Matthew P. Hare - Publications

Affiliations: 
Behavior, Ecology, Evolution and Systematics University of Maryland, College Park, College Park, MD 
 2007- Natural Resources Cornell University, Ithaca, NY, United States 
Area:
Evolution and Development Biology, Genetics, Parasitology Biology
Website:
https://cals.cornell.edu/matthew-hare

55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Zhao H, Guo X, Wang W, Wang Z, Rawson P, Wilbur A, Hare M. Consequences of domestication in eastern oyster: Insights from whole genomic analyses. Evolutionary Applications. 17: e13710. PMID 38817396 DOI: 10.1111/eva.13710  0.657
2023 Puritz JB, Guo X, Hare M, He Y, Hillier LW, Jin S, Liu M, Lotterhos KE, Minx P, Modak T, Proestou D, Rice ES, Tomlinson C, Warren WC, Witkop E, et al. A second unveiling: Haplotig masking of the eastern oyster genome improves population-level inference. Molecular Ecology Resources. PMID 37186213 DOI: 10.1111/1755-0998.13801  0.621
2023 Guo X, Puritz JB, Wang Z, Proestou D, Allen S, Small J, Verbyla K, Zhao H, Haggard J, Chriss N, Zeng D, Lundgren K, Allam B, Bushek D, Gomez-Chiarri M, ... Hare M, et al. Development and Evaluation of High-Density SNP Arrays for the Eastern Oyster Crassostrea virginica. Marine Biotechnology (New York, N.Y.). PMID 36622459 DOI: 10.1007/s10126-022-10191-3  0.642
2020 McFarland K, Plough LV, Nguyen M, Hare MP. Are bivalves susceptible to domestication selection? Using starvation tolerance to test for potential trait changes in eastern oyster larvae. Plos One. 15: e0230222. PMID 32603332 DOI: 10.1371/Journal.Pone.0230222  0.358
2020 Mao X, Augyte S, Huang M, Hare MP, Bailey D, Umanzor S, Marty-Rivera M, Robbins KR, Yarish C, Lindell S, Jannink J. Population Genetics of Sugar Kelp Throughout the Northeastern United States Using Genome-Wide Markers Frontiers in Marine Science. 7. DOI: 10.3389/Fmars.2020.00694  0.537
2020 Bruce SA, Kutsumi Y, Maaren CV, Hare MP. Stocked‐Fish Introgression into Wild Brook Trout Populations Depends on Habitat Transactions of the American Fisheries Society. 149: 427-442. DOI: 10.1002/Tafs.10239  0.42
2018 McFarland K, Hare MP. Restoring oysters to urban estuaries: Redefining habitat quality for eastern oyster performance near New York City. Plos One. 13: e0207368. PMID 30444890 DOI: 10.1371/Journal.Pone.0207368  0.393
2018 George EM, Hare MP, Crabtree DL, Lantry BF, Rudstam LG. Comparison of genetic and visual identification of cisco and lake whitefish larvae from Chaumont Bay, Lake Ontario Canadian Journal of Fisheries and Aquatic Sciences. 75: 1329-1336. DOI: 10.1139/Cjfas-2017-0186  0.373
2017 Linden DW, Fuller AK, Royle JA, Hare MP. Examining the occupancy–density relationship for a low‐density carnivore Journal of Applied Ecology. 54: 2043-2052. DOI: 10.1111/1365-2664.12883  0.368
2017 Bruce SA, Hare MP, Mitchell MW, Wright JJ. Confirmation of a unique and genetically diverse ‘heritage’ strain of brook trout (Salvelinus fontinalis) in a remote Adirondack watershed Conservation Genetics. 19: 71-83. DOI: 10.1007/S10592-017-1019-6  0.5
2017 Sun CC, Fuller AK, Hare MP, Hurst JE. Evaluating population expansion of black bears using spatial capture-recapture The Journal of Wildlife Management. 81: 814-823. DOI: 10.1002/Jwmg.21248  0.451
2016 Sethi SA, Linden D, Wenburg J, Lewis C, Lemons P, Fuller A, Hare MP. Accurate recapture identification for genetic mark-recapture studies with error-tolerant likelihood-based match calling and sample clustering. Royal Society Open Science. 3: 160457. PMID 28083094 DOI: 10.1098/Rsos.160457  0.36
2016 Fuller AK, Sutherland CS, Royle JA, Hare MP. Estimating population density and connectivity of American mink using spatial capture-recapture. Ecological Applications : a Publication of the Ecological Society of America. 26: 1125-35. PMID 27509753 DOI: 10.1890/15-0315  0.352
2015 Eierman LE, Hare MP. Reef-Specific Patterns of Gene Expression Plasticity in Eastern Oysters (Crassostrea virginica). The Journal of Heredity. PMID 26245921 DOI: 10.1093/Jhered/Esv057  0.403
2015 Sutherland JW, Acker FW, Bloomfield JA, Boylen CW, Charles DF, Daniels RA, Eichler LW, Farrell JL, Feranec RS, Hare MP, Kanfoush SL, Preall RJ, Quinn SO, Rowell HC, Schoch WF, et al. Brooktrout Lake case study: biotic recovery from acid deposition 20 years after the 1990 Clean Air Act Amendments. Environmental Science & Technology. 49: 2665-74. PMID 25621941 DOI: 10.1021/Es5036865  0.307
2014 Ilut DC, Nydam ML, Hare MP. Defining loci in restriction-based reduced representation genomic data from nonmodel species: sources of bias and diagnostics for optimal clustering. Biomed Research International. 2014: 675158. PMID 25057498 DOI: 10.1155/2014/675158  0.392
2014 Anderson JD, Karel WJ, Mace CE, Bartram BL, Hare MP. Spatial genetic features of eastern oysters (Crassostrea virginica Gmelin) in the Gulf of Mexico: northward movement of a secondary contact zone. Ecology and Evolution. 4: 1671-85. PMID 24967084 DOI: 10.1002/Ece3.1064  0.504
2014 Eierman LE, Hare MP. Transcriptomic analysis of candidate osmoregulatory genes in the eastern oyster Crassostrea virginica. Bmc Genomics. 15: 503. PMID 24950855 DOI: 10.1186/1471-2164-15-503  0.445
2014 Thompson PC, Rosenthal BM, Hare MP. Hybridization between previously isolated ancestors may explain the persistence of exactly two ancient lineages in the genome of the oyster parasite Perkinsus marinus. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 24: 167-76. PMID 24681265 DOI: 10.1016/J.Meegid.2014.03.003  0.496
2014 Burford MO, Scarpa J, Cook BJ, Hare MP. Local adaptation of a marine invertebrate with a high dispersal potential: Evidence from a reciprocal transplant experiment of the eastern oyster Crassostrea virginica Marine Ecology Progress Series. 505: 161-175. DOI: 10.3354/Meps10796  0.412
2014 Thompson PC, Rosenthal BM, Hare MP. Microsatellite genotypes reveal some long-distance gene flow in perkinsus marinus, a major pathogen of the eastern oyster, Crassostrea virginica (Gmelin) Journal of Shellfish Research. 33: 195-206. DOI: 10.2983/035.033.0119  0.358
2014 Hare MP, Borchardt-Wier H. Microsatellite primers designed from pyrosequences to compare two subspecies of surf clam, Spisula solidissima Conservation Genetics Resources. 6: 1039-1041. DOI: 10.1007/S12686-014-0280-Y  0.387
2013 Eierman LE, Hare MP. Survival of oyster larvae in different salinities depends on source population within an estuary Journal of Experimental Marine Biology and Ecology. 449: 61-68. DOI: 10.1016/J.Jembe.2013.08.015  0.462
2012 Zhang H, Hare MP. Identifying and reducing AFLP genotyping error: an example of tradeoffs when comparing population structure in broadcast spawning versus brooding oysters. Heredity. 108: 616-25. PMID 22274647 DOI: 10.1038/Hdy.2011.132  0.422
2012 Kruse I, Hare MP, Hines AH. Genetic relationships of the marine invasive crab parasite Loxothylacus panopaei: An analysis of DNA sequence variation, host specificity, and distributional range Biological Invasions. 14: 701-715. DOI: 10.1007/S10530-011-0111-Y  0.365
2011 Chen G, Hare MP. Cryptic diversity and comparative phylogeography of the estuarine copepod Acartia tonsa on the US Atlantic coast. Molecular Ecology. 20: 2425-41. PMID 21521392 DOI: 10.1111/J.1365-294X.2011.05079.X  0.401
2011 Hare MP, Nunney L, Schwartz MK, Ruzzante DE, Burford M, Waples RS, Ruegg K, Palstra F. Understanding and estimating effective population size for practical application in marine species management. Conservation Biology : the Journal of the Society For Conservation Biology. 25: 438-49. PMID 21284731 DOI: 10.1111/J.1523-1739.2010.01637.X  0.376
2011 Thompson PC, Rosenthal BM, Hare MP. An evolutionary legacy of sex and clonal reproduction in the protistan oyster parasite Perkinsus marinus. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 11: 598-609. PMID 21256249 DOI: 10.1016/J.Meegid.2011.01.008  0.475
2011 Thompson PC, Rosenthal BM, Hare MP. Erratum to “An evolutionary legacy of sex and clonal reproduction in the protistan oyster parasite Perkinsus marinus” [Infect. Genet. Evol. 11(3) (2011) 598–609] Infection, Genetics and Evolution. 11: 1823. DOI: 10.1016/J.Meegid.2011.07.004  0.308
2010 Zhang H, Scarpa J, Hare MP. Differential fertilization success between two populations of eastern oyster, Crassostrea virginica. The Biological Bulletin. 219: 142-50. PMID 20972259 DOI: 10.1086/Bblv219N2P142  0.434
2010 Hare MP, Weinberg J, Peterfalvy O, Davidson M. The "southern" surfclam (Spisula Solidissima Similis) found north of its reported range: A commercially harvested population in long island sound, New York Journal of Shellfish Research. 29: 799-807. DOI: 10.2983/035.029.0413  0.362
2009 Robinson TB, Griffiths CL, Tonin A, Bloomer P, Hare MP. Naturalized Populations Of Oysters, Crassostrea Gigas Along The South African Coast: Distribution, Abundance And Population Structure Journal of Shellfish Research. 24: 443-450. DOI: 10.2983/0730-8000(2005)24[443:Npoocg]2.0.Co;2  0.409
2008 Chen G, Hare MP. Cryptic ecological diversification of a planktonic estuarine copepod, Acartia tonsa. Molecular Ecology. 17: 1451-68. PMID 18248575 DOI: 10.1111/J.1365-294X.2007.03657.X  0.493
2008 Carlsson J, Carnegie RB, Cordes JF, Hare MP, Leggett AT, Reece KS. Evaluating recruitment contribution of a selectively bred aquaculture line of the oyster, Crassostrea virginica used in restoration efforts Journal of Shellfish Research. 27: 1117-1124. DOI: 10.2983/0730-8000-27.5.1117  0.354
2008 Wangchuk T, Inouye DW, Hare MP. The emergence of an endangered species: Evolution and phylogeny of the Trachypithecus geei of Bhutan International Journal of Primatology. 29: 565-582. DOI: 10.1007/S10764-008-9258-5  0.44
2007 Kruse I, Hare MP. Genetic diversity and expanding nonindigenous range of the rhizocephalan Loxothylacus panopaei parasitizing mud crabs in the western north Atlantic. The Journal of Parasitology. 93: 575-82. PMID 17626349 DOI: 10.1645/Ge-888R.1  0.468
2007 Palumbi SR, Cipriano F, Hare MP. PREDICTING NUCLEAR GENE COALESCENCE FROM MITOCHONDRIAL DATA: THE THREE-TIMES RULE Evolution. 55: 859-868. DOI: 10.1111/j.0014-3820.2001.tb00603.x  0.462
2006 Murray MC, Hare MP. A genomic scan for divergent selection in a secondary contact zone between Atlantic and Gulf of Mexico oysters, Crassostrea virginica. Molecular Ecology. 15: 4229-42. PMID 17054515 DOI: 10.1111/J.1365-294X.2006.03060.X  0.436
2006 Rose CG, Paynter KT, Hare MP. Isolation by distance in the eastern oyster, Crassostrea virginica, in Chesapeake Bay. The Journal of Heredity. 97: 158-70. PMID 16489144 DOI: 10.1093/Jhered/Esj019  0.748
2006 Hare MP, Allen SK, Bloomer P, Camara MD, Carnegie RB, Murfree J, Luckenbach M, Meritt D, Morrison C, Paynter K, Reece KS, Rose CG. A genetic test for recruitment enhancement in Chesapeake Bay oysters, Crassostrea virginica, after population supplementation with a disease tolerant strain Conservation Genetics. 7: 717-734. DOI: 10.1007/S10592-005-9108-3  0.74
2005 Hare MP, Guenther C, Fagan WF. Nonrandom larval dispersal can steepen marine clines. Evolution; International Journal of Organic Evolution. 59: 2509-17. PMID 16526499 DOI: 10.1554/05-150.1  0.358
2005 Gaines CA, Hare MP, Beck SE, Rosenbaum HC. Nuclear markers confirm taxonomic status and relationships among highly endangered and closely related right whale species. Proceedings. Biological Sciences / the Royal Society. 272: 533-42. PMID 15846869 DOI: 10.1098/Rspb.2004.2895  0.418
2005 Hare MP, Guenther C, Fagan WF. Nonrandom Larval Dispersal Can Steepen Marine Clines Evolution. 59: 2509-2517. DOI: 10.1111/J.0014-3820.2005.Tb00964.X  0.458
2005 Hare MP, Weinberg JR. Phylogeography of surfclams, Spisula solidissima, in the western North Atlantic based on mitochondrial and nuclear DNA sequences Marine Biology. 146: 707-716. DOI: 10.1007/S00227-004-1471-Y  0.463
2003 Hare MP, Palumbi SR. High intron sequence conservation across three mammalian orders suggests functional constraints. Molecular Biology and Evolution. 20: 969-78. PMID 12716984 DOI: 10.1093/Molbev/Msg111  0.556
2002 Hare MP, Cipriano F, Palumbi SR. Genetic evidence on the demography of speciation in allopatric dolphin species. Evolution; International Journal of Organic Evolution. 56: 804-16. PMID 12038538 DOI: 10.1111/J.0014-3820.2002.Tb01391.X  0.654
2001 Palumbi SR, Cipriano F, Hare MP. Predicting nuclear gene coalescence from mitochondrial data: the three-times rule. Evolution; International Journal of Organic Evolution. 55: 859-68. PMID 11430646 DOI: 10.1554/0014-3820(2001)055[0859:Pngcfm]2.0.Co;2  0.61
2001 Hare MP. Prospects for nuclear gene phylogeography Trends in Ecology & Evolution. 16: 700-706. DOI: 10.1016/S0169-5347(01)02326-6  0.465
2000 Hare MP, Palumbi SR, Butman CA. Single-step species identification of bivalve larvae using multiplex polymerase chain reaction Marine Biology. 137: 953-961. DOI: 10.1007/S002270000402  0.553
1999 Hare MP, Palumbi SR. The accuracy of heterozygous base calling from diploid sequence and resolution of haplotypes using allele-specific sequencing. Molecular Ecology. 8: 1750-2. PMID 10583838 DOI: 10.1046/J.1365-294X.1999.00738-1.X  0.54
1998 Hare MP, Avise JC. Population structure in the American oyster as inferred by nuclear gene genealogies. Molecular Biology and Evolution. 15: 119-28. PMID 9491610 DOI: 10.1093/Oxfordjournals.Molbev.A025908  0.673
1997 Ortí G, Hare MP, Avise JC. Detection and isolation of nuclear haplotypes by PCR-SSCP. Molecular Ecology. 6: 575-80. PMID 9200830 DOI: 10.1046/J.1365-294X.1997.00212.X  0.704
1996 Hare MP, Avise JC. MOLECULAR GENETIC ANALYSIS OF A STEPPED MULTILOCUS CLINE IN THE AMERICAN OYSTER (CRASSOSTREA VIRGINICA). Evolution; International Journal of Organic Evolution. 50: 2305-2315. PMID 28565681 DOI: 10.1111/J.1558-5646.1996.Tb03618.X  0.639
1996 Hare MP, Karl SA, Avise JC. Anonymous nuclear DNA markers in the American oyster and their implications for the heterozygote deficiency phenomenon in marine bivalves. Molecular Biology and Evolution. 13: 334-45. PMID 8587499 DOI: 10.1093/Oxfordjournals.Molbev.A025593  0.701
1992 Hare MP, Shields GF. Mitochondrial-DNA Variation in the Polytypic Alaskan Song Sparrow The Auk. 109: 126-132. DOI: 10.2307/4088273  0.494
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