Michael Spencer Waterman - Publications

Affiliations: 
Mathematics University of Southern California, Los Angeles, CA, United States 
Area:
Computational Biology, Bioinformatics, Probability and Statistics, Combinatorics
Website:
https://dornsife.usc.edu/cf/faculty-and-staff/faculty.cfm?pid=1003812

113 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Berger B, Waterman MS, Yu YW. Levenshtein Distance, Sequence Comparison and Biological Database Search. Ieee Transactions On Information Theory. 67: 3287-3294. PMID 34257466 DOI: 10.1109/tit.2020.2996543  0.304
2019 Zielezinski A, Girgis HZ, Bernard G, Leimeister CA, Tang K, Dencker T, Lau AK, Röhling S, Choi JJ, Waterman MS, Comin M, Kim SH, Vinga S, Almeida JS, Chan CX, et al. Benchmarking of alignment-free sequence comparison methods. Genome Biology. 20: 144. PMID 31345254 DOI: 10.1186/S13059-019-1755-7  0.595
2019 Chen S, Chen Y, Sun F, Waterman MS, Zhang X. A new statistic for efficient detection of repetitive sequences. Bioinformatics (Oxford, England). PMID 30993316 DOI: 10.1093/Bioinformatics/Btz262  0.613
2017 Bai X, Tang K, Ren J, Waterman M, Sun F. Optimal choice of word length when comparing two Markov sequences using a χ (2)-statistic. Bmc Genomics. 18: 732. PMID 28984181 DOI: 10.1186/S12864-017-4020-Z  0.621
2017 Lu YY, Tang K, Ren J, Fuhrman JA, Waterman MS, Sun F. CAFE: aCcelerated Alignment-FrEe sequence analysis. Nucleic Acids Research. PMID 28472388 DOI: 10.1093/Nar/Gkx351  0.612
2014 Liu CC, Tseng YT, Li W, Wu CY, Mayzus I, Rzhetsky A, Sun F, Waterman M, Chen JJ, Chaudhary PM, Loscalzo J, Crandall E, Zhou XJ. DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections. Nucleic Acids Research. 42: W137-46. PMID 24895436 DOI: 10.1093/Nar/Gku412  0.523
2014 Song K, Ren J, Reinert G, Deng M, Waterman MS, Sun F. New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing. Briefings in Bioinformatics. 15: 343-53. PMID 24064230 DOI: 10.1093/Bib/Bbt067  0.636
2013 Behnam E, Waterman MS, Smith AD. A geometric interpretation for local alignment-free sequence comparison. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 471-85. PMID 23829649 DOI: 10.1089/Cmb.2012.0280  0.42
2012 Zhai Z, Reinert G, Song K, Waterman MS, Luan Y, Sun F. Normal and compound poisson approximations for pattern occurrences in NGS reads. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 19: 839-54. PMID 22697250 DOI: 10.1089/Cmb.2012.0029  0.651
2011 Liu X, Wan L, Li J, Reinert G, Waterman MS, Sun F. New powerful statistics for alignment-free sequence comparison under a pattern transfer model. Journal of Theoretical Biology. 284: 106-16. PMID 21723298 DOI: 10.1016/J.Jtbi.2011.06.020  0.597
2011 Meng L, Sun F, Zhang X, Waterman MS. Sequence alignment as hypothesis testing. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 677-91. PMID 21554016 DOI: 10.1089/Cmb.2010.0328  0.601
2010 Schwartz DC, Waterman MS. New Generations: Sequencing Machines and Their Computational Challenges. Journal of Computer Science and Technology. 25: 3-9. PMID 22121326 DOI: 10.1007/S11390-010-9300-X  0.353
2010 Wan L, Reinert G, Sun F, Waterman MS. Alignment-free sequence comparison (II): theoretical power of comparison statistics. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 1467-90. PMID 20973742 DOI: 10.1089/Cmb.2010.0056  0.584
2010 Teague B, Waterman MS, Goldstein S, Potamousis K, Zhou S, Reslewic S, Sarkar D, Valouev A, Churas C, Kidd JM, Kohn S, Runnheim R, Lamers C, Forrest D, Newton MA, et al. High-resolution human genome structure by single-molecule analysis. Proceedings of the National Academy of Sciences of the United States of America. 107: 10848-53. PMID 20534489 DOI: 10.1073/Pnas.0914638107  0.754
2010 Zhai Z, Ku SY, Luan Y, Reinert G, Waterman MS, Sun F. The power of detecting enriched patterns: an HMM approach. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 581-92. PMID 20426691 DOI: 10.1089/Cmb.2009.0218  0.593
2009 Reinert G, Chew D, Sun F, Waterman MS. Alignment-free sequence comparison (I): statistics and power. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1615-34. PMID 20001252 DOI: 10.1089/Cmb.2009.0198  0.594
2009 Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, ... ... Waterman M, et al. The B73 maize genome: complexity, diversity, and dynamics. Science (New York, N.Y.). 326: 1112-5. PMID 19965430 DOI: 10.1126/Science.1178534  0.367
2009 Zhou S, Wei F, Nguyen J, Bechner M, Potamousis K, Goldstein S, Pape L, Mehan MR, Churas C, Pasternak S, Forrest DK, Wise R, Ware D, Wing RA, Waterman MS, et al. A single molecule scaffold for the maize genome. Plos Genetics. 5: e1000711. PMID 19936062 DOI: 10.1371/Journal.Pgen.1000711  0.456
2009 Mehan MR, Nunez-Iglesias J, Kalakrishnan M, Waterman MS, Zhou XJ. An integrative network approach to map the transcriptome to the phenome. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1023-34. PMID 19630539 DOI: 10.1089/Cmb.2009.0037  0.349
2009 Kim JH, Kim WC, Waterman MS, Park S, Li LM. HAPLOWSER: a whole-genome haplotype browser for personal genome and metagenome. Bioinformatics (Oxford, England). 25: 2430-1. PMID 19561337 DOI: 10.1093/Bioinformatics/Btp399  0.376
2009 Zhang MQ, Waterman MS, Zhang X. The Seventh Asia Pacific Bioinformatics Conference (APBC2009). Bmc Bioinformatics. 10: S1. PMID 19208108 DOI: 10.1186/1471-2105-10-S1-S1  0.314
2007 Kim JH, Waterman MS, Li LM. Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi. Genome Research. 17: 1101-10. PMID 17567986 DOI: 10.1101/Gr.5894107  0.438
2007 Li H, Valouev A, Schwartz DC, Waterman MS, Li LM. A quantile method for sizing optical maps. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 255-66. PMID 17563310 DOI: 10.1089/Cmb.2006.0006  0.752
2007 Reinert G, Waterman MS. On the length of the longest exact position match in a random sequence. Ieee/Acm Transactions On Computational Biology and Bioinformatics. 4: 153-6. PMID 17277422 DOI: 10.1109/Tcbb.2007.1023  0.426
2007 Kim JH, Waterman MS, Li LM. Accuracy assessment of diploid consensus sequences. Ieee/Acm Transactions On Computational Biology and Bioinformatics. 4: 88-97. PMID 17277416 DOI: 10.1109/Tcbb.2007.1007  0.401
2006 Valouev A, Schwartz DC, Zhou S, Waterman MS. An algorithm for assembly of ordered restriction maps from single DNA molecules. Proceedings of the National Academy of Sciences of the United States of America. 103: 15770-5. PMID 17043225 DOI: 10.1073/Pnas.0604040103  0.774
2006 Valouev A, Li L, Liu YC, Schwartz DC, Yang Y, Zhang Y, Waterman MS. Alignment of optical maps. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 442-62. PMID 16597251 DOI: 10.1089/Cmb.2006.13.442  0.748
2006 Valouev A, Zhang Y, Schwartz DC, Waterman MS. Refinement of optical map assemblies. Bioinformatics (Oxford, England). 22: 1217-24. PMID 16500933 DOI: 10.1093/Bioinformatics/Btl063  0.773
2005 Zhang Y, Waterman MS. An Eulerian path approach to local multiple alignment for DNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 102: 1285-90. PMID 15668398 DOI: 10.1073/Pnas.0409240102  0.436
2005 Zhang K, Qin Z, Chen T, Liu JS, Waterman MS, Sun F. HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms. Bioinformatics (Oxford, England). 21: 131-4. PMID 15333454 DOI: 10.1093/Bioinformatics/Bth482  0.548
2004 Li LM, Kim JH, Waterman MS. Haplotype reconstruction from SNP alignment. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 11: 505-16. PMID 15285905 DOI: 10.1089/1066527041410454  0.35
2004 Zhang K, Qin ZS, Liu JS, Chen T, Waterman MS, Sun F. Haplotype block partitioning and tag SNP selection using genotype data and their applications to association studies. Genome Research. 14: 908-16. PMID 15078859 DOI: 10.1101/Gr.1837404  0.554
2004 Istrail S, Sutton GG, Florea L, Halpern AL, Mobarry CM, Lippert R, Walenz B, Shatkay H, Dew I, Miller JR, Flanigan MJ, Edwards NJ, Bolanos R, Fasulo D, Halldorsson BV, ... ... Waterman MS, et al. Whole-genome shotgun assembly and comparison of human genome assemblies. Proceedings of the National Academy of Sciences of the United States of America. 101: 1916-21. PMID 14769938 DOI: 10.1073/Pnas.0307971100  0.418
2003 Zhang Y, Waterman MS. DNA sequence assembly and multiple sequence alignment by an Eulerian path approach. Cold Spring Harbor Symposia On Quantitative Biology. 68: 205-212. PMID 15338619 DOI: 10.1101/Sqb.2003.68.205  0.422
2003 Zhang Y, Waterman MS. An Eulerian path approach to global multiple alignment for DNA sequences. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 10: 803-19. PMID 14980012 DOI: 10.1089/106652703322756096  0.442
2003 Li X, Waterman MS. Estimating the repeat structure and length of DNA sequences using L-tuples. Genome Research. 13: 1916-22. PMID 12902383 DOI: 10.1101/Gr.1251803  0.389
2003 Zhang K, Sun F, Waterman MS, Chen T. Haplotype block partition with limited resources and applications to human chromosome 21 haplotype data. American Journal of Human Genetics. 73: 63-73. PMID 12802783 DOI: 10.1086/376437  0.586
2002 Lippert RA, Huang H, Waterman MS. Distributional regimes for the number of k-word matches between two random sequences. Proceedings of the National Academy of Sciences of the United States of America. 99: 13980-9. PMID 12374863 DOI: 10.1073/Pnas.202468099  0.359
2002 Zhang K, Deng M, Chen T, Waterman MS, Sun F. A dynamic programming algorithm for haplotype block partitioning. Proceedings of the National Academy of Sciences of the United States of America. 99: 7335-9. PMID 12032283 DOI: 10.1073/Pnas.102186799  0.547
2002 Tang M, Waterman M, Yooseph S. Zinc finger gene clusters and tandem gene duplication. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 9: 429-46. PMID 12015891 DOI: 10.1089/10665270252935557  0.725
2001 Pevzner PA, Tang H, Waterman MS. An Eulerian path approach to DNA fragment assembly. Proceedings of the National Academy of Sciences of the United States of America. 98: 9748-53. PMID 11504945 DOI: 10.1073/Pnas.171285098  0.579
2001 Tang M, Waterman MS. Local matching of random restriction maps Journal of Applied Probability. 38: 335-356. DOI: 10.1239/Jap/996986748  0.756
2000 Reinert G, Schbath S, Waterman MS. Probabilistic and Statistical Properties of Words: An Overview Journal of Computational Biology. 7: 1-46. PMID 10890386 DOI: 10.1089/10665270050081360  0.393
1998 Lee JK, Dancík V, Waterman MS. Estimation for restriction sites observed by optical mapping using reversible-jump Markov Chain Monte Carlo. Journal of Computational Biology. 5: 505-515. PMID 9773346 DOI: 10.1089/Cmb.1998.5.505  0.374
1998 Waterman MS. Introduction to Computational Biology: Maps, Sequences and Genomes. Biometrics. 54: 398. DOI: 10.2307/2534039  0.438
1997 Sun F, Benson G, Arnheim N, Waterman M. Pooling strategies for establishing physical genome maps using FISH Journal of Computational Biology. 4: 467-486. PMID 9385540 DOI: 10.1089/Cmb.1997.4.467  0.552
1997 Sun F, Waterman MS. Whole Genome Amplification And Branching Processes Advances in Applied Probability. 29: 629-668. DOI: 10.2307/1428080  0.629
1997 Dancik V, Waterman MS. Simple Maximum Likelihood Methods for the Optical Mapping Problem Genome Informatics. 8: 1-8. DOI: 10.11234/Gi1990.8.1  0.347
1997 Waterman MS, Istrail S, Pevzner PA. Preface: Special RECOMB'97 Issues Journal of Computational Biology. 4: 215-215. DOI: 10.1089/Cmb.1997.4.215  0.46
1996 Arratia R, Martin D, Reinert G, Waterman MS. Poisson Process Approximation for Sequence Repeats, and Sequencing by Hybridization Journal of Computational Biology. 3: 425-463. PMID 8891959 DOI: 10.1089/Cmb.1996.3.425  0.39
1996 Sun F, Galas D, Waterman MS. A Mathematical Analysis ofin VitroMolecular Selection – Amplification Journal of Molecular Biology. 258: 650-660. PMID 8636999 DOI: 10.1006/Jmbi.1996.0276  0.532
1996 Steel M, Goldstein L, Waterman MS. A Central Limit Theorem For The Parsimony Length Of Trees Advances in Applied Probability. 28: 1051-1071. DOI: 10.2307/1428164  0.314
1996 Vingron M, Waterman MS. Alignment networks and electrical networks Discrete Applied Mathematics. 71: 297-309. DOI: 10.1016/S0166-218X(96)00070-4  0.3
1995 Port E, Sun F, Martin D, Waterman MS. Genomic mapping by end-characterized random clones: a mathematical analysis. Genomics. 26: 84-100. PMID 7782090 DOI: 10.1016/0888-7543(95)80086-2  0.644
1995 Sun F, Arnheim N, Waterman MS. Whole genome amplification of single cells: Mathematical analysis of PEP and tagged PCR Nucleic Acids Research. 23: 3034-3040. PMID 7659528 DOI: 10.1093/Nar/23.15.3034  0.575
1995 Idury RM, Waterman MS. A new algorithm for DNA sequence assembly. Journal of Computational Biology. 2: 291-306. PMID 7497130 DOI: 10.1089/Cmb.1995.2.291  0.422
1995 Pevzner PA, Waterman MS. Multiple filtration and approximate pattern matching Algorithmica. 13: 135-154. DOI: 10.1007/Bf01188584  0.551
1994 Goldstein L, Waterman MS. Approximations to profile score distributions. Journal of Computational Biology. 1: 93-104. PMID 8790456 DOI: 10.1089/Cmb.1994.1.93  0.319
1994 Vingron M, Waterman MS. Sequence alignment and penalty choice. Review of concepts, case studies and implications. Journal of Molecular Biology. 235: 1-12. PMID 8289235 DOI: 10.1016/S0022-2836(05)80006-3  0.387
1994 Waterman MS, Vingron M. Rapid and accurate estimates of statistical significance for sequence data base searches. Proceedings of the National Academy of Sciences of the United States of America. 91: 4625-4628. PMID 8197109 DOI: 10.1073/Pnas.91.11.4625  0.404
1994 Benson G, Waterman MS. A method for fast database search for all k-nucleotide repeats Nucleic Acids Research. 22: 4828-4836. PMID 7984436 DOI: 10.1093/Nar/22.22.4828  0.36
1994 Waterman M. Estimating statistical significance of sequence alignments Philosophical Transactions of the Royal Society B. 344: 383-390. PMID 7800708 DOI: 10.1098/Rstb.1994.0077  0.384
1994 Waterman MS, Vingron M. Sequence Comparison Significance and Poisson Approximation Statistical Science. 9: 367-381. DOI: 10.1214/Ss/1177010382  0.408
1994 Arratia R, Waterman MS. A Phase Transition for the Score in Matching Random Sequences Allowing Deletions Annals of Applied Probability. 4: 200-225. DOI: 10.1214/Aoap/1177005208  0.318
1993 Waterman MS, Haeseler Av. Designer algorithms for cryptogene searches New Zealand Journal of Botany. 31: 269-273. DOI: 10.1080/0028825X.1993.10419504  0.336
1993 Pevzner PA, Waterman MS. Generalized Sequence Alignment and Duality Advances in Applied Mathematics. 14: 139-171. DOI: 10.1006/Aama.1993.1008  0.565
1992 Arratia R, Lander ES, Tavaré S, Waterman MS. Genomic mapping by anchoring random clones: a mathematical analysis. Genomics. 11: 806-27. PMID 1783390 DOI: 10.1016/0888-7543(91)90004-X  0.613
1992 Goldstein L, Waterman MS. Poisson, compound Poisson and process approximations for testing statistical significance in sequence comparisons. Bulletin of Mathematical Biology. 54: 785-812. PMID 1638260 DOI: 10.1007/Bf02459930  0.432
1992 Waterman MS, Eggert M, Lander E. Parametric sequence comparisons. Proceedings of the National Academy of Sciences of the United States of America. 89: 6090-6093. PMID 1631095 DOI: 10.1073/Pnas.89.13.6090  0.347
1992 von Haeseler A, Blum B, Simpson L, Sturm N, Waterman MS. Computer methods for locating kinetoplastid cryptogenes. Nucleic Acids Research. 20: 2717-24. PMID 1614859 DOI: 10.1093/Nar/20.11.2717  0.388
1992 Huang X, Waterman MS. Dynamic programming algorithms for restriction map comparison. Bioinformatics. 8: 511-520. PMID 1422885 DOI: 10.1093/Bioinformatics/8.5.511  0.366
1992 Churchill GA, Waterman MS. The accuracy of DNA sequences: estimating sequence quality. Genomics. 14: 89-98. PMID 1358801 DOI: 10.1016/S0888-7543(05)80288-5  0.424
1992 Schöniger M, Waterman MS. A local algorithm for dna sequence alignment with inversions Bulletin of Mathematical Biology. 54: 521-536. DOI: 10.1016/S0092-8240(05)80075-8  0.377
1991 Schmitt W, Waterman MS. Multiple solutions of DNA restriction mapping problems Advances in Applied Mathematics. 12: 412-427. DOI: 10.1016/0196-8858(91)90028-H  0.371
1990 Churchill GA, Daniels DL, Waterman MS. The distribution of restriction enzyme sites in Escherichia coli. Nucleic Acids Research. 18: 589-97. PMID 2408016 DOI: 10.1093/Nar/18.3.589  0.373
1990 Waterman MS. Genomic sequence databases. Genomics. 6: 700-701. PMID 2341159 DOI: 10.1016/0888-7543(90)90508-R  0.393
1990 Waterman MS, Jones R. Consensus methods for DNA and protein sequence alignment. Methods in Enzymology. 183: 221-237. PMID 2314276 DOI: 10.1016/0076-6879(90)83016-3  0.418
1990 Tang B, Waterman MS. The expected fraction of clonable genomic DNA. Bulletin of Mathematical Biology. 52: 455-475. PMID 2198972 DOI: 10.1007/Bf02458581  0.385
1990 Branscomb E, Slezak T, Pae R, Galas D, Carrano AV, Waterman M. Optimizing restriction fragment fingerprinting methods for ordering large genomic libraries. Genomics. 8: 351-366. PMID 1979055 DOI: 10.1016/0888-7543(90)90293-4  0.394
1990 Arratia R, Gordon L, Waterman MS. The Erdos-Renyi Law in Distribution, for Coin Tossing and Sequence Matching Annals of Statistics. 18: 539-570. DOI: 10.1214/Aos/1176347615  0.354
1990 Griggs JR, Hanlon P, Odlyzko AM, Waterman MS. On the number of alignments ofk sequences Graphs and Combinatorics. 6: 133-146. DOI: 10.1007/Bf01787724  0.353
1989 Waterman MS. Mathematical Methods for DNA Sequences Biometrics. 46: 882. DOI: 10.2307/2532117  0.352
1989 Arratia R, Waterman MS. The Erdos-Renyi Strong Law For Pattern Matching With A Given Proportion Of Mismatches Annals of Probability. 17: 1152-1169. DOI: 10.1214/Aop/1176991262  0.35
1988 Lander ES, Waterman MS. Genomic mapping by fingerprinting random clones: a mathematical analysis. Genomics. 2: 231-9. PMID 3294162 DOI: 10.1016/0888-7543(88)90007-9  0.372
1988 Waterman MS. [52] Computer analysis of nucleic acid sequences Methods in Enzymology. 164: 765-793. PMID 3071692 DOI: 10.1016/S0076-6879(88)64083-3  0.401
1987 Waterman MS, Gordon L, Arratia R. Phase transitions in sequence matches and nucleic acid structure Proceedings of the National Academy of Sciences of the United States of America. 84: 1239-1243. PMID 3469666 DOI: 10.1073/Pnas.84.5.1239  0.322
1987 Waterman MS, Eggert M. A new algorithm for best subsequence alignments with application to tRNA-rRNA comparisons. Journal of Molecular Biology. 197: 723-728. PMID 2448477 DOI: 10.1016/0022-2836(87)90478-5  0.372
1987 Goldstein L, Waterman MS. Mapping DNA by stochastic relaxation Advances in Applied Mathematics. 8: 194-207. DOI: 10.1016/0196-8858(87)90013-3  0.359
1987 Waterman MS, Raymond R. The match game: New stratigraphic correlation algorithms Mathematical Geosciences. 19: 109-127. DOI: 10.1007/Bf00898191  0.318
1986 Waterman MS. Multiple sequence alignment by consensus. Nucleic Acids Research. 14: 9095-9102. PMID 3786145 DOI: 10.1093/Nar/14.22.9095  0.417
1986 Waterman MS, Griggs JR. Interval graphs and maps of DNA Bulletin of Mathematical Biology. 48: 189-195. PMID 3719155 DOI: 10.1007/bf02460022  0.352
1986 Griggs JR, Hanlon PJ, Waterman MS. Sequence alignments with matched sections Siam Journal On Algebraic and Discrete Methods. 7: 604-608. DOI: 10.1137/0607067  0.378
1985 Galas DJ, Eggert M, Waterman MS. Rigorous Pattern-recognition Methods for DNA Sequences Analysis of Promoter Sequences from Escherichia coli Journal of Molecular Biology. 186: 117-128. PMID 3908689 DOI: 10.1016/0022-2836(85)90262-1  0.38
1985 Smith TF, Waterman MS, Burks C. The statistical distribution of nucleic acid similarities. Nucleic Acids Research. 13: 645-656. PMID 3871073 DOI: 10.1093/Nar/13.2.645  0.39
1985 Breen S, Waterman MS, Zhang N. Renewal theory for several patterns Journal of Applied Probability. 22: 228-234. DOI: 10.2307/3213763  0.324
1985 Arratia R, Waterman MS. Critical Phenomena in Sequence Matching Annals of Probability. 13: 1236-1249. DOI: 10.1214/Aop/1176992808  0.381
1984 Waterman MS. Efficient sequence alignment algorithms. Journal of Theoretical Biology. 108: 333-337. PMID 6748696 DOI: 10.1016/S0022-5193(84)80037-5  0.316
1984 Lipman DJ, Wilbur WJ, Smith TF, Waterman MS. On the statistical significance of nucleic add similarities Nucleic Acids Research. 12: 215-226. PMID 6694902 DOI: 10.1093/Nar/12.1Part1.215  0.348
1984 Waterman MS, Smith TF, Katcher HL. Algorithms for restriction map comparisons. Nucleic Acids Research. 12: 237-242. PMID 6320090 DOI: 10.1093/Nar/12.1Part1.237  0.37
1984 Waterman MS, Perlwitz MD. Line geometries for sequence comparisons Bulletin of Mathematical Biology. 46: 567-577. DOI: 10.1016/S0092-8240(84)80060-9  0.406
1984 Waterman MS, Arratia R, Galas DJ. Pattern recognition in several sequences: Consensus and alignment Bulletin of Mathematical Biology. 46: 515-527. DOI: 10.1016/S0092-8240(84)80056-7  0.36
1984 Waterman MS. General methods of sequence comparison Bulletin of Mathematical Biology. 46: 473-500. DOI: 10.1016/S0092-8240(84)80054-3  0.395
1983 Waterman MS. Sequence alignments in the neighborhood of the optimum with general application to dynamic programming. Proceedings of the National Academy of Sciences of the United States of America. 80: 3123-3124. PMID 16593315 DOI: 10.1073/Pnas.80.10.3123  0.379
1983 Smith TF, Waterman MS, Sadler JR. Statistical characterization of nucleic acid sequence functional domains Nucleic Acids Research. 11: 2205-2220. PMID 6835847 DOI: 10.1093/Nar/11.7.2205  0.338
1983 Sadler JR, Waterman MS, Smith TF. Regulatory pattern Identification in nucleic acid sequences Nucleic Acids Research. 11: 2221-2232. PMID 6340068 DOI: 10.1093/Nar/11.7.2221  0.404
1982 Lipman DJ, Smith TF, Beckman RJ, Waterman MS. Hierarchical analysis of influenza A hemagglutinin gene sequences Nucleic Acids Research. 10: 5375-5389. PMID 7145705 DOI: 10.1093/Nar/10.17.5375  0.374
1982 Smith TF, Waterman MS, Fitch WM. Comparative biosequence metrics Journal of Molecular Evolution. 18: 423. DOI: 10.1007/Bf01733210  0.385
1981 Smith TF, Waterman MS. Comparison of biosequences Advances in Applied Mathematics. 2: 482-489. DOI: 10.1016/0196-8858(81)90046-4  0.35
1980 Smith TF, Waterman MS. New Stratigraphic Correlation Techniques The Journal of Geology. 88: 451-457. DOI: 10.1086/628528  0.377
1980 Smith TF, Waterman MS. Protein constraints induced by multiframe encoding Mathematical Biosciences. 49: 17-26. DOI: 10.1016/0025-5564(80)90108-X  0.311
1979 Stein PR, Waterman MS. On some new sequences generalizing the Catalan and Motzkin numbers Discrete Mathematics. 26: 261-272. DOI: 10.1016/0012-365X(79)90033-5  0.363
1976 Waterman MS. On the approximation of invariant measures for continued fractions Rocky Mountain Journal of Mathematics. 6: 181-190. DOI: 10.1216/Rmj-1976-6-1-181  0.324
1976 Waterman MS, Smith TF, Beyer WA. Some Biological Sequence Metrics Advances in Mathematics. 20: 367-387. DOI: 10.1016/0001-8708(76)90202-4  0.399
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