Year |
Citation |
Score |
2023 |
Khan F, Elgeti M, Grandfield S, Paz A, Naughton FB, Marcoline FV, Althoff T, Ermolova N, Wright EM, Hubbell WL, Grabe M, Abramson J. Membrane potential accelerates sugar uptake by stabilizing the outward facing conformation of the Na/glucose symporter vSGLT. Nature Communications. 14: 7511. PMID 37980423 DOI: 10.1038/s41467-023-43119-z |
0.319 |
|
2020 |
Zhou YC, Argudo D, Marcoline F, Grabe M. A Computational Model of Protein Induced Membrane Morphology with Geodesic Curvature Driven Protein-Membrane Interface. Journal of Computational Physics. 422. PMID 32921806 DOI: 10.1016/J.Jcp.2020.109755 |
0.367 |
|
2020 |
Bisignano P, Lee MA, George A, Zuckerman DM, Grabe M, Rosenberg JM. A kinetic mechanism for enhanced selectivity of membrane transport. Plos Computational Biology. 16: e1007789. PMID 32614861 DOI: 10.1371/Journal.Pcbi.1007789 |
0.387 |
|
2020 |
George A, Bisignano P, Rosenberg JM, Grabe M, Zuckerman DM. A systems-biology approach to molecular machines: Exploration of alternative transporter mechanisms. Plos Computational Biology. 16: e1007884. PMID 32614821 DOI: 10.1371/Journal.Pcbi.1007884 |
0.356 |
|
2020 |
Grabe M, Zuckerman DM, Rosenberg JM. EmrE reminds us to expect the unexpected in membrane transport. The Journal of General Physiology. 152. PMID 31816640 DOI: 10.1085/Jgp.201912467 |
0.378 |
|
2019 |
Singh A, Marcoline FV, Veshaguri S, Kao AW, Bruchez M, Mindell JA, Stamou D, Grabe M. Protons in small spaces: Discrete simulations of vesicle acidification. Plos Computational Biology. 15: e1007539. PMID 31869334 DOI: 10.1371/Journal.Pcbi.1007539 |
0.362 |
|
2019 |
Guerriero CJ, Gomez YK, Daskivich GJ, Reutter KR, Augustine AA, Weiberth KF, Nakatsukasa K, Grabe M, Brodsky JL. Harmonizing Experimental Data with Modeling to Predict Membrane Protein Insertion in Yeast. Biophysical Journal. PMID 31399214 DOI: 10.1016/J.Bpj.2019.07.013 |
0.347 |
|
2019 |
Argudo D, Capponi S, Bethel NP, Grabe M. A multiscale model of mechanotransduction by the ankyrin chains of the NOMPC channel. The Journal of General Physiology. PMID 30728217 DOI: 10.1085/Jgp.201812266 |
0.35 |
|
2019 |
Han TW, Ye W, Bethel NP, Zubia M, Kim A, Li KH, Burlingame AL, Grabe M, Jan YN, Jan LY. Chemically induced vesiculation as a platform for studying TMEM16F activity. Proceedings of the National Academy of Sciences of the United States of America. PMID 30622179 DOI: 10.1073/Pnas.1817498116 |
0.355 |
|
2018 |
Bisignano P, Ghezzi C, Jo H, Polizzi NF, Althoff T, Kalyanaraman C, Friemann R, Jacobson MP, Wright EM, Grabe M. Inhibitor binding mode and allosteric regulation of Na-glucose symporters. Nature Communications. 9: 5245. PMID 30532032 DOI: 10.1038/S41467-018-07700-1 |
0.366 |
|
2018 |
Bokoch MP, Jo H, Valcourt JR, Srinivasan Y, Pan AC, Capponi S, Grabe M, Dror RO, Shaw DE, DeGrado WF, Coughlin SR. Entry from the lipid bilayer: a possible pathway for inhibition of a peptide G protein-coupled receptor by a lipophilic small molecule. Biochemistry. PMID 30102523 DOI: 10.1021/Acs.Biochem.8B00577 |
0.318 |
|
2018 |
Wahlgren WY, Dunevall E, North RA, Paz A, Scalise M, Bisignano P, Bengtsson-Palme J, Goyal P, Claesson E, Caing-Carlsson R, Andersson R, Beis K, Nilsson UJ, Farewell A, Pochini L, ... ... Grabe M, et al. Substrate-bound outward-open structure of a Na-coupled sialic acid symporter reveals a new Na site. Nature Communications. 9: 1753. PMID 29717135 DOI: 10.1038/S41467-018-04045-7 |
0.332 |
|
2018 |
Paz A, Claxton DP, Kumar JP, Kazmier K, Bisignano P, Sharma S, Nolte SA, Liwag TM, Nayak V, Wright EM, Grabe M, Mchaourab HS, Abramson J. Conformational transitions of the sodium-dependent sugar transporter, vSGLT. Proceedings of the National Academy of Sciences of the United States of America. PMID 29507231 DOI: 10.1073/Pnas.1718451115 |
0.387 |
|
2018 |
Peters CJ, Gilchrist JM, Tien J, Bethel NP, Qi L, Chen T, Wang L, Jan YN, Grabe M, Jan LY. The Sixth Transmembrane Segment Is a Major Gating Component of the TMEM16A Calcium-Activated Chloride Channel. Neuron. PMID 29478917 DOI: 10.1016/J.Neuron.2018.01.048 |
0.354 |
|
2018 |
Han TW, Ye W, Bethel NP, Zubia M, Grabe M, Nung Jan Y, Jan LY. TMEM16F is a Calcium-Activated Phospholipid Scramblase Required for Chemically-Induced Giant Plasma Membrane Vesicles Biophysical Journal. 114: 610a. DOI: 10.1016/J.Bpj.2017.11.3335 |
0.308 |
|
2018 |
Grabe M, Bethel N. Mathematical Models of Protein Induced Membrane Deformation Biophysical Journal. 114: 609a. DOI: 10.1016/J.Bpj.2017.11.3328 |
0.345 |
|
2018 |
Bethel NP, Capponi S, Rosenberg JM, Grabe M. Measuring the Kinetics of Ion Permeation in Low Conductance Ion Channels Biophysical Journal. 114: 546a. DOI: 10.1016/J.Bpj.2017.11.2983 |
0.318 |
|
2018 |
Argudo D, Grabe M, Bethel N, Marcoline F. New Continuum Approaches to Study how Arbitrary Shape Proteins Induce Membrane Deformations Biophysical Journal. 114: 460a. DOI: 10.1016/J.Bpj.2017.11.2539 |
0.331 |
|
2017 |
Bergdoll LA, Lerch MT, Patrick JW, Belardo K, Altenbach C, Bisignano P, Laganowsky A, Grabe M, Hubbell WL, Abramson J. Protonation state of glutamate 73 regulates the formation of a specific dimeric association of mVDAC1. Proceedings of the National Academy of Sciences of the United States of America. PMID 29279396 DOI: 10.1073/Pnas.1715464115 |
0.355 |
|
2017 |
Guerriero CJ, Reutter KR, Augustine AA, Preston GM, Weiberth KF, Mackie TD, Cleveland-Rubeor HC, Bethel NP, Callenberg KM, Nakatsukasa K, Grabe M, Brodsky JL. Transmembrane helix hydrophobicity is an energetic barrier during the retrotranslocation of integral membrane ERAD substrates. Molecular Biology of the Cell. PMID 28539401 DOI: 10.1091/Mbc.E17-03-0184 |
0.391 |
|
2017 |
Argudo D, Bethel NP, Marcoline FV, Wolgemuth CW, Grabe M. New Continuum Approaches for Determining Protein-Induced Membrane Deformations. Biophysical Journal. 112: 2159-2172. PMID 28538153 DOI: 10.1016/J.Bpj.2017.03.040 |
0.461 |
|
2017 |
Bisignano P, Kalyanaraman C, Ghezzi C, Wright EM, Abramson J, Paz A, Jacobson MP, Friemann R, Grabe M. Structural Insights into Sodium-Dependent Sugar Transporters and their Inhibition Mechanism Biophysical Journal. 112: 128a. DOI: 10.1016/J.Bpj.2016.11.714 |
0.378 |
|
2017 |
Capponi S, Adelman J, Rosenberg J, Grabe M. Weighted Ensemble Approach to In Silico Measure the I-V Relationship in a K + Ion Channel Biophysical Journal. 112: 543a. DOI: 10.1016/J.Bpj.2016.11.2933 |
0.301 |
|
2017 |
Bergdoll LA, Lerch MT, Belardo K, Altenbach C, Bisignano P, Grabe M, Hubbell W, Abramson J. Ph-Induced Oligomerization of the Voltage Dependent Anion Channel Biophysical Journal. 112: 184a. DOI: 10.1016/J.Bpj.2016.11.1018 |
0.361 |
|
2016 |
Bethel NP, Grabe M. Atomistic insight into lipid translocation by a TMEM16 scramblase. Proceedings of the National Academy of Sciences of the United States of America. PMID 27872308 DOI: 10.1073/Pnas.1607574113 |
0.397 |
|
2016 |
Marcoline FV, Ishida Y, Mindell JA, Nayak S, Grabe M. A mathematical model of osteoclast acidification during bone resorption. Bone. PMID 27650914 DOI: 10.1016/J.Bone.2016.09.007 |
0.368 |
|
2016 |
Adelman JL, Ghezzi C, Bisignano P, Loo DD, Choe S, Abramson J, Rosenberg JM, Wright EM, Grabe M. Stochastic steps in secondary active sugar transport. Proceedings of the National Academy of Sciences of the United States of America. PMID 27325773 DOI: 10.1073/Pnas.1525378113 |
0.384 |
|
2016 |
Veshaguri S, Christensen SM, Kemmer GC, Ghale G, Møller MP, Lohr C, Christensen AL, Justesen BH, Jørgensen IL, Schiller J, Hatzakis NS, Grabe M, Pomorski TG, Stamou D. Direct observation of proton pumping by a eukaryotic P-type ATPase. Science (New York, N.Y.). 351: 1469-73. PMID 27013734 DOI: 10.1126/Science.Aad6429 |
0.364 |
|
2016 |
Argudo D, Bethel NP, Marcoline FV, Grabe M. Continuum descriptions of membranes and their interaction with proteins: towards chemically accurate models. Biochimica Et Biophysica Acta. PMID 26853937 DOI: 10.1016/J.Bbamem.2016.02.003 |
0.404 |
|
2016 |
Veshaguri S, Christensen SM, Kemmer GC, Møller MP, Ghale G, Lohr C, Christensen AL, Justesen BH, Jørgensen IL, Schiller J, Hatzakis NS, Grabe M, Pomorski TG, Stamou D. Resolving Active Ion Transport at the Single Molecule Level for the First Time Biophysical Journal. 110: 179a. DOI: 10.1016/J.Bpj.2015.11.997 |
0.397 |
|
2016 |
Bisignano P, Kalyanaraman C, Wright E, Abramson J, Jacobson M, Grabe M. Structure-Based Drug Design for Sodium-Dependent Glucose Transporters Biophysical Journal. 110: 136a. DOI: 10.1016/J.Bpj.2015.11.779 |
0.316 |
|
2015 |
Adelman JL, Grabe M. Simulating current-voltage relationships for a narrow ion channel using the weighted ensemble method. Journal of Chemical Theory and Computation. 11: 1907-1918. PMID 26392816 DOI: 10.1021/Ct501134S |
0.395 |
|
2015 |
Marcoline FV, Bethel N, Guerriero CJ, Brodsky JL, Grabe M. Membrane Protein Properties Revealed through Data-Rich Electrostatics Calculations. Structure (London, England : 1993). 23: 1526-37. PMID 26118532 DOI: 10.1016/J.Str.2015.05.014 |
0.43 |
|
2014 |
Joh NH, Wang T, Bhate MP, Acharya R, Wu Y, Grabe M, Hong M, Grigoryan G, DeGrado WF. De novo design of a transmembrane Zn²âº-transporting four-helix bundle. Science (New York, N.Y.). 346: 1520-4. PMID 25525248 DOI: 10.1126/Science.1261172 |
0.399 |
|
2014 |
Choudhary OP, Paz A, Adelman JL, Colletier JP, Abramson J, Grabe M. Structure-guided simulations illuminate the mechanism of ATP transport through VDAC1. Nature Structural & Molecular Biology. 21: 626-32. PMID 24908397 DOI: 10.1038/Nsmb.2841 |
0.422 |
|
2014 |
Hong T, Yang H, Zhang SS, Cho HC, Kalashnikova M, Sun B, Zhang H, Bhargava A, Grabe M, Olgin J, Gorelik J, Marbán E, Jan LY, Shaw RM. Cardiac BIN1 folds T-tubule membrane, controlling ion flux and limiting arrhythmia. Nature Medicine. 20: 624-32. PMID 24836577 DOI: 10.1038/Nm.3543 |
0.314 |
|
2014 |
Adelman JL, Sheng Y, Choe S, Abramson J, Wright EM, Rosenberg JM, Grabe M. Structural determinants of water permeation through the sodium-galactose transporter vSGLT. Biophysical Journal. 106: 1280-9. PMID 24655503 DOI: 10.1016/J.Bpj.2014.01.006 |
0.391 |
|
2014 |
Latorraca NR, Callenberg KM, Boyle JP, Grabe M. Continuum approaches to understanding ion and peptide interactions with the membrane. The Journal of Membrane Biology. 247: 395-408. PMID 24652510 DOI: 10.1007/S00232-014-9646-Z |
0.406 |
|
2014 |
Mukherjee S, Zheng H, Derebe MG, Callenberg KM, Partch CL, Rollins D, Propheter DC, Rizo J, Grabe M, Jiang QX, Hooper LV. Antibacterial membrane attack by a pore-forming intestinal C-type lectin. Nature. 505: 103-7. PMID 24256734 DOI: 10.1038/Nature12729 |
0.365 |
|
2014 |
Choudhary OP, Paz A, Adelman J, Colletier J, Abramson J, Grabe M. Characterizing ATP Permeation through the Voltage-Dependent Anion Channel VDAC Biophysical Journal. 106: 147a-148a. DOI: 10.1016/J.Bpj.2013.11.851 |
0.391 |
|
2014 |
Adelman JL, Grabe M. Simulating Current-Voltage Relationships for a Simple Ion Channel with All-Atom Resolution using the Weighted Ensemble Method Biophysical Journal. 106: 805a. DOI: 10.1016/J.Bpj.2013.11.4411 |
0.397 |
|
2014 |
Pendse P, Choe S, Adelman J, Abramson J, Wright E, Rosenberg J, Grabe M. Energetics of Urea Permeation through Sodium-Dependent Galactose Cotransporter vSGLT Biophysical Journal. 106: 365a. DOI: 10.1016/J.Bpj.2013.11.2072 |
0.361 |
|
2014 |
Adelman JL, Sheng Y, Choe S, Abramson J, Wright EM, Grabe M. Insight into the Mechanism of Water Permeation through the Sodium-Galactose Transporter vSGLT from Long Molecular Dynamics Simulations Biophysical Journal. 106: 365a. DOI: 10.1016/J.Bpj.2013.11.2071 |
0.366 |
|
2014 |
Latorraca NR, Callenberg KM, Boyle JP, Grabe M. Exploring Continuum Models of Ion and Peptide Interactions with the Membrane Biophysical Journal. 106: 222a. DOI: 10.1016/J.Bpj.2013.11.1301 |
0.408 |
|
2013 |
Ishida Y, Nayak S, Mindell JA, Grabe M. A model of lysosomal pH regulation. The Journal of General Physiology. 141: 705-20. PMID 23712550 DOI: 10.1085/Jgp.201210930 |
0.382 |
|
2012 |
Callenberg KM, Latorraca NR, Grabe M. Membrane bending is critical for the stability of voltage sensor segments in the membrane. The Journal of General Physiology. 140: 55-68. PMID 22732310 DOI: 10.1085/Jgp.201110766 |
0.423 |
|
2012 |
Callenberg KM, Choudhary OP, de Forest GL, Gohara DW, Baker NA, Grabe M. APBSmem: A Tool for the Analysis of Membrane Protein Electrostatics Biophysical Journal. 102: 682a. DOI: 10.1016/J.Bpj.2011.11.3706 |
0.418 |
|
2012 |
Adelman JL, Dale AL, Zwier MC, Bhatt D, Chong LT, Zuckerman DM, Grabe M. Insight into the Alternating Access Mechanism of the Sodium Symporter Mhp1 using Path Sampling Simulations Biophysical Journal. 102: 661a-662a. DOI: 10.1016/J.Bpj.2011.11.3604 |
0.405 |
|
2012 |
Choe S, Adelman JL, Rosenberg JM, Wright EM, Abramson J, Grabe M. Understanding Substrate Unbinding from the Sodium-Galactose Co-Transporter vSGLT based on 16 Microseconds of Molecular Simulation Biophysical Journal. 102: 661a. DOI: 10.1016/J.Bpj.2011.11.3603 |
0.369 |
|
2012 |
Latorraca NR, Callenberg KM, Grabe M. Exploring the Energetics of Membrane Protein Stability using a Deformable Model of the Membrane Biophysical Journal. 102: 622a. DOI: 10.1016/J.Bpj.2011.11.3390 |
0.439 |
|
2012 |
Choudhary OP, Adelman J, Abramson J, Grabe M. Characterizing ATP Permeation through mVDAC1 using Markov State Models (MSMs) Biophysical Journal. 102: 550a. DOI: 10.1016/J.Bpj.2011.11.3002 |
0.384 |
|
2012 |
Onyeozili NO, Callenberg KM, Xiao SC, Boyle JP, Grabe M. Determining the Binding Affinity of Toxoplasma ROP Proteins to a Membrane using Free Energy Calculations Biophysical Journal. 102: 472a. DOI: 10.1016/J.Bpj.2011.11.2588 |
0.406 |
|
2011 |
Adelman JL, Dale AL, Zwier MC, Bhatt D, Chong LT, Zuckerman DM, Grabe M. Simulations of the alternating access mechanism of the sodium symporter Mhp1. Biophysical Journal. 101: 2399-407. PMID 22098738 DOI: 10.1016/J.Bpj.2011.09.061 |
0.4 |
|
2011 |
Kashlan OB, Adelman JL, Okumura S, Blobner BM, Zuzek Z, Hughey RP, Kleyman TR, Grabe M. Constraint-based, homology model of the extracellular domain of the epithelial Na+ channel α subunit reveals a mechanism of channel activation by proteases. The Journal of Biological Chemistry. 286: 649-60. PMID 20974852 DOI: 10.1074/Jbc.M110.167098 |
0.385 |
|
2010 |
Watanabe A, Choe S, Chaptal V, Rosenberg JM, Wright EM, Grabe M, Abramson J. The mechanism of sodium and substrate release from the binding pocket of vSGLT. Nature. 468: 988-91. PMID 21131949 DOI: 10.1038/Nature09580 |
0.409 |
|
2010 |
Callenberg KM, Choudhary OP, de Forest GL, Gohara DW, Baker NA, Grabe M. APBSmem: a graphical interface for electrostatic calculations at the membrane. Plos One. 5. PMID 20949122 DOI: 10.1371/Journal.Pone.0012722 |
0.361 |
|
2010 |
Choe S, Rosenberg JM, Abramson J, Wright EM, Grabe M. Water permeation through the sodium-dependent galactose cotransporter vSGLT. Biophysical Journal. 99: L56-8. PMID 20923633 DOI: 10.1016/J.Bpj.2010.08.055 |
0.318 |
|
2010 |
Bailey MA, Grabe M, Devor DC. Characterization of the PCMBS-dependent modification of KCa3.1 channel gating. The Journal of General Physiology. 136: 367-87. PMID 20837673 DOI: 10.1085/Jgp.201010430 |
0.369 |
|
2010 |
Kashlan OB, Boyd CR, Argyropoulos C, Okumura S, Hughey RP, Grabe M, Kleyman TR. Allosteric inhibition of the epithelial Na+ channel through peptide binding at peripheral finger and thumb domains. The Journal of Biological Chemistry. 285: 35216-23. PMID 20817728 DOI: 10.1074/Jbc.M110.167064 |
0.342 |
|
2010 |
Choudhary OP, Ujwal R, Kowallis W, Coalson R, Abramson J, Grabe M. The electrostatics of VDAC: implications for selectivity and gating. Journal of Molecular Biology. 396: 580-92. PMID 20005234 DOI: 10.1016/J.Jmb.2009.12.006 |
0.392 |
|
2010 |
Choe S, Rosenberg J, Wright E, Abramson J, Grabe M. Computational Approaches to Understanding the Mechanism of Transport in the Na+/Galactose Co-Transporter vSGLT Biophysical Journal. 98: 434a. DOI: 10.1016/J.Bpj.2009.12.2355 |
0.405 |
|
2009 |
Choe S, Grabe M. Conformational dynamics of the inner pore helix of voltage-gated potassium channels. The Journal of Chemical Physics. 130: 215103. PMID 19508102 DOI: 10.1063/1.3138906 |
0.375 |
|
2008 |
Choe S, Hecht KA, Grabe M. A continuum method for determining membrane protein insertion energies and the problem of charged residues. The Journal of General Physiology. 131: 563-73. PMID 18474636 DOI: 10.1085/Jgp.200809959 |
0.398 |
|
2007 |
Grabe M, Lai HC, Jain M, Jan YN, Jan LY. Structure prediction for the down state of a potassium channel voltage sensor. Nature. 445: 550-3. PMID 17187053 DOI: 10.1038/Nature05494 |
0.362 |
|
2006 |
Bichet D, Grabe M, Jan YN, Jan LY. Electrostatic interactions in the channel cavity as an important determinant of potassium channel selectivity. Proceedings of the National Academy of Sciences of the United States of America. 103: 14355-60. PMID 16983069 DOI: 10.1073/Pnas.0606660103 |
0.375 |
|
2006 |
Grabe M, Bichet D, Qian X, Jan YN, Jan LY. K+ channel selectivity depends on kinetic as well as thermodynamic factors. Proceedings of the National Academy of Sciences of the United States of America. 103: 14361-6. PMID 16983068 DOI: 10.1073/Pnas.0606662103 |
0.375 |
|
2005 |
Lai HC, Grabe M, Jan YN, Jan LY. The S4 voltage sensor packs against the pore domain in the KAT1 voltage-gated potassium channel. Neuron. 47: 395-406. PMID 16055063 DOI: 10.1016/J.Neuron.2005.06.019 |
0.354 |
|
2004 |
Grabe M, Lecar H, Jan YN, Jan LY. A quantitative assessment of models for voltage-dependent gating of ion channels. Proceedings of the National Academy of Sciences of the United States of America. 101: 17640-5. PMID 15591352 DOI: 10.1073/Pnas.0408116101 |
0.417 |
|
2003 |
Lecar H, Larsson HP, Grabe M. Electrostatic model of S4 motion in voltage-gated ion channels. Biophysical Journal. 85: 2854-64. PMID 14581190 DOI: 10.1016/S0006-3495(03)74708-0 |
0.38 |
|
2003 |
Cohen BE, Grabe M, Jan LY. Answers and questions from the KvAP structures. Neuron. 39: 395-400. PMID 12895415 DOI: 10.1016/S0896-6273(03)00472-0 |
0.34 |
|
2003 |
Grabe M, Neu J, Oster G, Nollert P. Protein interactions and membrane geometry. Biophysical Journal. 84: 854-68. PMID 12547769 DOI: 10.1016/S0006-3495(03)74904-2 |
0.365 |
|
2002 |
Moore HP, Andresen JM, Eaton BA, Grabe M, Haugwitz M, Wu MM, Machen TE. Biosynthesis and secretion of pituitary hormones: dynamics and regulation. Archives of Physiology and Biochemistry. 110: 16-25. PMID 11935396 DOI: 10.1076/Apab.110.1.16.903 |
0.362 |
|
2001 |
Wu MM, Grabe M, Adams S, Tsien RY, Moore HP, Machen TE. Mechanisms of pH regulation in the regulated secretory pathway. The Journal of Biological Chemistry. 276: 33027-35. PMID 11402049 DOI: 10.1074/Jbc.M103917200 |
0.311 |
|
2001 |
Grabe M, Oster G. Regulation of organelle acidity. The Journal of General Physiology. 117: 329-44. PMID 11279253 DOI: 10.1085/Jgp.117.4.329 |
0.394 |
|
2000 |
Oster G, Wang H, Grabe M. How Fo-ATPase generates rotary torque. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 355: 523-8. PMID 10836505 DOI: 10.1098/Rstb.2000.0593 |
0.315 |
|
2000 |
Grabe M, Wang H, Oster G. The mechanochemistry of V-ATPase proton pumps. Biophysical Journal. 78: 2798-813. PMID 10827963 DOI: 10.1016/S0006-3495(00)76823-8 |
0.326 |
|
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