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Daniel B. Sloan - Publications

Affiliations: 
2005-2011 Department of Biology University of Virginia, Charlottesville, VA 
 2011-2013 Department of Ecology and Evolutionary Biology Yale University, New Haven, CT 
 2013- Department of Biology Colorado State University, Fort Collins, CO 
Area:
genomics, phylogenetics, mitochondria, chloroplasts, mutation rates
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110 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2025 Waneka G, Broz AK, Wold-McGimsey F, Zou Y, Wu Z, Sloan DB. Disruption of recombination machinery alters the mutational landscape in plant organellar genomes. G3 (Bethesda, Md.). PMID 39946260 DOI: 10.1093/g3journal/jkaf029  0.855
2025 Moraga C, Branco C, Rougemont Q, Jedlička P, Mendoza-Galindo E, Veltsos P, Hanique M, Rodríguez de la Vega RC, Tannier E, Liu X, Lemaitre C, Fields PD, Cruaud C, Labadie K, Belser C, ... ... Sloan DB, et al. The genome and its giant Y chromosome. Science (New York, N.Y.). 387: 630-636. PMID 39913565 DOI: 10.1126/science.adj7430  0.722
2025 Warren JM, Ceriotti LF, Sanchez-Puerta MV, Sloan DB. Fungal-derived tRNAs are expressed and aminoacylated in orchid mitochondria. Molecular Biology and Evolution. PMID 39882964 DOI: 10.1093/molbev/msaf025  0.859
2025 Broz AK, Hodous MM, Zou Y, Vail PC, Wu Z, Sloan DB. Flipping the switch on some of the slowest mutating genomes: Direct measurements of plant mitochondrial and plastid mutation rates in mutants. Biorxiv : the Preprint Server For Biology. PMID 39829752 DOI: 10.1101/2025.01.08.631957  0.821
2024 DeTar RA, Chustecki JM, Martinez-Hottovy A, Ceriotti LF, Broz AK, Lou X, Sanchez-Puerta MV, Elowsky C, Christensen AC, Sloan DB. Photosynthetic demands on translational machinery drive retention of redundant tRNA metabolism in plant organelles. Proceedings of the National Academy of Sciences of the United States of America. 121: e2421485121. PMID 39693336 DOI: 10.1073/pnas.2421485121  0.844
2024 Sloan DB, Broz AK, Kuster SA, Muthye V, Peñafiel-Ayala A, Marron JR, Lavrov DV, Brieba LG. Expansion of the MutS gene family in plants. The Plant Cell. PMID 39692564 DOI: 10.1093/plcell/koae277  0.826
2024 Ceriotti LF, Warren JM, Sanchez-Puerta MV, Sloan DB. The landscape of Arabidopsis tRNA aminoacylation. The Plant Journal : For Cell and Molecular Biology. 120: 2784-2802. PMID 39555621 DOI: 10.1111/tpj.17146  0.827
2024 Waneka G, Pate B, Monroe JG, Sloan DB. Exploring the relationship between gene expression and low frequency somatic mutations in Arabidopsis with Duplex Sequencing. Genome Biology and Evolution. PMID 39365161 DOI: 10.1093/gbe/evae213  0.806
2024 Conover JL, Grover CE, Sharbrough J, Sloan DB, Peterson DG, Wendel JF. Little evidence for homoeologous gene conversion and homoeologous exchange events in Gossypium allopolyploids. American Journal of Botany. 111: e16386. PMID 39107998 DOI: 10.1002/ajb2.16386  0.756
2024 Sloan DB, Broz AK, Kuster SA, Muthye V, Peñafiel-Ayala A, Marron JR, Lavrov DV, Brieba LG. Expansion of the MutS Gene Family in Plants. Biorxiv : the Preprint Server For Biology. PMID 39071318 DOI: 10.1101/2024.07.17.603841  0.824
2024 Waneka G, Broz AK, Wold-McGimsey F, Zou Y, Wu Z, Sloan DB. Disruption of recombination machinery alters the mutational landscape in plant organellar genomes. Biorxiv : the Preprint Server For Biology. PMID 38895361 DOI: 10.1101/2024.06.03.597120  0.854
2024 Waneka G, Stewart J, Anderson JR, Li W, Wilusz J, Argueso JL, Sloan DB. UV damage induces production of mitochondrial DNA fragments with specific length profiles. Genetics. PMID 38722894 DOI: 10.1093/genetics/iyae070  0.801
2024 Zwonitzer KD, Tressel LG, Wu Z, Kan S, Broz AK, Mower JP, Ruhlman TA, Jansen RK, Sloan DB, Havird JC. Genome copy number predicts extreme evolutionary rate variation in plant mitochondrial DNA. Proceedings of the National Academy of Sciences of the United States of America. 121: e2317240121. PMID 38427600 DOI: 10.1073/pnas.2317240121  0.778
2024 Waneka G, Pate B, Monroe JG, Sloan DB. Investigating low frequency somatic mutations in with Duplex Sequencing. Biorxiv : the Preprint Server For Biology. PMID 38352550 DOI: 10.1101/2024.01.31.578196  0.803
2024 Lian Q, Li S, Kan S, Liao X, Huang S, Sloan DB, Wu Z. Association analysis provides insights into plant mitonuclear interactions. Molecular Biology and Evolution. PMID 38324417 DOI: 10.1093/molbev/msae028  0.596
2024 Sloan DB, Conover JL, Grover CE, Wendel JF, Sharbrough J. Polyploid plants take cytonuclear perturbations in stride. The Plant Cell. PMID 38267606 DOI: 10.1093/plcell/koae021  0.815
2023 Waneka G, Stewart J, Anderson JR, Li W, Wilusz J, Argueso JL, Sloan DB. UV damage induces production of mitochondrial DNA fragments with specific length profiles. Biorxiv : the Preprint Server For Biology. PMID 37986892 DOI: 10.1101/2023.11.07.566130  0.799
2023 Broz AK, Sloan DB, Johnston IG. Stochastic organelle genome segregation through Arabidopsis development and reproduction. The New Phytologist. PMID 37925790 DOI: 10.1111/nph.19288  0.341
2023 Fields PD, Weber MM, Waneka G, Broz AK, Sloan DB. Chromosome-Level Genome Assembly for the Angiosperm Silene conica. Genome Biology and Evolution. 15. PMID 37862134 DOI: 10.1093/gbe/evad192  0.839
2023 Fields PD, Weber MM, Waneka G, Broz AK, Sloan DB. Chromosome-level genome assembly for the angiosperm . Biorxiv : the Preprint Server For Biology. PMID 37732249 DOI: 10.1101/2023.09.05.556365  0.839
2023 Warren JM, Broz AK, Martinez-Hottovy A, Elowsky C, Christensen AC, Sloan DB. Rewiring of aminoacyl-tRNA synthetase localization and interactions in plants with extensive mitochondrial tRNA gene loss. Molecular Biology and Evolution. PMID 37463427 DOI: 10.1093/molbev/msad163  0.855
2023 Postel Z, Sloan DB, Gallina S, Godé C, Schmitt E, Mangenot S, Drouard L, Varré JS, Touzet P. The decoupled evolution of the organellar genomes of Silene nutans leads to distinct roles in the speciation process. The New Phytologist. PMID 37212044 DOI: 10.1111/nph.18966  0.492
2023 Sloan DB, DeTar RA, Warren JM. Aminoacyl-tRNA synthetase evolution within the dynamic tripartite translation system of plant cells. Genome Biology and Evolution. PMID 36951086 DOI: 10.1093/gbe/evad050  0.841
2023 Sloan DB, Warren JM, Williams AM, Kuster SA, Forsythe ES. Incompatibility and Interchangeability in Molecular Evolution. Genome Biology and Evolution. 15. PMID 36583227 DOI: 10.1093/gbe/evac184  0.788
2022 Zou Y, Zhu W, Sloan DB, Wu Z. Long-read sequencing characterizes mitochondrial and plastid genome variants in Arabidopsis msh1 mutants. The Plant Journal : For Cell and Molecular Biology. PMID 36097957 DOI: 10.1111/tpj.15976  0.627
2022 Broz AK, Keene A, Fernandes Gyorfy M, Hodous M, Johnston IG, Sloan DB. Sorting of mitochondrial and plastid heteroplasmy in is extremely rapid and depends on MSH1 activity. Proceedings of the National Academy of Sciences of the United States of America. 119: e2206973119. PMID 35969753 DOI: 10.1073/pnas.2206973119  0.535
2022 Grover CE, Forsythe ES, Sharbrough J, Miller ER, Conover JL, DeTar RA, Chavarro C, Arick MA, Peterson DG, Leal-Bertioli SCM, Sloan DB, Wendel JF. Variation in cytonuclear expression accommodation among allopolyploid plants. Genetics. PMID 35951749 DOI: 10.1093/genetics/iyac118  0.808
2022 Forsythe ES, Grover CE, Miller ER, Conover JL, Arick MA, Chavarro MCF, Leal-Bertioli SCM, Peterson DG, Sharbrough J, Wendel JF, Sloan DB. Organellar transcripts dominate the cellular mRNA pool across plants of varying ploidy levels. Proceedings of the National Academy of Sciences of the United States of America. 119: e2204187119. PMID 35858449 DOI: 10.1073/pnas.2204187119  0.855
2022 Fields PD, Waneka G, Naish M, Schatz MC, Henderson IR, Sloan DB. Complete sequence of a 641-kb insertion of mitochondrial DNA in the Arabidopsis thaliana nuclear genome. Genome Biology and Evolution. PMID 35446419 DOI: 10.1093/gbe/evac059  0.855
2022 Sharbrough J, Conover JL, Fernandes Gyorfy M, Grover CE, Miller ER, Wendel JF, Sloan DB. Global Patterns of Subgenome Evolution in Organelle-Targeted Genes of Six Allotetraploid Angiosperms. Molecular Biology and Evolution. 39. PMID 35383845 DOI: 10.1093/molbev/msac074  0.817
2022 Rei Liao JY, Friso G, Forsythe ES, Michel EJS, Williams AM, Boguraev SS, Ponnala L, Sloan DB, van Wijk KJ. Proteomics, phylogenetics, and co-expression analyses indicate novel interactions in the plastid CLP chaperone-protease system. The Journal of Biological Chemistry. 101609. PMID 35065075 DOI: 10.1016/j.jbc.2022.101609  0.791
2022 Abdel-Ghany SE, LaManna LM, Harroun HT, Maliga P, Sloan DB. Rapid sequence evolution is associated with genetic incompatibilities in the plastid Clp complex. Plant Molecular Biology. PMID 35039977 DOI: 10.1007/s11103-022-01241-4  0.447
2022 Williams AM, Carter OG, Forsythe ES, Mendoza HK, Sloan DB. Gene duplication and rate variation in the evolution of plastid ACCase and Clp genes in angiosperms. Molecular Phylogenetics and Evolution. 107395. PMID 35033670 DOI: 10.1016/j.ympev.2022.107395  0.843
2021 Waneka G, Svendsen JM, Havird JC, Sloan DB. Mitochondrial mutations in Caenorhabditis elegans show signatures of oxidative damage and an AT-bias. Genetics. 219. PMID 34849888 DOI: 10.1093/genetics/iyab116  0.817
2021 Williams AM, Itgen MW, Broz AK, Carter OG, Sloan DB. Long-read transcriptome and other genomic resources for the angiosperm Silene noctiflora. G3 (Bethesda, Md.). 11. PMID 34849814 DOI: 10.1093/g3journal/jkab189  0.844
2021 Warren JM, Salinas-Giegé T, Triant DA, Taylor DR, Drouard L, Sloan DB. Rapid shifts in mitochondrial tRNA import in a plant lineage with extensive mitochondrial tRNA gene loss. Molecular Biology and Evolution. PMID 34436590 DOI: 10.1093/molbev/msab255  0.861
2021 Fernandes Gyorfy M, Miller ER, Conover JL, Grover CE, Wendel JF, Sloan DB, Sharbrough J. Nuclear-cytoplasmic balance: whole genome duplications induce elevated organellar genome copy number. The Plant Journal : For Cell and Molecular Biology. PMID 34309123 DOI: 10.1111/tpj.15436  0.797
2021 Forsythe ES, Williams AM, Sloan DB. Genome-wide signatures of plastid-nuclear coevolution point to repeated perturbations of plastid proteostasis systems across angiosperms. The Plant Cell. PMID 33764472 DOI: 10.1093/plcell/koab021  0.861
2021 Broz AK, Waneka G, Wu Z, Gyorfy MF, Sloan DB. Detecting de novo mitochondrial mutations in angiosperms with highly divergent evolutionary rates. Genetics. PMID 33704433 DOI: 10.1093/genetics/iyab039  0.855
2021 Warren JM, Sloan DB. Hopeful monsters: unintended sequencing of famously malformed mite mitochondrial tRNAs reveals widespread expression and processing of sense-antisense pairs. Nar Genomics and Bioinformatics. 3: lqaa111. PMID 33575653 DOI: 10.1093/nargab/lqaa111  0.851
2020 Waneka G, Vasquez YM, Bennett GM, Sloan DB. Mutational pressure drives differential genome conservation in two bacterial endosymbionts of sap feeding insects. Genome Biology and Evolution. PMID 33275136 DOI: 10.1093/gbe/evaa254  0.841
2020 Warren JM, Salinas-Giegé T, Hummel G, Coots NL, Svendsen JM, Brown KC, Drouard L, Sloan DB. Combining tRNA sequencing methods to characterize plant tRNA expression and post-transcriptional modification. Rna Biology. 1-15. PMID 32715941 DOI: 10.1080/15476286.2020.1792089  0.821
2020 Wu Z, Waneka G, Broz AK, King CR, Sloan DB. is required for maintenance of the low mutation rates in plant mitochondrial and plastid genomes. Proceedings of the National Academy of Sciences of the United States of America. PMID 32601224 DOI: 10.1073/Pnas.2001998117  0.86
2020 Forsythe ES, Sloan DB, Beilstein MA. Divergence-based introgression polarization. Genome Biology and Evolution. PMID 32219392 DOI: 10.1093/Gbe/Evaa053  0.794
2020 Warren JM, Sloan DB. Interchangeable parts: The evolutionarily dynamic tRNA population in plant mitochondria. Mitochondrion. PMID 32184120 DOI: 10.1016/J.Mito.2020.03.007  0.858
2020 Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, ... ... Sloan DB, et al. Gene content evolution in the arthropods. Genome Biology. 21: 15. PMID 31969194 DOI: 10.1186/S13059-019-1925-7  0.506
2020 Wu Z, Waneka G, Sloan DB. The Tempo and Mode of Angiosperm Mitochondrial Genome Divergence Inferred from Intraspecific Variation in . G3 (Bethesda, Md.). PMID 31964685 DOI: 10.1534/G3.119.401023  0.851
2019 Springer MS, Molloy EK, Sloan DB, Simmons MP, Gatesy J. ILS-Aware Analysis of Low-Homoplasy Retroelement Insertions: Inference of Species Trees and Introgression Using Quartets. The Journal of Heredity. PMID 31837265 DOI: 10.1093/Jhered/Esz076  0.317
2019 Patterson EL, Saski CA, Sloan DB, Tranel PJ, Westra P, Gaines TA. The Draft Genome of Kochia scoparia and the Mechanism of Glyphosate Resistance via Transposon-Mediated EPSPS Tandem Gene Duplication. Genome Biology and Evolution. PMID 31518388 DOI: 10.1093/Gbe/Evz198  0.408
2019 Forsythe ES, Sharbrough J, Havird JC, Warren JM, Sloan DB. CyMIRA: The Cytonuclear Molecular Interactions Reference for Arabidopsis. Genome Biology and Evolution. PMID 31282937 DOI: 10.1093/Gbe/Evz144  0.829
2019 Havird JC, Noe GR, Link L, Torres A, Logan DC, Sloan DB, Chicco AJ. Do angiosperms with highly divergent mitochondrial genomes have altered mitochondrial function? Mitochondrion. PMID 31229574 DOI: 10.1016/J.Mito.2019.06.005  0.786
2019 Gatesy J, Sloan DB, Warren JM, Baker RH, Simmons MP, Springer MS. Partitioned coalescence support reveals biases in species-tree methods and detects gene trees that determine phylogenomic conflicts. Molecular Phylogenetics and Evolution. 106539. PMID 31226465 DOI: 10.1016/J.Ympev.2019.106539  0.814
2019 Havird JC, Forsythe ES, Williams AM, Werren JH, Dowling DK, Sloan DB. Selfish Mitonuclear Conflict. Current Biology : Cb. 29: R496-R511. PMID 31163164 DOI: 10.1016/J.Cub.2019.03.020  0.838
2018 Hill GE, Havird JC, Sloan DB, Burton RS, Greening C, Dowling DK. Assessing the fitness consequences of mitonuclear interactions in natural populations. Biological Reviews of the Cambridge Philosophical Society. PMID 30588726 DOI: 10.1111/Brv.12493  0.751
2018 Williams AM, Friso G, van Wijk KJ, Sloan DB. Extreme variation in rates of evolution in the plastid Clp protease complex. The Plant Journal : For Cell and Molecular Biology. PMID 30570818 DOI: 10.1111/Tpj.14208  0.855
2018 Štorchová H, Stone JD, Sloan DB, Abeyawardana OAJ, Müller K, Walterová J, Pažoutová M. Homologous recombination changes the context of Cytochrome b transcription in the mitochondrial genome of Silene vulgaris KRA. Bmc Genomics. 19: 874. PMID 30514207 DOI: 10.1186/S12864-018-5254-0  0.553
2018 Simmons MP, Sloan DB, Springer MS, Gatesy J. Gene-wise resampling outperforms site-wise resampling in phylogenetic coalescence analyses. Molecular Phylogenetics and Evolution. PMID 30391518 DOI: 10.1016/J.Ympev.2018.10.001  0.371
2018 Wu Z, Sloan DB. Recombination and intraspecific polymorphism for the presence and absence of entire chromosomes in mitochondrial genomes. Heredity. PMID 30356223 DOI: 10.1038/S41437-018-0153-3  0.629
2018 Sloan DB, Warren JM, Williams AM, Wu Z, Abdel-Ghany SE, Chicco AJ, Havird JC. Cytonuclear integration and co-evolution. Nature Reviews. Genetics. PMID 30018367 DOI: 10.1038/S41576-018-0035-9  0.836
2018 Sloan DB, Broz AK, Sharbrough J, Wu Z. Detecting Rare Mutations and DNA Damage with Sequencing-Based Methods. Trends in Biotechnology. PMID 29550161 DOI: 10.1016/J.Tibtech.2018.02.009  0.76
2018 Sloan DB, Wu Z, Sharbrough J. Correction of persistent errors in Arabidopsis reference mitochondrial genomes. The Plant Cell. PMID 29519893 DOI: 10.1105/Tpc.18.00024  0.823
2017 Sharbrough J, Conover JL, Tate JA, Wendel JF, Sloan DB. Cytonuclear responses to genome doubling. American Journal of Botany. 104: 1277-1280. PMID 29885242 DOI: 10.3732/Ajb.1700293  0.76
2017 Sloan DB. Nuclear and mitochondrial RNA editing systems have opposite effects on protein diversity. Biology Letters. 13. PMID 28855414 DOI: 10.1098/Rsbl.2017.0314  0.459
2017 Sharbrough J, Havird JC, Noe GR, Warren JM, Sloan DB. The Mitonuclear Dimension of Neanderthal and Denisovan Ancestry in Modern Human Genomes. Genome Biology and Evolution. 9: 1567-1581. PMID 28854627 DOI: 10.1093/Gbe/Evx114  0.846
2017 Wu Z, Sloan DB, Brown CW, Rosenblueth M, Palmer JD, Ong HC. Mitochondrial retroprocessing promoted functional transfers of rpl5 to the nucleus in grasses. Molecular Biology and Evolution. PMID 28541477 DOI: 10.1093/Molbev/Msx170  0.624
2017 Stone JD, Koloušková P, Sloan DB, Štorchová H. Non-coding RNA may be associated with cytoplasmic male sterility in Silene vulgaris. Journal of Experimental Botany. PMID 28369520 DOI: 10.1093/Jxb/Erx057  0.462
2017 Havird JC, Trapp P, Miller C, Bazos I, Sloan DB. Causes and consequences of rapidly evolving mtDNA in a plant lineage. Genome Biology and Evolution. PMID 28164243 DOI: 10.1093/Gbe/Evx010  0.755
2016 Sloan DB, Havird JC, Sharbrough J. The On-Again, Off-Again Relationship between Mitochondrial Genomes and Species Boundaries. Molecular Ecology. PMID 27997046 DOI: 10.1111/Mec.13959  0.856
2016 Rockenbach K, Havird JC, Monroe JG, Triant DA, Taylor DR, Sloan DB. Phylogenetic and Population Genetic Evidence for Positive Selection in Rapidly Evolving Plastid-Nuclear Enzyme Complexes. Genetics. PMID 27707788 DOI: 10.1534/Genetics.116.188268  0.854
2016 Havird JC, Sloan DB. The roles of mutation, selection, and expression in determining relative rates of evolution in mitochondrial vs. nuclear genomes. Molecular Biology and Evolution. PMID 27563053 DOI: 10.1093/Molbev/Msw185  0.793
2016 Simmons MP, Sloan DB, Gatesy J. The effects of subsampling gene trees on coalescent methods applied to ancient divergences. Molecular Phylogenetics and Evolution. PMID 26768112 DOI: 10.1016/J.Ympev.2015.12.013  0.385
2016 Sloan DB, Wu Z. Molecular Evolution: The Perplexing Diversity of Mitochondrial RNA Editing Systems. Current Biology : Cb. 26: R22-4. PMID 26766226 DOI: 10.1016/J.Cub.2015.11.009  0.61
2016 Warren JM, Simmons MP, Wu Z, Sloan DB. Linear plasmids and the rate of sequence evolution in plant mitochondrial genomes. Genome Biology and Evolution. PMID 26759362 DOI: 10.1093/Gbe/Evw003  0.87
2015 Havird JC, Fitzpatrick SW, Kronenberger J, Funk WC, Angeloni LM, Sloan DB. Sex, Mitochondria, and Genetic Rescue. Trends in Ecology & Evolution. PMID 26712562 DOI: 10.1016/J.Tree.2015.11.012  0.667
2015 Moran NA, Sloan DB. The Hologenome Concept: Helpful or Hollow? Plos Biology. 13: e1002311. PMID 26636661 DOI: 10.1371/Journal.Pbio.1002311  0.516
2015 Wu Z, Stone JD, Štorchová H, Sloan DB. High transcript abundance, RNA editing, and small RNAs in intergenic regions within the massive mitochondrial genome of the angiosperm Silene noctiflora. Bmc Genomics. 16: 938. PMID 26573088 DOI: 10.1186/S12864-015-2155-3  0.64
2015 Havird JC, Whitehill NS, Snow CD, Sloan DB. Conservative and compensatory evolution in oxidative phosphorylation complexes of angiosperms with highly divergent rates of mitochondrial genome evolution. Evolution; International Journal of Organic Evolution. PMID 26514987 DOI: 10.1111/Evo.12808  0.77
2015 Sloan DB, Fields PD, Havird JC. Mitonuclear linkage disequilibrium in human populations. Proceedings. Biological Sciences / the Royal Society. 282. PMID 26378221 DOI: 10.1098/Rspb.2015.1704  0.831
2015 Wu Z, Cuthbert JM, Taylor DR, Sloan DB. The massive mitochondrial genome of the angiosperm Silene noctiflora is evolving by gain or loss of entire chromosomes. Proceedings of the National Academy of Sciences of the United States of America. PMID 25944937 DOI: 10.1073/Pnas.1421397112  0.764
2015 Sloan DB. Using plants to elucidate the mechanisms of cytonuclear co-evolution. The New Phytologist. 205: 1040-6. PMID 25729802 DOI: 10.1111/Nph.12835  0.6
2014 Barnard-Kubow KB, Sloan DB, Galloway LF. Correlation between sequence divergence and polymorphism reveals similar evolutionary mechanisms acting across multiple timescales in a rapidly evolving plastid genome. Bmc Evolutionary Biology. 14: 268. PMID 25539645 DOI: 10.1186/S12862-014-0268-Y  0.563
2014 Sloan DB, Wu Z. History of plastid DNA insertions reveals weak deletion and at mutation biases in angiosperm mitochondrial genomes. Genome Biology and Evolution. 6: 3210-21. PMID 25416619 DOI: 10.1093/Gbe/Evu253  0.7
2014 Sloan DB, Nakabachi A, Richards S, Qu J, Murali SC, Gibbs RA, Moran NA. Parallel histories of horizontal gene transfer facilitated extreme reduction of endosymbiont genomes in sap-feeding insects. Molecular Biology and Evolution. 31: 857-71. PMID 24398322 DOI: 10.1093/Molbev/Msu004  0.67
2014 Sloan DB, Triant DA, Forrester NJ, Bergner LM, Wu M, Taylor DR. A recurring syndrome of accelerated plastid genome evolution in the angiosperm tribe Sileneae (Caryophyllaceae). Molecular Phylogenetics and Evolution. 72: 82-9. PMID 24373909 DOI: 10.1016/J.Ympev.2013.12.004  0.845
2014 Sloan DB, Triant DA, Wu M, Taylor DR. Cytonuclear interactions and relaxed selection accelerate sequence evolution in organelle ribosomes. Molecular Biology and Evolution. 31: 673-82. PMID 24336923 DOI: 10.1093/Molbev/Mst259  0.865
2014 Mower JP, Sloan DB, Alverson AJ. Plant mitochondrial genome diversity: The genomics revolution Plant Genome Diversity. 1: 123-144. DOI: 10.1007/978-3-7091-1130-7_9  0.467
2014 Sloan DB, Taylor DR. Evolutionary rate variation in organelle genomes: The role of mutational processes Organelle Genetics: Evolution of Organelle Genomes and Gene Expression. 123-146. DOI: 10.1007/978-3-642-22380-8_6  0.605
2013 Sloan DB. One ring to rule them all? Genome sequencing provides new insights into the 'master circle' model of plant mitochondrial DNA structure. The New Phytologist. 200: 978-85. PMID 24712049 DOI: 10.1111/Nph.12395  0.567
2013 Sloan DB, Bennett GM, Engel P, Williams D, Ochman H. Disentangling associated genomes. Methods in Enzymology. 531: 445-64. PMID 24060132 DOI: 10.1016/B978-0-12-407863-5.00020-4  0.771
2013 Sloan DB, Moran NA. The evolution of genomic instability in the obligate endosymbionts of whiteflies. Genome Biology and Evolution. 5: 783-93. PMID 23542079 DOI: 10.1093/Gbe/Evt044  0.697
2013 Wilton PR, Sloan DB, Logsdon JM, Doddapaneni H, Neiman M. Characterization of transcriptomes from sexual and asexual lineages of a New Zealand snail (Potamopyrgus antipodarum). Molecular Ecology Resources. 13: 289-94. PMID 23280235 DOI: 10.1111/1755-0998.12051  0.631
2012 Sloan DB, Müller K, McCauley DE, Taylor DR, Storchová H. Intraspecific variation in mitochondrial genome sequence, structure, and gene content in Silene vulgaris, an angiosperm with pervasive cytoplasmic male sterility. The New Phytologist. 196: 1228-39. PMID 23009072 DOI: 10.1111/J.1469-8137.2012.04340.X  0.738
2012 Sloan DB, Moran NA. Endosymbiotic bacteria as a source of carotenoids in whiteflies. Biology Letters. 8: 986-9. PMID 22977066 DOI: 10.1098/Rsbl.2012.0664  0.647
2012 Raghavan R, Sloan DB, Ochman H. Antisense transcription is pervasive but rarely conserved in enteric bacteria. Mbio. 3. PMID 22872780 DOI: 10.1128/Mbio.00156-12  0.47
2012 Sloan DB, Moran NA. Genome reduction and co-evolution between the primary and secondary bacterial symbionts of psyllids. Molecular Biology and Evolution. 29: 3781-92. PMID 22821013 DOI: 10.1093/Molbev/Mss180  0.662
2012 Sloan DB, Alverson AJ, Chuckalovcak JP, Wu M, McCauley DE, Palmer JD, Taylor DR. Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates. Plos Biology. 10: e1001241. PMID 22272183 DOI: 10.1371/Journal.Pbio.1001241  0.734
2012 Sloan DB, Alverson AJ, Wu M, Palmer JD, Taylor DR. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence in the angiosperm genus Silene. Genome Biology and Evolution. 4: 294-306. PMID 22247429 DOI: 10.1093/Gbe/Evs006  0.741
2012 Sloan DB, Keller SR, Berardi AE, Sanderson BJ, Karpovich JF, Taylor DR. De novo transcriptome assembly and polymorphism detection in the flowering plant Silene vulgaris (Caryophyllaceae). Molecular Ecology Resources. 12: 333-43. PMID 21999839 DOI: 10.1111/J.1755-0998.2011.03079.X  0.83
2011 Alverson AJ, Zhuo S, Rice DW, Sloan DB, Palmer JD. The mitochondrial genome of the legume Vigna radiata and the analysis of recombination across short mitochondrial repeats. Plos One. 6: e16404. PMID 21283772 DOI: 10.1371/Journal.Pone.0016404  0.579
2010 Sloan DB, Alverson AJ, Storchová H, Palmer JD, Taylor DR. Extensive loss of translational genes in the structurally dynamic mitochondrial genome of the angiosperm Silene latifolia. Bmc Evolutionary Biology. 10: 274. PMID 20831793 DOI: 10.1186/1471-2148-10-274  0.753
2010 Sloan DB, MacQueen AH, Alverson AJ, Palmer JD, Taylor DR. Extensive loss of RNA editing sites in rapidly evolving Silene mitochondrial genomes: selection vs. retroprocessing as the driving force. Genetics. 185: 1369-80. PMID 20479143 DOI: 10.1534/Genetics.110.118000  0.649
2010 Sloan DB, Taylor DR. Testing for selection on synonymous sites in plant mitochondrial DNA: the role of codon bias and RNA editing. Journal of Molecular Evolution. 70: 479-91. PMID 20424833 DOI: 10.1007/S00239-010-9346-Y  0.705
2010 Sloan DB, Panjeti VG. Evolutionary feedbacks between reproductive mode and mutation rate exacerbate the paradox of sex. Evolution; International Journal of Organic Evolution. 64: 1129-35. PMID 19863589 DOI: 10.1111/J.1558-5646.2009.00869.X  0.332
2010 Sloan DB, Oxelman B, Rautenberg A, Taylor DR. Erratum to: Phylogenetic analysis of mitochondrial substitution rate variation in the angiosperm tribe Sileneae Bmc Evolutionary Biology. 10: 12. DOI: 10.1186/1471-2148-10-12  0.632
2009 Sloan DB, Oxelman B, Rautenberg A, Taylor DR. Phylogenetic analysis of mitochondrial substitution rate variation in the angiosperm tribe Sileneae. Bmc Evolutionary Biology. 9: 260. PMID 19878576 DOI: 10.1186/1471-2148-9-260  0.709
2008 Bret-Harte MS, Mack MC, Goldsmith GR, Sloan DB, Demarco J, Shaver GR, Ray PM, Biesinger Z, Chapin FS. Plant functional types do not predict biomass responses to removal and fertilization in Alaskan tussock tundra. The Journal of Ecology. 96: 713-726. PMID 18784797 DOI: 10.1111/J.1365-2745.2008.01378.X  0.315
2008 Sloan DB, Barr CM, Olson MS, Keller SR, Taylor DR. Evolutionary rate variation at multiple levels of biological organization in plant mitochondrial DNA. Molecular Biology and Evolution. 25: 243-6. PMID 18056075 DOI: 10.1093/Molbev/Msm266  0.776
2007 Barr CM, Keller SR, Ingvarsson PK, Sloan DB, Taylor DR. Variation in mutation rate and polymorphism among mitochondrial genes of Silene vulgaris. Molecular Biology and Evolution. 24: 1783-91. PMID 17533174 DOI: 10.1093/Molbev/Msm106  0.79
2007 Antonovics J, Abbate JL, Baker CH, Daley D, Hood ME, Jenkins CE, Johnson LJ, Murray JJ, Panjeti V, Rudolf VH, Sloan D, Vondrasek J. Evolution by any other name: antibiotic resistance and avoidance of the E-word. Plos Biology. 5: e30. PMID 17298172 DOI: 10.1371/Journal.Pbio.0050030  0.691
2006 McCormick MK, Whigham DF, Sloan D, O'Malley K, Hodkinson B. Orchid-fungus fidelity: a marriage meant to last? Ecology. 87: 903-11. PMID 16676534 DOI: 10.1890/0012-9658(2006)87[903:Ofammt]2.0.Co;2  0.345
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