Peter M. Huggins, Ph.D.
Affiliations: | 2008 | University of California, Berkeley, Berkeley, CA, United States |
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"Peter Huggins"Parents
Sign in to add mentor| Lior Pachter | grad student | 2008 | UC Berkeley | |
| (Polytopes in computational biology.) | ||||
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Publications
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| Papasaikas P, Rao A, Huggins P, et al. (2015) Reconstruction of composite regulator-target splicing networks from high-throughput transcriptome data. Bmc Genomics. 16: S7 |
| Haws DC, Huggins P, O'Neill EM, et al. (2012) A support vector machine based test for incongruence between sets of trees in tree space. Bmc Bioinformatics. 13: 210 |
| Huggins P, Zhong S, Shiff I, et al. (2011) DECOD: fast and accurate discriminative DNA motif finding. Bioinformatics (Oxford, England). 27: 2361-7 |
| Huggins PM, Li W, Haws D, et al. (2011) Bayes estimators for phylogenetic reconstruction. Systematic Biology. 60: 528-40 |
| Malaspinas AS, Eriksson N, Huggins P. (2011) Parametric analysis of alignment and phylogenetic uncertainty. Bulletin of Mathematical Biology. 73: 795-810 |
| Arnaoudova E, Haws DC, Huggins P, et al. (2010) Statistical phylogenetic tree analysis using differences of means. Frontiers in Neuroscience. 4 |
| Eickmeyer K, Huggins P, Pachter L, et al. (2008) On the optimality of the neighbor-joining algorithm. Algorithms For Molecular Biology : Amb. 3: 5 |
| Huggins P, Pachter L, Sturmfels B. (2007) Toward the human genotope. Bulletin of Mathematical Biology. 69: 2723-35 |
| Dewey CN, Huggins PM, Woods K, et al. (2006) Parametric alignment of Drosophila genomes. Plos Computational Biology. 2: e73 |
| De Loera JA, Haws D, Hemmecke R, et al. (2004) Short rational functions for toric algebra and applications Journal of Symbolic Computation. 38: 959-973 |