four-Helix Bundle Protein that Selectively Binds a Nonbiological Cofactor [J. Am. Chem. Soc. 2005, 127, 1346−1347]. Journal of the American Chemical Society. 128: 663-663. DOI: 10.1021/Ja059923Q  0.41
2005 Biswas P, Zou J, Saven JG. Statistical theory for protein ensembles with designed energy landscapes. The Journal of Chemical Physics. 123: 154908. PMID 16252973 DOI: 10.1063/1.2062047  0.414
2005 Nanda V, Rosenblatt MM, Osyczka A, Kono H, Getahun Z, Dutton PL, Saven JG, Degrado WF. De novo design of a redox-active minimal rubredoxin mimic. Journal of the American Chemical Society. 127: 5804-5. PMID 15839675 DOI: 10.1021/Ja050553F  0.347
2005 Park S, Boder ET, Saven JG. Modulating the DNA affinity of Elk-1 with computationally selected mutations. Journal of Molecular Biology. 348: 75-83. PMID 15808854 DOI: 10.1016/J.Jmb.2004.12.062  0.347
2005 Cochran FV, Wu SP, Wang W, Nanda V, Saven JG, Therien MJ, DeGrado WF. Computational de novo design and characterization of a four-helix bundle protein that selectively binds a nonbiological cofactor. Journal of the American Chemical Society. 127: 1346-7. PMID 15686346 DOI: 10.1021/Ja044129A  0.449
2005 Park S, Saven JG. Chapter 18 Computationally Assisted Protein Design Annual Reports in Computational Chemistry. 1: 245-253. DOI: 10.1016/S1574-1400(05)01018-2  0.469
2005 Yang X, Saven JG. Computational methods for protein design and protein sequence variability: Biased Monte Carlo and replica exchange Chemical Physics Letters. 401: 205-210. DOI: 10.1016/J.Cplett.2004.10.153  0.49
2005 Park S, Kono H, Wang W, Boder ET, Saven JG. Progress in the development and application of computational methods for probabilistic protein design Computers and Chemical Engineering. 29: 407-421. DOI: 10.1016/J.Compchemeng.2004.07.037  0.482
2004 Park S, Yang X, Saven JG. Advances in computational protein design. Current Opinion in Structural Biology. 14: 487-94. PMID 15313244 DOI: 10.1016/J.Sbi.2004.06.002  0.478
2004 Park S, Yang X, Saven JG. Advances in computational protein design. Current Opinion in Structural Biology. 14: 487-94. PMID 15313244 DOI: 10.1016/J.Sbi.2004.06.002  0.478
2004 Slovic AM, Kono H, Lear JD, Saven JG, DeGrado WF. Computational design of water-soluble analogues of the potassium channel KcsA. Proceedings of the National Academy of Sciences of the United States of America. 101: 1828-33. PMID 14766985 DOI: 10.1073/Pnas.0306417101  0.374
2004 Park S, Stowell XF, Wang W, Yang X, Saven JG. Computational protein design and discovery Annual Reports On the Progress of Chemistry - Section C. 100: 195-236. DOI: 10.1039/B313669H  0.562
2004 Lee OS, Saven JG. Simulation studies of a helical m-phenylene ethynylene foldamer Journal of Physical Chemistry B. 108: 11988-11994. DOI: 10.1021/Jp048642M  0.336
2004 Zhu Y, Fu X, Wang T, Tamura A, Takada S, Saven JG, Gai F. Guiding the search for a protein's maximum rate of folding Chemical Physics. 307: 99-109. DOI: 10.1016/J.Chemphys.2004.05.008  0.592
2003 Fu X, Kono H, Saven JG. Probabilistic approach to the design of symmetric protein quaternary structures. Protein Engineering. 16: 971-7. PMID 14983077 DOI: 10.1093/Protein/Gzg132  0.571
2003 Fu X, Kono H, Saven JG. Probabilistic approach to the design of symmetric protein quaternary structures. Protein Engineering. 16: 971-7. PMID 14983077 DOI: 10.1093/Protein/Gzg132  0.571
2003 Calhoun JR, Kono H, Lahr S, Wang W, DeGrado WF, Saven JG. Computational design and characterization of a monomeric helical dinuclear metalloprotein. Journal of Molecular Biology. 334: 1101-15. PMID 14643669 DOI: 10.1016/J.Jmb.2003.10.004  0.489
2003 Saven JG. Connecting statistical and optimized potentials in protein folding via a generalized foldability criterion Journal of Chemical Physics. 118: 6133-6136. DOI: 10.1063/1.1565995  0.346
2003 Zou J, Saven JG. Using self-consistent fields to bias Monte Carlo methods with applications to designing and sampling protein sequences Journal of Chemical Physics. 118: 3843-3854. DOI: 10.1063/1.1539845  0.378
2002 Saven JG. Combinatorial protein design. Current Opinion in Structural Biology. 12: 453-8. PMID 12163067 DOI: 10.2142/Biophys.43.186  0.438
2001 Saven JG. Designing protein energy landscapes. Chemical Reviews. 101: 3113-30. PMID 11710064 DOI: 10.1021/Cr000058W  0.388
2001 Kono H, Saven JG. Statistical theory for protein combinatorial libraries. Packing interactions, backbone flexibility, and the sequence variability of a main-chain structure. Journal of Molecular Biology. 306: 607-28. PMID 11178917 DOI: 10.1006/Jmbi.2000.4422  0.44
2000 Zou J, Saven JG. Statistical theory of combinatorial libraries of folding proteins: energetic discrimination of a target structure. Journal of Molecular Biology. 296: 281-94. PMID 10656832 DOI: 10.1006/Jmbi.1999.3426  0.368
1999 Prince RB, Saven JG, Wolynes PG, Moore JS. Cooperative conformational transitions in phenylene ethynylene oligomers: Chain-length dependence Journal of the American Chemical Society. 121: 3114-3121. DOI: 10.1021/Ja983995I  0.596
1997 Nelson JC, Saven JG, Moore JS, Wolynes PG. Solvophobically driven folding of nonbiological oligomers. Science (New York, N.Y.). 277: 1793-6. PMID 9295264 DOI: 10.1126/Science.277.5333.1793  0.616
1997 Stephens MD, Saven JG, Skinner JL. Molecular theory of electronic spectroscopy in nonpolar fluids: Ultrafast solvation dynamics and absorption and emission line shapes Journal of Chemical Physics. 106: 2129-2144. DOI: 10.1063/1.473144  0.61
1997 Saven JG, Wolynes PG. Statistical mechanics of the combinatorial synthesis and analysis of folding macromolecules Journal of Physical Chemistry B. 101: 8375-8389. DOI: 10.1021/Jp971707J  0.646
1996 Saven JG, Wolynes PG. Local conformational signals and the statistical thermodynamics of collapsed helical proteins. Journal of Molecular Biology. 257: 199-216. PMID 8632455 DOI: 10.1006/Jmbi.1996.0156  0.606
1996 Wang J, Saven JG, Wolynes PG. Kinetics In A Globally Connected, Correlated Random Energy Model Journal of Chemical Physics. 105: 11276-11284. DOI: 10.1063/1.472869  0.589
1996 Wang J, Saven JG, Wolynes PG. Kinetics in a globally connected, correlated random energy model Journal of Chemical Physics. 105: 11276-11284.  0.518
1994 Saven JG, Wang J, Wolynes PG. Kinetics of protein folding: The dynamics of globally connected rough energy landscapes with biases Journal of Chemical Physics. 101: 11037-11043. DOI: 10.1063/1.467855  0.626
1994 Saven JG, Wang J, Wolynes PG. Kinetics of protein folding: The dynamics of globally connected rough energy landscapes with biases The Journal of Chemical Physics. 101: 11037-11043.  0.584
1993 Saven JG, Skinner JL. A molecular theory of the line shape: Inhomogeneous and homogeneous electronic spectra of dilute chromophores in nonpolar fluids The Journal of Chemical Physics. 99: 4391-4402. DOI: 10.1063/1.466092  0.605
1991 Saven JG, Skinner JL, Wright JR. Classical and quantum continuum percolation with hard core interactions Journal of Chemical Physics. 94: 6153-6159. DOI: 10.1063/1.460401  0.588
Low-probability matches (unlikely to be authored by this person)
2013 Deria P, Von Bargen CD, Olivier JH, Kumbhar AS, Saven JG, Therien MJ. Single-handed helical wrapping of single-walled carbon nanotubes by chiral, ionic, semiconducting polymers. Journal of the American Chemical Society. 135: 16220-34. PMID 24070370 DOI: 10.1021/Ja408430V  0.297
2009 Williams F, Chen GF, Mattar SM, Scudder PH, Trieber DA, Saven JG, Whritenour DC, Cimino P, Barone V. Magneto-structural relationships for radical cation and neutral pyridinophane structures with intrabridgehead nitrogen atoms. An integrated experimental and quantum mechanical study. The Journal of Physical Chemistry. B. 113: 9026-34. PMID 19507811 DOI: 10.1021/Jp902493E  0.297
2006 Bronson J, Lee OS, Saven JG. Molecular Dynamics Simulation of WSK-3, a Computationally Designed, Water-Soluble Variant of the Integral Membrane Protein KcsA. Biophysical Journal. 90: 1156-63. PMID 16299086 DOI: 10.1529/Biophysj.105.068965  0.296
2006 Bronson J, Lee OS, Saven JG. Molecular Dynamics Simulation of WSK-3, a Computationally Designed, Water-Soluble Variant of the Integral Membrane Protein KcsA. Biophysical Journal. 90: 1156-63. PMID 16299086 DOI: 10.1529/Biophysj.105.068965  0.296
2002 Wang W, Saven JG. Designing gene libraries from protein profiles for combinatorial protein experiments. Nucleic Acids Research. 30: e120. PMID 12409479 DOI: 10.1093/Nar/Gnf119  0.294
2002 Wang W, Saven JG. Designing gene libraries from protein profiles for combinatorial protein experiments. Nucleic Acids Research. 30: e120. PMID 12409479 DOI: 10.1093/Nar/Gnf119  0.294
2011 Khan NS, Perez-Aguilar JM, Kaufmann T, Hill PA, Taratula O, Lee OS, Carroll PJ, Saven JG, Dmochowski IJ. Multiple hindered rotators in a gyroscope-inspired tribenzylamine hemicryptophane. The Journal of Organic Chemistry. 76: 1418-24. PMID 21271707 DOI: 10.1021/Jo102480S  0.29
2022 Guo R, Sinha NJ, Misra R, Tang Y, Langenstein M, Kim K, Fagan JA, Kloxin CJ, Jensen G, Pochan DJ, Saven JG. Computational Design of Homotetrameric Peptide Bundle Variants Spanning a Wide Range of Charge States. Biomacromolecules. PMID 35312288 DOI: 10.1021/acs.biomac.1c01539  0.282
2012 Perez-Aguilar JM, Saven JG. Computational design of membrane proteins. Structure (London, England : 1993). 20: 5-14. PMID 22244752 DOI: 10.1016/J.Str.2011.12.003  0.28
2012 Perez-Aguilar JM, Saven JG. Computational design of membrane proteins. Structure (London, England : 1993). 20: 5-14. PMID 22244752 DOI: 10.1016/J.Str.2011.12.003  0.28
2012 Schramm CA, Hannigan BT, Donald JE, Keasar C, Saven JG, Degrado WF, Samish I. Knowledge-based potential for positioning membrane-associated structures and assessing residue-specific energetic contributions. Structure (London, England : 1993). 20: 924-35. PMID 22579257 DOI: 10.1016/J.Str.2012.03.016  0.279
2012 Schramm CA, Hannigan BT, Donald JE, Keasar C, Saven JG, Degrado WF, Samish I. Knowledge-based potential for positioning membrane-associated structures and assessing residue-specific energetic contributions. Structure (London, England : 1993). 20: 924-35. PMID 22579257 DOI: 10.1016/J.Str.2012.03.016  0.279
2006 North B, Cristian L, Fu Stowell X, Lear JD, Saven JG, Degrado WF. Characterization of a membrane protein folding motif, the Ser zipper, using designed peptides. Journal of Molecular Biology. 359: 930-9. PMID 16697010 DOI: 10.1016/J.Jmb.2006.04.001  0.277
2022 Sinha NJ, Guo R, Misra R, Fagan J, Faraone A, Kloxin CJ, Saven JG, Jensen GV, Pochan DJ. Colloid-like solution behavior of computationally designed coiled coil bundlemers. Journal of Colloid and Interface Science. 606: 1974-1982. PMID 34749446 DOI: 10.1016/j.jcis.2021.09.184  0.276
2004 Kono H, Solvic AM, Lear JD, Saven JG, DeGrado WF. 2SD06 Computational design of water-soluble analogues of the potassium channel KcsA Seibutsu Butsuri. 44. DOI: 10.2142/Biophys.44.S18_3  0.272
2007 Chowdhury P, Wang W, Lavender S, Bunagan MR, Klemke JW, Tang J, Saven JG, Cooperman BS, Gai F. Fluorescence correlation spectroscopic study of serpin depolymerization by computationally designed peptides. Journal of Molecular Biology. 369: 462-73. PMID 17442346 DOI: 10.1016/J.Jmb.2007.03.042  0.265
2015 Ping J, Xi J, Saven JG, Liu R, Johnson AT. Quantifying the effect of ionic screening with protein-decorated graphene transistors. Biosensors & Bioelectronics. PMID 26626969 DOI: 10.1016/J.Bios.2015.11.052  0.262
2024 Patkar SS, Tang Y, Zhang T, Bisram AM, Saven JG, Pochan DJ, Kiick KL. Genetically Fused Resilin-like Polypeptide-Coiled Coil Bundlemer Conjugates Exhibit Tunable Multistimuli-Responsiveness and Undergo Nanofibrillar Assembly. Biomacromolecules. 25: 2449-2461. PMID 38484154 DOI: 10.1021/acs.biomac.3c01402  0.26
2005 Koh SK, Ananthasuresh GK, Yang X, Saven J. Continuous optimization method for the sequence design of protein models consisting of multiple monomer types 2005 Nsti Nanotechnology Conference and Trade Show - Nsti Nanotech 2005 Technical Proceedings. 520-523.  0.256
2018 Ping J, Vishnubhotla R, Xi J, Ducos P, Saven JG, Liu R, Johnson ATC. All-Electronic Quantification of Neuropeptide-Receptor Interaction Using a Bias-Free Functionalized Graphene Microelectrode. Acs Nano. PMID 29634231 DOI: 10.1021/Acsnano.7B07474  0.245
2021 Sinha NJ, Langenstein MG, Pochan DJ, Kloxin CJ, Saven JG. Peptide Design and Self-assembly into Targeted Nanostructure and Functional Materials. Chemical Reviews. PMID 34709798 DOI: 10.1021/acs.chemrev.1c00712  0.235
2017 Ping J, Blum JE, Vishnubhotla R, Vrudhula A, Naylor CH, Gao Z, Saven JG, Johnson ATC. pH Sensing Properties of Flexible, Bias-Free Graphene Microelectrodes in Complex Fluids: From Phosphate Buffer Solution to Human Serum. Small (Weinheim An Der Bergstrasse, Germany). PMID 28612484 DOI: 10.1002/Smll.201700564  0.235
2012 Zhou R, Perez-Aguilar JM, Meng Q, Saven JG, Liu R. Opioid binding sites in human serum albumin. Anesthesia and Analgesia. 114: 122-8. PMID 22025496 DOI: 10.1213/Ane.0B013E318232E922  0.227
2021 Bulos JA, Guo R, Wang Z, DeLessio MA, Saven JG, Dmochowski IJ. Design of a Superpositively Charged Enzyme: Human Carbonic Anhydrase II Variant with Ferritin Encapsulation and Immobilization. Biochemistry. PMID 34757723 DOI: 10.1021/acs.biochem.1c00515  0.222
2021 Kim K, Kloxin CJ, Saven JG, Pochan DJ. Nanofibers Produced by Electrospinning of Ultrarigid Polymer Rods Made from Designed Peptide Bundlemers. Acs Applied Materials & Interfaces. PMID 34029045 DOI: 10.1021/acsami.1c04027  0.214
2023 Patkar SS, Tang Y, Bisram AM, Zhang T, Saven JG, Pochan DJ, Kiick KL. Genetic Fusion of Thermoresponsive Polypeptides with UCST-type Behavior Mediates 1D Assembly of Coiled-Coil Bundlemers. Angewandte Chemie (International Ed. in English). e202301331. PMID 36988077 DOI: 10.1002/anie.202301331  0.2
2021 Xi J, Yang N, Perez-Aguilar JM, Selling B, Grothusen JR, Lamichhane R, Saven JG, Liu R. Novel variants of engineered water soluble mu opioid receptors with extensive mutations and removal of cysteines. Proteins. PMID 34152652 DOI: 10.1002/prot.26160  0.199
2021 Sinha NJ, Kloxin CJ, Saven JG, Jensen GV, Kelman Z, Pochan DJ. Recombinant expression of computationally designed peptide-bundlemers in Escherichia coli. Journal of Biotechnology. PMID 33689866 DOI: 10.1016/j.jbiotec.2021.03.004  0.193
2001 Kono H, Zou J, Saven JG. Statistical theory of protein combinatorial libraries 2001 International Conference On Computational Nanoscience - Iccn 2001. 33-36.  0.191
1997 Saven JG, Wolynes PG. Local signals in the energy landscape of collapsed helical proteins Physica D: Nonlinear Phenomena. 107: 330-337.  0.19
2021 Wen C, Selling B, Yeliseev A, Xi J, Perez-Aguilar JM, Gao Z, Saven JG, Johnson ATC, Liu R. The C-terminus of the mu opioid receptor is critical in G-protein interaction as demonstrated by a novel graphene biosensor. Ieee Sensors Journal. 21: 5758-5762. PMID 33679256 DOI: 10.1109/jsen.2020.3043149  0.189
2024 Ning Y, Yang S, Yang DB, Cai YY, Xu J, Li R, Zhang Y, Kagan CR, Saven JG, Murray CB. Dynamic Nanocrystal Superlattices with Thermally Triggerable Lubricating Ligands. Journal of the American Chemical Society. PMID 38295018 DOI: 10.1021/jacs.3c10706  0.184
2009 Kang YK, Lee OS, Deria P, Kim SH, Park TH, Bonnell DA, Saven JG, Therien MJ. Helical wrapping of single-walled carbon nanotubes by water soluble poly(p-phenyleneethynylene). Nano Letters. 9: 1414-8. PMID 19281229 DOI: 10.1021/Nl8032334  0.18
2009 Kang YK, Lee OS, Deria P, Kim SH, Park TH, Bonnell DA, Saven JG, Therien MJ. Helical wrapping of single-walled carbon nanotubes by water soluble poly(p-phenyleneethynylene). Nano Letters. 9: 1414-8. PMID 19281229 DOI: 10.1021/Nl8032334  0.18
2014 Zhao X, Perez-Aguilar JM, Matsunaga F, Lerner M, Xi J, Selling B, Johnson AT, Saven JG, Liu R. Characterization of a computationally designed water-soluble human μ-opioid receptor variant using available structural information. Anesthesiology. 121: 866-75. PMID 24835677 DOI: 10.1097/Aln.0000000000000308  0.171
2014 Zhao X, Perez-Aguilar JM, Matsunaga F, Lerner M, Xi J, Selling B, Johnson AT, Saven JG, Liu R. Characterization of a computationally designed water-soluble human μ-opioid receptor variant using available structural information. Anesthesiology. 121: 866-75. PMID 24835677 DOI: 10.1097/Aln.0000000000000308  0.171
2005 Park S, Saven JG. Statistical and molecular dynamics studies of buried waters in globular proteins. Proteins. 60: 450-63. PMID 15937899 DOI: 10.1002/Prot.20511  0.169
2005 Park S, Saven JG. Statistical and molecular dynamics studies of buried waters in globular proteins. Proteins. 60: 450-63. PMID 15937899 DOI: 10.1002/Prot.20511  0.169
2023 Halaszynski NI, Saven JG, Pochan DJ, Kloxin CJ. Thermoresponsive Coiled-Coil Peptide-Polymer Grafts. Bioconjugate Chemistry. 34: 2001-2006. PMID 37874177 DOI: 10.1021/acs.bioconjchem.3c00367  0.167
2002 Kono H, Saven J. 3K1100 Comparison of Evolutionary and Computational Profiles of Proteins Seibutsu Butsuri. 42: S181. DOI: 10.2142/biophys.42.S181_1  0.165
2015 Ho J, Perez-Aguilar JM, Gao L, Saven JG, Matsunami H, Eckenhoff RG. Molecular recognition of ketamine by a subset of olfactory G protein-coupled receptors. Science Signaling. 8: ra33. PMID 25829447 DOI: 10.1126/Scisignal.2005912  0.156
2015 Ho J, Perez-Aguilar JM, Gao L, Saven JG, Matsunami H, Eckenhoff RG. Molecular recognition of ketamine by a subset of olfactory G protein-coupled receptors. Science Signaling. 8: ra33. PMID 25829447 DOI: 10.1126/Scisignal.2005912  0.156
2010 Park SJ, Kang SG, Fryd M, Saven JG, Park SJ. Highly tunable photoluminescent properties of amphiphilic conjugated block copolymers. Journal of the American Chemical Society. 132: 9931-3. PMID 20608674 DOI: 10.1021/Ja1004569  0.155
2010 Park SJ, Kang SG, Fryd M, Saven JG, Park SJ. Highly tunable photoluminescent properties of amphiphilic conjugated block copolymers. Journal of the American Chemical Society. 132: 9931-3. PMID 20608674 DOI: 10.1021/Ja1004569  0.155
2012 Perez-Aguilar JM, Saven JG, Liu R. Human μ Opioid Receptor Models with Evaluation of the Accuracy Using the Crystal Structure of the Murine μ Opioid Receptor. Journal of Anesthesia & Clinical Research. 3: 218. PMID 24527268 DOI: 10.4172/2155-6148.1000218  0.154
2012 Perez-Aguilar JM, Saven JG, Liu R. Human μ Opioid Receptor Models with Evaluation of the Accuracy Using the Crystal Structure of the Murine μ Opioid Receptor. Journal of Anesthesia & Clinical Research. 3: 218. PMID 24527268 DOI: 10.4172/2155-6148.1000218  0.154
2014 Lerner MB, Matsunaga F, Han GH, Hong SJ, Xi J, Crook A, Perez-Aguilar JM, Park YW, Saven JG, Liu R, Johnson AT. Scalable production of highly sensitive nanosensors based on graphene functionalized with a designed G protein-coupled receptor. Nano Letters. 14: 2709-14. PMID 24742304 DOI: 10.1021/Nl5006349  0.146
2014 Lerner MB, Matsunaga F, Han GH, Hong SJ, Xi J, Crook A, Perez-Aguilar JM, Park YW, Saven JG, Liu R, Johnson AT. Scalable production of highly sensitive nanosensors based on graphene functionalized with a designed G protein-coupled receptor. Nano Letters. 14: 2709-14. PMID 24742304 DOI: 10.1021/Nl5006349  0.146
2019 Liu R, Johnson ATC, Saven JG. Water Soluble G-protein Coupled Receptor Enabled Biosensors. Translational Perioperative and Pain Medicine. 6: 98-103. PMID 31828182 DOI: 10.31480/2330-4871/095  0.139
1996 Nelson JC, Schneider SD, Moore JS, Saven JG, Wolynes PG. Self-assembling helical phenylacetylene oligomers: Solid-phase synthesis and molecular mechanics calculations American Chemical Society, Polymer Preprints, Division of Polymer Chemistry. 37: 491-492.  0.131
2006 Park S, Szep S, Boder ET, Van Duyne GD, Saven JG. An interior water is essential for maintaining the structure of FKBP12 Aiche Annual Meeting, Conference Proceedings.  0.124
2015 Matsunaga F, Gao L, Huang XP, Saven JG, Roth BL, Liu R. Molecular interactions between general anesthetics and the 5HT2B receptor. Journal of Biomolecular Structure & Dynamics. 33: 211-8. PMID 24365264 DOI: 10.1080/07391102.2013.869483  0.097
2015 Matsunaga F, Gao L, Huang XP, Saven JG, Roth BL, Liu R. Molecular interactions between general anesthetics and the 5HT2B receptor. Journal of Biomolecular Structure & Dynamics. 33: 211-8. PMID 24365264 DOI: 10.1080/07391102.2013.869483  0.097
2015 Ouyang W, Saven JG, Subotnik JE. A Surface Hopping View of Electrochemistry: Non-Equilibrium Electronic Transport through an Ionic Solution with a Classical Master Equation Journal of Physical Chemistry C. 119: 20833-20844. DOI: 10.1021/Acs.Jpcc.5B06655  0.096
2011 Deria P, Glesner MG, Kang YK, Lee OS, Sinks L, Kim SH, Park TH, Bonnell DA, Saven JG, Therien MJ. Single-chain, helical wrapping of individualized, single-walled carbon nanotubes by ionic poly(aryleneethynylene)s: New compositions for photoinduced charge transfer reactions and photovoltaic applications Acs National Meeting Book of Abstracts.  0.081
2006 Park S, Saven JG. Simulation of pH-dependent edge strand rearrangement in human β-2 microglobulin Aiche Annual Meeting, Conference Proceedings.  0.07
1991 Saven JG, Skinner JL, Wright JR. Classical and quantum continuum percolation with hard core interactions The Journal of Chemical Physics. 94: 6153-6159.  0.051
2015 Gao L, Liu W, Lee OS, Dmochowski IJ, Saven JG. Xe affinities of water-soluble cryptophanes and the role of confined water Chemical Science. 6: 7238-7248. DOI: 10.1039/c5sc02401c  0.038
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