Michael Spencer Waterman

Mathematics University of Southern California, Los Angeles, CA, United States 
Computational Biology, Bioinformatics, Probability and Statistics, Combinatorics
"Michael Spencer Waterman"



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John Rankin Kinney grad student 1969 Michigan State
 (Some Ergodic Properties of Multi-Dimensional F-Expansions.)


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Pavel A. Pevzner grad student (Neurotree)
Fengzhu Sun grad student USC (Computational Biology Tree)
Mengxiang Tang grad student 2000 USC
Anton Valouev grad student 2006 USC
John P. McCrow grad student 2008 USC
Michael R. Mehan grad student 2009 USC
Christophe Lefevre post-doc (Computational Biology Tree)
Tandy Jo Warnow post-doc 1991-1992 USC (Computer Science Tree)
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Berger B, Waterman MS, Yu YW. (2021) Levenshtein Distance, Sequence Comparison and Biological Database Search. Ieee Transactions On Information Theory. 67: 3287-3294
Zielezinski A, Girgis HZ, Bernard G, et al. (2019) Benchmarking of alignment-free sequence comparison methods. Genome Biology. 20: 144
Chen S, Chen Y, Sun F, et al. (2019) A new statistic for efficient detection of repetitive sequences. Bioinformatics (Oxford, England)
Bai X, Tang K, Ren J, et al. (2017) Optimal choice of word length when comparing two Markov sequences using a χ (2)-statistic. Bmc Genomics. 18: 732
Lu YY, Tang K, Ren J, et al. (2017) CAFE: aCcelerated Alignment-FrEe sequence analysis. Nucleic Acids Research
Liu CC, Tseng YT, Li W, et al. (2014) DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections. Nucleic Acids Research. 42: W137-46
Song K, Ren J, Reinert G, et al. (2014) New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing. Briefings in Bioinformatics. 15: 343-53
Behnam E, Waterman MS, Smith AD. (2013) A geometric interpretation for local alignment-free sequence comparison. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 471-85
Zhai Z, Reinert G, Song K, et al. (2012) Normal and compound poisson approximations for pattern occurrences in NGS reads. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 19: 839-54
Liu X, Wan L, Li J, et al. (2011) New powerful statistics for alignment-free sequence comparison under a pattern transfer model. Journal of Theoretical Biology. 284: 106-16
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