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Peng Qiu, Ph.D. - Publications

Affiliations: 
2007 Electrical Engineering University of Maryland, College Park, College Park, MD 
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Wang X, Qiu P. A freight integer linear programming model under fog computing and its application in the optimization of vehicle networking deployment. Plos One. 15: e0239628. PMID 32970755 DOI: 10.1371/journal.pone.0239628  0.319
2020 Qiu P. Embracing the dropouts in single-cell RNA-seq analysis. Nature Communications. 11: 1169. PMID 32127540 DOI: 10.1038/S41467-020-14976-9  0.317
2020 Young KM, Xu C, Ahkee K, Mezencev R, Qiu P, Sulchek T. Correlating Mechanical and Gene Expression Data on the Single Cell Level to Investigate Metastasis Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.1150  0.306
2019 Guo T, Luna A, Rajapakse VN, Koh CC, Wu Z, Liu W, Sun Y, Gao H, Menden MP, Xu C, Calzone L, Martignetti L, Auwerx C, Buljan M, Banaei-Esfahani A, ... ... Qiu P, et al. Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines. Iscience. 21: 664-680. PMID 31733513 DOI: 10.1016/J.Isci.2019.10.059  0.36
2018 Bongiorno T, Gura J, Talwar P, Chambers D, Young KM, Arafat D, Wang G, Jackson-Holmes EL, Qiu P, McDevitt TC, Sulchek T. Biophysical subsets of embryonic stem cells display distinct phenotypic and morphological signatures. Plos One. 13: e0192631. PMID 29518080 DOI: 10.1371/Journal.Pone.0192631  0.301
2017 Qiu P. Toward deterministic and semiautomated SPADE analysis. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. PMID 28234411 DOI: 10.1002/Cyto.A.23068  0.317
2016 Spainhour JC, Qiu P. Identification of gene-drug interactions that impact patient survival in TCGA. Bmc Bioinformatics. 17: 409. PMID 27716027 DOI: 10.1186/S12859-016-1255-7  0.316
2016 Anchang B, Hart TD, Bendall SC, Qiu P, Bjornson Z, Linderman M, Nolan GP, Plevritis SK. Visualization and cellular hierarchy inference of single-cell data using SPADE. Nature Protocols. 11: 1264-1279. PMID 27310265 DOI: 10.1038/Nprot.2016.066  0.35
2015 Yu Y, Qiu P, Zhu Y, Li J, Wu M, Zhang B, Yao K. A novel phenotype-genotype correlation with an Arg555Trp mutation of TGFBI gene in Thiel-Behnke corneal dystrophy in a Chinese pedigree. Bmc Ophthalmology. 15: 131. PMID 26464103 DOI: 10.1186/s12886-015-0121-0  0.406
2015 Aghaeepour N, Chattopadhyay P, Chikina M, Dhaene T, Van Gassen S, Kursa M, Lambrecht BN, Malek M, Qian Y, Qiu P, Saeys Y, Stanton R, Tong D, Vens C, Walkowiak S, et al. A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. PMID 26447924 DOI: 10.1002/Cyto.A.22732  0.324
2015 Xu Y, Qiu P, Roysam B. Unsupervised Discovery of Subspace Trends. Ieee Transactions On Pattern Analysis and Machine Intelligence. 37: 2131-45. PMID 26353189 DOI: 10.1109/Tpami.2015.2394475  0.304
2015 Kvistborg P, Gouttefangeas C, Aghaeepour N, Cazaly A, Chattopadhyay PK, Chan C, Eckl J, Finak G, Hadrup SR, Maecker HT, Maurer D, Mosmann T, Qiu P, Scheuermann RH, Welters MJ, et al. Thinking outside the gate: single-cell assessments in multiple dimensions. Immunity. 42: 591-2. PMID 25902473 DOI: 10.1016/J.Immuni.2015.04.006  0.323
2015 Qiu P. Computational prediction of manually gated rare cells in flow cytometry data. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 87: 594-602. PMID 25755118 DOI: 10.1002/Cyto.A.22654  0.33
2015 Han L, Qiu P, Zeng Z, Jorgensen JL, Mak DH, Burks JK, Schober W, McQueen TJ, Cortes J, Tanner SD, Roboz GJ, Kantarjian HM, Kornblau SM, Guzman ML, Andreeff M, et al. Single-cell mass cytometry reveals intracellular survival/proliferative signaling in FLT3-ITD-mutated AML stem/progenitor cells. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 87: 346-56. PMID 25598437 DOI: 10.1002/Cyto.A.22628  0.314
2014 Qiu P. Unfold High-Dimensional Clouds for Exhaustive Gating of Flow Cytometry Data. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 11: 1045-51. PMID 26357042 DOI: 10.1109/Tcbb.2014.2321403  0.345
2014 Mitra R, Müller P, Qiu P, Ji Y. Bayesian hierarchical models for protein networks in single-cell mass cytometry. Cancer Informatics. 13: 79-89. PMID 25574129 DOI: 10.4137/Cin.S13984  0.311
2014 Zeng Y, Yang D, Qiu P, Han Z, Zeng P, He Y, Guo Z, Xu L, Cui Y, Zhou Z, Zhang M, Hao J, Zhang L. Efficacy of Heparinoid PSS in Treating Cardiovascular Diseases and Beyond-A Review of 27 Years Clinical Experiences in China. Clinical and Applied Thrombosis/Hemostasis : Official Journal of the International Academy of Clinical and Applied Thrombosis/Hemostasis. PMID 25258421 DOI: 10.1177/1076029614551822  0.311
2014 Zhu Y, Qiu P, Ji Y. TCGA-assembler: open-source software for retrieving and processing TCGA data. Nature Methods. 11: 599-600. PMID 24874569 DOI: 10.1038/Nmeth.2956  0.312
2012 Linderman MD, Bjornson Z, Simonds EF, Qiu P, Bruggner RV, Sheode K, Meng TH, Plevritis SK, Nolan GP. CytoSPADE: high-performance analysis and visualization of high-dimensional cytometry data. Bioinformatics (Oxford, England). 28: 2400-1. PMID 22782546 DOI: 10.1093/Bioinformatics/Bts425  0.308
2012 Qiu P. Inferring phenotypic properties from single-cell characteristics. Plos One. 7: e37038. PMID 22662133 DOI: 10.1371/Journal.Pone.0037038  0.336
2011 Qiu P, Simonds EF, Bendall SC, Gibbs KD, Bruggner RV, Linderman MD, Sachs K, Nolan GP, Plevritis SK. Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE. Nature Biotechnology. 29: 886-91. PMID 21964415 DOI: 10.1038/Nbt.1991  0.341
2011 Bendall SC, Simonds EF, Qiu P, Amir el-AD, Krutzik PO, Finck R, Bruggner RV, Melamed R, Trejo A, Ornatsky OI, Balderas RS, Plevritis SK, Sachs K, Pe'er D, Tanner SD, et al. Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum. Science (New York, N.Y.). 332: 687-96. PMID 21551058 DOI: 10.1126/Science.1198704  0.331
2011 Qiu P, Gentles AJ, Plevritis SK. Discovering biological progression underlying microarray samples. Plos Computational Biology. 7: e1001123. PMID 21533210 DOI: 10.1371/Journal.Pcbi.1001123  0.349
2007 Qiu P, Wang ZJ, Liu KJ, Hu ZZ, Wu CH. Dependence network modeling for biomarker identification. Bioinformatics (Oxford, England). 23: 198-206. PMID 17077095 DOI: 10.1093/Bioinformatics/Btl553  0.339
2006 Qiu P, Wang ZJ, Liu KJ. Polynomial model approach for resynchronization analysis of cell-cycle gene expression data. Bioinformatics (Oxford, England). 22: 959-66. PMID 16434439 DOI: 10.1093/Bioinformatics/Btl017  0.374
2005 Qiu P, Wang ZJ, Liu KJ. Ensemble dependence model for classification and prediction of cancer and normal gene expression data. Bioinformatics (Oxford, England). 21: 3114-21. PMID 15879455 DOI: 10.1093/Bioinformatics/Bti483  0.357
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