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Lenwood S. Heath - Publications

Affiliations: 
Virginia Polytechnic Institute and State University, Blacksburg, VA, United States 
Area:
Computer Science, Mathematics
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52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Belal NA, Heath LS. A complete theoretical framework for inferring horizontal gene transfers using partial order sets. Plos One. 18: e0281824. PMID 36961781 DOI: 10.1371/journal.pone.0281824  0.776
2020 Arango-Argoty GA, Guron GKP, Garner E, Riquelme MV, Heath LS, Pruden A, Vikesland PJ, Zhang L. ARGminer: A web platform for crowdsourcing based curation of antibiotic resistance genes. Bioinformatics (Oxford, England). PMID 32058567 DOI: 10.1093/Bioinformatics/Btaa095  0.372
2019 Lee J, Heath LS, Grene R, Li S. Comparing time series transcriptome data between plants using a network module finding algorithm. Plant Methods. 15: 61. PMID 31164912 DOI: 10.1186/S13007-019-0440-X  0.339
2018 Yang Y, Robertson JA, Guo Z, Martinez J, Coghlan C, Heath LS. MCAT: Motif Combining and Association Tool. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 30418034 DOI: 10.1089/Cmb.2018.0113  0.314
2018 Arango-Argoty G, Garner E, Pruden A, Heath LS, Vikesland P, Zhang L. DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data. Microbiome. 6: 23. PMID 29391044 DOI: 10.1186/S40168-018-0401-Z  0.334
2017 Song Q, Grene R, Heath LS, Li S. Identification of regulatory modules in genome scale transcription regulatory networks. Bmc Systems Biology. 11: 140. PMID 29246163 DOI: 10.1186/S12918-017-0493-2  0.358
2017 Torkey H, Heath LS, ElHefnawi M. MicroTarget: MicroRNA target gene prediction approach with application to breast cancer. Journal of Bioinformatics and Computational Biology. 1750013. PMID 28552033 DOI: 10.1142/S0219720017500135  0.361
2017 Aghamirzaie D, Raja Velmurugan K, Wu S, Altarawy D, Heath LS, Grene R. Expresso: A database and web server for exploring the interaction of transcription factors and their target genes in Arabidopsis thaliana using ChIP-Seq peak data. F1000research. 6: 372. PMID 28529706 DOI: 10.12688/F1000Research.10041.1  0.368
2017 Altarawy D, Eid FE, Heath LS. PEAK: Integrating Curated and Noisy Prior Knowledge in Gene Regulatory Network Inference. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 28294630 DOI: 10.1089/Cmb.2016.0199  0.403
2016 Ni Y, Aghamirzaie D, Elmarakeby H, Collakova E, Li S, Grene R, Heath LS. A Machine Learning Approach to Predict Gene Regulatory Networks in Seed Development in Arabidopsis. Frontiers in Plant Science. 7: 1936. PMID 28066488 DOI: 10.3389/Fpls.2016.01936  0.366
2016 Badr E, ElHefnawi M, Heath LS. Computational Identification of Tissue-Specific Splicing Regulatory Elements in Human Genes from RNA-Seq Data. Plos One. 11: e0166978. PMID 27861625 DOI: 10.1371/Journal.Pone.0166978  0.309
2016 Arango-Argoty G, Singh G, Heath LS, Pruden A, Xiao W, Zhang L. MetaStorm: A Public Resource for Customizable Metagenomics Annotation. Plos One. 11: e0162442. PMID 27632579 DOI: 10.1371/Journal.Pone.0162442  0.338
2015 Schneider A, Aghamirzaie D, Elmarakeby H, Poudel AN, Koo AJ, Heath LS, Grene R, Collakova E. Potential targets of VIVIPAROUS1/ABI3-LIKE1 (VAL1) repression in developing Arabidopsis thaliana embryos. The Plant Journal : For Cell and Molecular Biology. PMID 26678037 DOI: 10.1111/Tpj.13106  0.315
2015 Badr E, Heath LS. CoSREM: a graph mining algorithm for the discovery of combinatorial splicing regulatory elements. Bmc Bioinformatics. 16: 285. PMID 26337677 DOI: 10.1186/S12859-015-0698-6  0.328
2014 Badr E, Heath LS. Identifying splicing regulatory elements with de Bruijn graphs. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 21: 880-97. PMID 25393830 DOI: 10.1089/Cmb.2014.0183  0.336
2013 Collakova E, Klumas C, Suren H, Myers E, Heath LS, Holliday JA, Grene R. Evidence for extensive heterotrophic metabolism, antioxidant action, and associated regulatory events during winter hardening in Sitka spruce. Bmc Plant Biology. 13: 72. PMID 23631437 DOI: 10.1186/1471-2229-13-72  0.352
2013 FERNANDEZ PL, HEATH LS, RAMAKRISHNAN N, TAN M, VERGARA JPC. MINING POSETS FROM LINEAR ORDERS Discrete Mathematics, Algorithms and Applications. 5: 1350030. DOI: 10.1142/S1793830913500304  0.302
2012 Yang K, Heath LS, Setubal JC. REGEN: Ancestral Genome Reconstruction for Bacteria. Genes. 3: 423-43. PMID 24704978 DOI: 10.3390/Genes3030423  0.338
2012 Grene R, Klumas C, Suren H, Yang K, Collakova E, Myers E, Heath LS, Holliday JA. Mining and visualization of microarray and metabolomic data reveal extensive cell wall remodeling during winter hardening in Sitka spruce (Picea sitchensis). Frontiers in Plant Science. 3: 241. PMID 23112803 DOI: 10.3389/Fpls.2012.00241  0.378
2012 Zhou L, Franck C, Yang K, Pilot G, Heath LS, Grene R. Mining for meaning: visualization approaches to deciphering Arabidopsis stress responses in roots and shoots. Omics : a Journal of Integrative Biology. 16: 208-28. PMID 22416883 DOI: 10.1089/Omi.2011.0111  0.435
2011 Pati A, Heath LS, Kyrpides NC, Ivanova N. ClaMS: A Classifier for Metagenomic Sequences. Standards in Genomic Sciences. 5: 248-53. PMID 22180827 DOI: 10.4056/Sigs.2075298  0.46
2011 Belal NA, Heath LS. A theoretical model for whole genome alignment. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 705-28. PMID 21210739 DOI: 10.1089/Cmb.2010.0101  0.754
2010 Vásquez-Robinet C, Watkinson JI, Sioson AA, Ramakrishnan N, Heath LS, Grene R. Differential expression of heat shock protein genes in preconditioning for photosynthetic acclimation in water-stressed loblolly pine. Plant Physiology and Biochemistry : Ppb / SociéTé FrançAise De Physiologie VéGéTale. 48: 256-64. PMID 20171112 DOI: 10.1016/J.Plaphy.2009.12.005  0.769
2010 Sundaravaradan N, Hossain KSMT, Sreedharan V, Slotta DJ, Vergara JPC, Heath LS, Ramakrishnan N. Extracting temporal signatures for comprehending systems biology models Proceedings of the Acm Sigkdd International Conference On Knowledge Discovery and Data Mining. 453-462. DOI: 10.1145/1835804.1835863  0.722
2010 Belal NA, Heath LS. Inferring horizontal gene transfer from posets Icctd 2010 - 2010 2nd International Conference On Computer Technology and Development, Proceedings. 32-36. DOI: 10.1109/ICCTD.2010.5646060  0.775
2009 Heath LS, Sioson AA. Multimodal networks: structure and operations. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 6: 321-32. PMID 19407355 DOI: 10.1109/Tcbb.2007.70243  0.758
2009 Heath LS, Sioson AA. Semantics of multimodal network models. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 6: 271-80. PMID 19407351 DOI: 10.1109/Tcbb.2007.70242  0.76
2008 Mane SP, Robinet CV, Ulanov A, Schafleitner R, Tincopa L, Gaudin A, Nomberto G, Alvarado C, Solis C, Bolivar LA, Blas R, Ortega O, Solis J, Panta A, Rivera C, ... ... Heath LS, et al. Molecular and physiological adaptation to prolonged drought stress in the leaves of two Andean potato genotypes. Functional Plant Biology : Fpb. 35: 669-688. PMID 32688822 DOI: 10.1071/Fp07293  0.541
2008 Watkinson JI, Hendricks L, Sioson AA, Heath LS, Bohnert HJ, Grene R. Tuber development phenotypes in adapted and acclimated, drought-stressed Solanum tuberosum ssp. andigena have distinct expression profiles of genes associated with carbon metabolism. Plant Physiology and Biochemistry : Ppb / SociéTé FrançAise De Physiologie VéGéTale. 46: 34-45. PMID 18061466 DOI: 10.1016/J.Plaphy.2007.10.020  0.784
2008 Pati A, Jin Y, Klage K, Helm RF, Heath LS, Ramakrishnan N. CMGSDB: integrating heterogeneous Caenorhabditis elegans data sources using compositional data mining. Nucleic Acids Research. 36: D69-76. PMID 17942411 DOI: 10.1093/Nar/Gkm804  0.555
2008 Mane SP, Robinet CV, Ulanov A, Schafleitner R, Tincopa L, Gaudin A, Nomberto G, Alvarado C, Solis C, Bolivar LA, Blas R, Ortega O, Solis J, Panta A, Rivera C, ... ... Heath LS, et al. Molecular and physiological adaptation to prolonged drought stress in the leaves of two Andean potato genotypes Functional Plant Biology. 35: 669-688. DOI: 10.1071/FP07293  0.482
2007 Mane SP, Vasquez-Robinet C, Sioson AA, Heath LS, Grene R. Early PLDalpha-mediated events in response to progressive drought stress in Arabidopsis: a transcriptome analysis. Journal of Experimental Botany. 58: 241-52. PMID 17261695 DOI: 10.1093/Jxb/Erl262  0.776
2007 Heath LS, Pati A. Predicting Markov chain order in genomic sequences Proceedings - 2007 Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2007. 159-164. DOI: 10.1109/BIBM.2007.24  0.418
2007 Heath LS, Pati A. Genomic signatures from DNA word graphs Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4463: 317-328.  0.428
2007 Heath LS, Pati A. Genomic signatures in de Bruijn chains Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4645: 216-227.  0.437
2006 Li P, Mane SP, Sioson AA, Robinet CV, Heath LS, Bohnert HJ, Grene R. Effects of chronic ozone exposure on gene expression in Arabidopsis thaliana ecotypes and in Thellungiella halophila. Plant, Cell & Environment. 29: 854-68. PMID 17087469 DOI: 10.1111/J.1365-3040.2005.01465.X  0.772
2006 Li P, Sioson A, Mane SP, Ulanov A, Grothaus G, Heath LS, Murali TM, Bohnert HJ, Grene R. Response diversity of Arabidopsis thaliana ecotypes in elevated [CO2] in the field. Plant Molecular Biology. 62: 593-609. PMID 16941220 DOI: 10.1007/S11103-006-9041-Y  0.78
2006 Pati A, Vasquez-Robinet C, Heath LS, Grene R, Murali TM. XcisClique: analysis of regulatory bicliques. Bmc Bioinformatics. 7: 218. PMID 16630346 DOI: 10.1186/1471-2105-7-218  0.584
2006 Sioson AA, Mane SP, Li P, Sha W, Heath LS, Bohnert HJ, Grene R. The statistics of identifying differentially expressed genes in Expresso and TM4: a comparison. Bmc Bioinformatics. 7: 215. PMID 16626497 DOI: 10.1186/1471-2105-7-215  0.774
2006 Watkinson JI, Hendricks L, Sioson AA, Vasquez-Robinet C, Stromberg V, Heath LS, Schuler M, Bohnert HJ, Bonierbale M, Grene R. Accessions of Solanum tuberosum ssp. andigena show differences in photosynthetic recovery after drought stress as reflected in gene expression profiles Plant Science. 171: 745-758. DOI: 10.1016/J.Plantsci.2006.07.010  0.79
2003 Watkinson JI, Sioson AA, Vasquez-Robinet C, Shukla M, Kumar D, Ellis M, Heath LS, Ramakrishnan N, Chevone B, Watson LT, van Zyl L, Egertsdotter U, Sederoff RR, Grene R. Photosynthetic acclimation is reflected in specific patterns of gene expression in drought-stressed loblolly pine. Plant Physiology. 133: 1702-16. PMID 14681533 DOI: 10.1104/Pp.103.026914  0.792
2003 Slotta DJ, Heath LS, Ramakrishnan N, Helm R, Potts M. Clustering mass spectrometry data using order statistics. Proteomics. 3: 1687-91. PMID 12973726 DOI: 10.1002/Pmic.200300517  0.719
2003 Sioson A, Watkinson JI, Vasquez-Robinet C, Ellis M, Shukla M, Kumar D, Ramakrishnan N, Heath LS, Grene R, Chevone BI, Kafadar K, Watson LT. Expresso and chips: Creating a next generation microarray experiment management system Proceedings - International Parallel and Distributed Processing Symposium, Ipdps 2003. DOI: 10.1109/IPDPS.2003.1213384  0.747
2002 Heath LS, Ramakrishnan N, Sederoff RR, Whetten RW, Chevone BI, Struble CA, Jouenne VY, Chen D, van Zyl L, Grene R. Studying the functional genomics of stress responses in loblolly pine with the Expresso microarray experiment management system. Comparative and Functional Genomics. 3: 226-43. PMID 18628855 DOI: 10.1002/Cfg.169  0.717
2002 Alscher RG, Erturk N, Heath LS. Role of superoxide dismutases (SODs) in controlling oxidative stress in plants. Journal of Experimental Botany. 53: 1331-41. PMID 11997379 DOI: 10.1093/Jexbot/53.372.1331  0.328
2001 Green EL, Heath LS, Struble CA. Constructing Homomorphism Spaces and Endomorphism Rings Journal of Symbolic Computation. 32: 101-117. DOI: 10.1006/Jsco.2001.0454  0.659
1999 Heath LS, Pemmaraju SV. Stack and queue layouts of directed acyclic graphs: Part II Siam Journal On Computing. 28: 1588-1626. DOI: 10.1137/S0097539795280287  0.307
1992 Fox EA, Heath LS, Chen QF, Daoud AM. Practical minimal perfect hash functions for large databases Communications of the Acm. 35: 105-121. DOI: 10.1145/129617.129623  0.323
1992 Heath LS, Leighton FT, Rosenberg AL. Comparing Queues and Stacks As Machines for Laying Out Graphs Siam Journal On Discrete Mathematics. 5: 398-412. DOI: 10.1137/0405031  0.535
1992 Heath LS, Rosenberg AL. Laying out graphs using queues Siam Journal On Computing. 21: 927-958. DOI: 10.1137/0221055  0.545
1990 Greenberg DS, Heath LS, Rosenberg AL. Optimal embeddings of butterfly-like graphs in the hypercube Mathematical Systems Theory. 23: 61-77. DOI: 10.1007/Bf02090766  0.541
1988 Heath LS, Rosenberg AL, Smith BT. The physical mapping problem for parallel architectures Journal of the Acm (Jacm). 35: 603-634. DOI: 10.1145/44483.44489  0.522
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