| Year |
Citation |
Score |
| 2024 |
O'Brien AM, Sawers RJH, Gasca-Pineda J, Baxter I, Eguiarte LE, Ross-Ibarra J, Strauss SY. Teosinte populations exhibit weak local adaptation to their rhizosphere biota despite strong effects of biota source on teosinte fitness and traits. Evolution; International Journal of Organic Evolution. PMID 39277541 DOI: 10.1093/evolut/qpae130 |
0.779 |
|
| 2023 |
Yang N, Wang Y, Liu X, Jin M, Vallebueno-Estrada M, Calfee E, Chen L, Dilkes BP, Gui S, Fan X, Harper TK, Kennett DJ, Li W, Lu Y, Ding J, ... ... Ross-Ibarra J, et al. Two teosintes made modern maize. Science (New York, N.Y.). 382: eadg8940. PMID 38033071 DOI: 10.1126/science.adg8940 |
0.831 |
|
| 2023 |
Sun S, Wang B, Li C, Xu G, Yang J, Hufford MB, Ross-Ibarra J, Wang H, Wang L. Unraveling prevalence and effects of deleterious mutations in maize elite lines across decades of modern breeding. Molecular Biology and Evolution. PMID 37494285 DOI: 10.1093/molbev/msad170 |
0.718 |
|
| 2023 |
Flint-Garcia S, Feldmann MJ, Dempewolf H, Morrell PL, Ross-Ibarra J. Diamonds in the not-so-rough: Wild relative diversity hidden in crop genomes. Plos Biology. 21: e3002235. PMID 37440605 DOI: 10.1371/journal.pbio.3002235 |
0.391 |
|
| 2023 |
Phillips AR, Seetharam AS, Albert PS, AuBuchon-Elder T, Birchler JA, Buckler ES, Gillespie LJ, Hufford MB, Llaca V, Romay MC, Soreng RJ, Kellogg EA, Ross-Ibarra J. A happy accident: a novel turfgrass reference genome. G3 (Bethesda, Md.). PMID 37002915 DOI: 10.1093/g3journal/jkad073 |
0.726 |
|
| 2022 |
Hu H, Crow T, Nojoomi S, Schulz AJ, Estévez-Palmas JM, Hufford MB, Flint-Garcia S, Sawers R, Rellan-Alvarez R, Ross-Ibarra J, Runcie DE. Allele-specific expression reveals multiple paths to highland adaptation in maize. Molecular Biology and Evolution. PMID 36327321 DOI: 10.1093/molbev/msac239 |
0.705 |
|
| 2022 |
Chen L, Luo J, Jin M, Yang N, Liu X, Peng Y, Li W, Phillips A, Cameron B, Bernal JS, Rellán-Álvarez R, Sawers RJH, Liu Q, Yin Y, Ye X, ... ... Ross-Ibarra J, et al. Genome sequencing reveals evidence of adaptive variation in the genus Zea. Nature Genetics. PMID 36266506 DOI: 10.1038/s41588-022-01184-y |
0.761 |
|
| 2022 |
Guerra-García A, Rojas-Barrera IC, Ross-Ibarra J, Papa R, Piñero D. The genomic signature of wild-to-crop introgression during the domestication of scarlet runner bean ( L.). Evolution Letters. 6: 295-307. PMID 35937471 DOI: 10.1002/evl3.285 |
0.456 |
|
| 2022 |
Li C, Guan H, Jing X, Li Y, Wang B, Li Y, Liu X, Zhang D, Liu C, Xie X, Zhao H, Wang Y, Liu J, Zhang P, Hu G, ... ... Ross-Ibarra J, et al. Genomic insights into historical improvement of heterotic groups during modern hybrid maize breeding. Nature Plants. 8: 750-763. PMID 35851624 DOI: 10.1038/s41477-022-01190-2 |
0.427 |
|
| 2022 |
Barnes AC, Rodríguez-Zapata F, Juárez-Núñez KA, Gates DJ, Janzen GM, Kur A, Wang L, Jensen SE, Estévez-Palmas JM, Crow TM, Kavi HS, Pil HD, Stokes RL, Knizner KT, Aguilar-Rangel MR, ... ... Ross-Ibarra J, et al. An adaptive teosinte introgression modulates phosphatidylcholine levels and is associated with maize flowering time. Proceedings of the National Academy of Sciences of the United States of America. 119: e2100036119. PMID 35771940 DOI: 10.1073/pnas.2100036119 |
0.718 |
|
| 2022 |
Hudson AI, Odell SG, Dubreuil P, Tixier MH, Praud S, Runcie DE, Ross-Ibarra J. Analysis of genotype by environment interactions in a maize mapping population. G3 (Bethesda, Md.). PMID 35134181 DOI: 10.1093/g3journal/jkac013 |
0.346 |
|
| 2022 |
Horvath R, Menon M, Stitzer M, Ross-Ibarra J. Controlling for variable transposition rate with an age-adjusted site frequency spectrum. Genome Biology and Evolution. PMID 35104327 DOI: 10.1093/gbe/evac016 |
0.793 |
|
| 2022 |
Perez-Limón S, Li M, Cintora-Martinez GC, Aguilar-Rangel MR, Salazar-Vidal MN, González-Segovia E, Blöcher-Juárez K, Guerrero-Zavala A, Barrales-Gamez B, Carcaño-Macias J, Costich DE, Nieto-Sotelo J, Martinez de la Vega O, Simpson J, Hufford MB, ... Ross-Ibarra J, et al. A B73×Palomero Toluqueño mapping population reveals local adaptation in Mexican highland maize. G3 (Bethesda, Md.). PMID 35100386 DOI: 10.1093/g3journal/jkab447 |
0.739 |
|
| 2022 |
Odell SG, Hudson AI, Praud S, Dubreuil P, Tixier MH, Ross-Ibarra J, Runcie DE. Modeling Allelic Diversity of Multi-parent Mapping Populations Affects Detection of Quantitative Trait Loci. G3 (Bethesda, Md.). PMID 35100382 DOI: 10.1093/g3journal/jkac011 |
0.362 |
|
| 2021 |
Samayoa LF, Olukolu BA, Yang CJ, Chen Q, Stetter MG, York AM, Sanchez-Gonzalez JJ, Glaubitz JC, Bradbury PJ, Romay MC, Sun Q, Yang J, Ross-Ibarra J, Buckler ES, Doebley JF, et al. Domestication reshaped the genetic basis of inbreeding depression in a maize landrace compared to its wild relative, teosinte. Plos Genetics. 17: e1009797. PMID 34928949 DOI: 10.1371/journal.pgen.1009797 |
0.82 |
|
| 2021 |
Stitzer MC, Anderson SN, Springer NM, Ross-Ibarra J. The genomic ecosystem of transposable elements in maize. Plos Genetics. 17: e1009768. PMID 34648488 DOI: 10.1371/journal.pgen.1009768 |
0.669 |
|
| 2021 |
Calfee E, Gates D, Lorant A, Perkins MT, Coop G, Ross-Ibarra J. Selective sorting of ancestral introgression in maize and teosinte along an elevational cline. Plos Genetics. 17: e1009810. PMID 34634032 DOI: 10.1371/journal.pgen.1009810 |
0.481 |
|
| 2021 |
Yang J, Mezmouk S, Baumgarten A, Buckler ES, Guill KE, McMullen MD, Mumm RH, Ross-Ibarra J. Correction: Incomplete dominance of deleterious alleles contributes substantially to trait variation and heterosis in maize. Plos Genetics. 17: e1009825. PMID 34582434 DOI: 10.1371/journal.pgen.1009825 |
0.794 |
|
| 2021 |
Hufford MB, Seetharam AS, Woodhouse MR, Chougule KM, Ou S, Liu J, Ricci WA, Guo T, Olson A, Qiu Y, Della Coletta R, Tittes S, Hudson AI, Marand AP, Wei S, ... ... Ross-Ibarra J, et al. De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes. Science (New York, N.Y.). 373: 655-662. PMID 34353948 DOI: 10.1126/science.abg5289 |
0.834 |
|
| 2021 |
Song B, Buckler ES, Wang H, Wu Y, Rees E, Kellogg EA, Gates DJ, Khaipho-Burch M, Bradbury PJ, Ross-Ibarra J, Hufford MB, Romay MC. Conserved noncoding sequences provide insights into regulatory sequence and loss of gene expression in maize. Genome Research. PMID 34045362 DOI: 10.1101/gr.266528.120 |
0.706 |
|
| 2021 |
Wang L, Josephs EB, Lee KM, Roberts LM, Rellán-Álvarez R, Ross-Ibarra J, Hufford MB. Molecular Parallelism Underlies Convergent Highland Adaptation of Maize Landraces. Molecular Biology and Evolution. PMID 33905497 DOI: 10.1093/molbev/msab119 |
0.732 |
|
| 2021 |
Muyle A, Ross-Ibarra J, Seymour DK, Gaut BS. Gene body methylation is under selection in Arabidopsis thaliana. Genetics. PMID 33871638 DOI: 10.1093/genetics/iyab061 |
0.708 |
|
| 2021 |
Lozano R, Gazave E, Dos Santos JPR, Stetter MG, Valluru R, Bandillo N, Fernandes SB, Brown PJ, Shakoor N, Mockler TC, Cooper EA, Taylor Perkins M, Buckler ES, Ross-Ibarra J, Gore MA. Comparative evolutionary genetics of deleterious load in sorghum and maize. Nature Plants. 7: 17-24. PMID 33452486 DOI: 10.1038/s41477-020-00834-5 |
0.824 |
|
| 2020 |
Xu G, Lyu J, Li Q, Liu H, Wang D, Zhang M, Springer NM, Ross-Ibarra J, Yang J. Evolutionary and functional genomics of DNA methylation in maize domestication and improvement. Nature Communications. 11: 5539. PMID 33139747 DOI: 10.1038/s41467-020-19333-4 |
0.598 |
|
| 2020 |
Zeitler L, Ross-Ibarra J, Stetter MG. Selective Loss of Diversity in Doubled-Haploid Lines from European Maize Landraces. G3 (Bethesda, Md.). PMID 32467127 DOI: 10.1534/G3.120.401196 |
0.829 |
|
| 2020 |
Chen Q, Samayoa LF, Yang CJ, Bradbury PJ, Olukolu BA, Neumeyer MA, Romay MC, Sun Q, Lorant A, Buckler ES, Ross-Ibarra J, Holland JB, Doebley JF. The genetic architecture of the maize progenitor, teosinte, and how it was altered during maize domestication. Plos Genetics. 16: e1008791. PMID 32407310 DOI: 10.1371/Journal.Pgen.1008791 |
0.532 |
|
| 2020 |
Wang B, Lin Z, Li X, Zhao Y, Zhao B, Wu G, Ma X, Wang H, Xie Y, Li Q, Song G, Kong D, Zheng Z, Wei H, Shen R, ... ... Ross-Ibarra J, et al. Genome-wide selection and genetic improvement during modern maize breeding. Nature Genetics. PMID 32341525 DOI: 10.1038/S41588-020-0616-3 |
0.765 |
|
| 2020 |
Turner-Hissong SD, Mabry ME, Beissinger TM, Ross-Ibarra J, Pires JC. Evolutionary insights into plant breeding. Current Opinion in Plant Biology. 54: 93-100. PMID 32325397 DOI: 10.1016/J.Pbi.2020.03.003 |
0.79 |
|
| 2020 |
Torres R, Stetter MG, Hernandez RD, Ross-Ibarra J. The Temporal Dynamics of Background Selection in Non-equilibrium Populations. Genetics. PMID 32071195 DOI: 10.1534/Genetics.119.302892 |
0.819 |
|
| 2020 |
Lorant A, Ross-Ibarra J, Tenaillon M. Genomics of Long- and Short-Term Adaptation in Maize and Teosintes. Methods in Molecular Biology (Clifton, N.J.). 2090: 289-311. PMID 31975172 DOI: 10.7287/Peerj.Preprints.27190V1 |
0.502 |
|
| 2019 |
Anderson SN, Stitzer MC, Zhou P, Ross-Ibarra J, Hirsch CD, Springer NM. Dynamic Patterns of Transcript Abundance of Transposable Element Families in Maize. G3 (Bethesda, Md.). PMID 31506319 DOI: 10.1534/G3.119.400431 |
0.649 |
|
| 2019 |
O'Brien AM, Sawers RJH, Strauss SY, Ross-Ibarra J. Adaptive phenotypic divergence in an annual grass differs across biotic contexts. Evolution; International Journal of Organic Evolution. PMID 31389004 DOI: 10.1111/Evo.13818 |
0.808 |
|
| 2019 |
Anderson SN, Stitzer MC, Brohammer AB, Zhou P, Noshay JM, O'Connor CH, Hirsch CD, Ross-Ibarra J, Hirsch CN, Springer NM. Transposable elements contribute to dynamic genome content in maize. The Plant Journal : For Cell and Molecular Biology. PMID 31381222 DOI: 10.1111/Tpj.14489 |
0.669 |
|
| 2019 |
Xue W, Anderson SN, Wang X, Yang L, Crisp PA, Li Q, Noshay J, Albert PS, Birchler JA, Bilinski P, Stitzer MC, Ross-Ibarra J, Flint-Garcia S, Chen X, Springer NM, et al. Hybrid Decay: A Transgenerational Epigenetic Decline in Vigor and Viability Triggered in Backcross Populations of Teosinte with Maize. Genetics. PMID 31320409 DOI: 10.1534/Genetics.119.302378 |
0.833 |
|
| 2019 |
Gonzalez-Segovia E, Pérez-Limon S, Cíntora-Martínez GC, Guerrero-Zavala A, Janzen GM, Hufford MB, Ross-Ibarra J, Sawers RJH. Characterization of introgression from the teosinte ssp. to Mexican highland maize. Peerj. 7: e6815. PMID 31110920 DOI: 10.7717/Peerj.6815 |
0.694 |
|
| 2019 |
Josephs EB, Berg JJ, Ross-Ibarra J, Coop G. Detecting Adaptive Differentiation in Structured Populations with Genomic Data and Common Gardens. Genetics. PMID 30679259 DOI: 10.1534/Genetics.118.301786 |
0.497 |
|
| 2018 |
Stetter MG, Thornton K, Ross-Ibarra J. Genetic architecture and selective sweeps after polygenic adaptation to distant trait optima. Plos Genetics. 14: e1007794. PMID 30452452 DOI: 10.1371/Journal.Pgen.1007794 |
0.827 |
|
| 2018 |
O'Brien AM, Sawers RJH, Ross-Ibarra J, Strauss SY. Evolutionary Responses to Conditionality in Species Interactions across Environmental Gradients. The American Naturalist. 192: 715-730. PMID 30444650 DOI: 10.1086/700118 |
0.763 |
|
| 2018 |
Stitzer MC, Ross-Ibarra J. Maize domestication and gene interaction. The New Phytologist. PMID 30035321 DOI: 10.1111/Nph.15350 |
0.713 |
|
| 2018 |
Bilinski P, Albert PS, Berg JJ, Birchler JA, Grote MN, Lorant A, Quezada J, Swarts K, Yang J, Ross-Ibarra J. Parallel altitudinal clines reveal trends in adaptive evolution of genome size in Zea mays. Plos Genetics. 14: e1007162. PMID 29746459 DOI: 10.1371/Journal.Pgen.1007162 |
0.84 |
|
| 2018 |
Dawe RK, Lowry EG, Gent JI, Stitzer MC, Swentowsky KW, Higgins DM, Ross-Ibarra J, Wallace JG, Kanizay LB, Alabady M, Qiu W, Tseng KF, Wang N, Gao Z, Birchler JA, et al. A Kinesin-14 Motor Activates Neocentromeres to Promote Meiotic Drive in Maize. Cell. PMID 29628142 DOI: 10.1016/J.Cell.2018.03.009 |
0.616 |
|
| 2018 |
Mei W, Stetter MG, Gates DJ, Stitzer MC, Ross-Ibarra J. Adaptation in plant genomes: Bigger is different. American Journal of Botany. 105: 16-19. PMID 29532920 DOI: 10.1002/Ajb2.1002 |
0.811 |
|
| 2018 |
Aburto-Oropeza O, Johnson AF, Agha M, Allen EB, Allen MF, González JA, Arenas Moreno DM, Beas-Luna R, Butterfield S, Caetano G, Caselle JE, Gaytán GC, Castorani MC, Cat LA, Cavanaugh K, ... ... Ross-Ibarra J, et al. Harnessing cross-border resources to confront climate change Environmental Science & Policy. 87: 128-132. DOI: 10.1016/J.Envsci.2018.01.001 |
0.636 |
|
| 2017 |
Bukowski R, Guo X, Lu Y, Zou C, He B, Rong Z, Wang B, Xu D, Yang B, Xie C, Fan L, Gao S, Xu X, Zhang G, Li Y, ... ... Ross-Ibarra J, et al. Construction of the third generation Zea mays haplotype map. Gigascience. PMID 29300887 DOI: 10.1093/Gigascience/Gix134 |
0.505 |
|
| 2017 |
Wang L, Beissinger TM, Lorant A, Ross-Ibarra C, Ross-Ibarra J, Hufford MB. The interplay of demography and selection during maize domestication and expansion. Genome Biology. 18: 215. PMID 29132403 DOI: 10.1186/S13059-017-1346-4 |
0.842 |
|
| 2017 |
Yang J, Mezmouk S, Baumgarten A, Buckler ES, Guill KE, McMullen MD, Mumm RH, Ross-Ibarra J. Incomplete dominance of deleterious alleles contributes substantially to trait variation and heterosis in maize. Plos Genetics. 13: e1007019. PMID 28953891 DOI: 10.1371/Journal.Pgen.1007019 |
0.841 |
|
| 2017 |
Stetter MG, Gates DJ, Mei W, Ross-Ibarra J. How to make a domesticate. Current Biology : Cb. 27: R896-R900. PMID 28898661 DOI: 10.1016/J.Cub.2017.06.048 |
0.802 |
|
| 2017 |
Lorant A, Pedersen S, Holst I, Hufford MB, Winter K, Piperno D, Ross-Ibarra J. The potential role of genetic assimilation during maize domestication. Plos One. 12: e0184202. PMID 28886108 DOI: 10.1371/Journal.Pone.0184202 |
0.745 |
|
| 2017 |
Aguilar-Rangel MR, Chávez Montes RA, González-Segovia E, Ross-Ibarra J, Simpson JK, Sawers RJH. Allele specific expression analysis identifies regulatory variation associated with stress-related genes in the Mexican highland maize landrace Palomero Toluqueño. Peerj. 5: e3737. PMID 28852597 DOI: 10.7717/Peerj.3737 |
0.417 |
|
| 2017 |
Tiffin P, Ross-Ibarra J. Advances and Limits of Using Population Genetics to Understand Local Adaptation: (Trends in Ecology & Evolution 29, 673-680; 2014). Trends in Ecology & Evolution. PMID 28823588 DOI: 10.1016/J.Tree.2017.08.001 |
0.688 |
|
| 2017 |
Swarts K, Gutaker RM, Benz B, Blake M, Bukowski R, Holland J, Kruse-Peeples M, Lepak N, Prim L, Romay MC, Ross-Ibarra J, Sanchez-Gonzalez JJ, Schmidt C, Schuenemann VJ, Krause J, et al. Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America. Science (New York, N.Y.). 357: 512-515. PMID 28774930 DOI: 10.1126/Science.Aam9425 |
0.499 |
|
| 2017 |
Jiao Y, Peluso P, Shi J, Liang T, Stitzer MC, Wang B, Campbell MS, Stein JC, Wei X, Chin CS, Guill K, Regulski M, Kumari S, Olson A, Gent J, ... ... Ross-Ibarra J, et al. Improved maize reference genome with single-molecule technologies. Nature. PMID 28605751 DOI: 10.1038/Nature22971 |
0.707 |
|
| 2017 |
Bilinski P, Han Y, Hufford MB, Lorant A, Zhang P, Estep MC, Jiang J, Ross-Ibarra J. Genomic abundance is not predictive of tandem repeat localization in grass genomes. Plos One. 12: e0177896. PMID 28570674 DOI: 10.1371/Journal.Pone.0177896 |
0.812 |
|
| 2017 |
Renny-Byfield S, Rodgers-Melnick E, Ross-Ibarra J. Gene fractionation and function in the ancient subgenomes of maize. Molecular Biology and Evolution. PMID 28430989 DOI: 10.1093/Molbev/Msx121 |
0.444 |
|
| 2016 |
Ramos-Madrigal J, Smith BD, Moreno-Mayar JV, Gopalakrishnan S, Ross-Ibarra J, Gilbert MT, Wales N. Genome Sequence of a 5,310-Year-Old Maize Cob Provides Insights into the Early Stages of Maize Domestication. Current Biology : Cb. PMID 27866890 DOI: 10.1016/J.Cub.2016.09.036 |
0.544 |
|
| 2016 |
Velasco D, Hough J, Aradhya M, Ross-Ibarra J. Evolutionary Genomics of Peach and Almond Domestication. G3 (Bethesda, Md.). PMID 27707802 DOI: 10.1534/G3.116.032672 |
0.511 |
|
| 2016 |
Durvasula A, Hoffman PJ, Kent TV, Liu C, Kono TJ, Morrell PL, Ross-Ibarra J. ANGSD-wrapper: utilities for analyzing next generation sequencing data. Molecular Ecology Resources. PMID 27480660 DOI: 10.1111/1755-0998.12578 |
0.788 |
|
| 2016 |
Beissinger TM, Wang L, Crosby K, Durvasula A, Hufford MB, Ross-Ibarra J. Recent demography drives changes in linked selection across the maize genome. Nature Plants. 2: 16084. PMID 27294617 DOI: 10.1038/Nplants.2016.84 |
0.852 |
|
| 2016 |
Wolfgruber TK, Nakashima MM, Schneider KL, Sharma A, Xie Z, Albert PS, Xu R, Bilinski P, Dawe RK, Ross-Ibarra J, Birchler JA, Presting GG. High Quality Maize Centromere 10 Sequence Reveals Evidence of Frequent Recombination Events. Frontiers in Plant Science. 7: 308. PMID 27047500 DOI: 10.3389/Fpls.2016.00308 |
0.802 |
|
| 2016 |
Orozco-Ramírez Q, Ross-Ibarra J, Santacruz-Varela A, Brush S. Maize diversity associated with social origin and environmental variation in Southern Mexico. Heredity. 116: 477-84. PMID 26905463 DOI: 10.1038/Hdy.2016.10 |
0.419 |
|
| 2015 |
da Fonseca RR, Smith BD, Wales N, Cappellini E, Skoglund P, Fumagalli M, Samaniego JA, Carøe C, Ávila-Arcos MC, Hufnagel DE, Korneliussen TS, Vieira FG, Jakobsson M, Arriaza B, Willerslev E, ... ... Ross-Ibarra J, et al. The origin and evolution of maize in the Southwestern United States. Nature Plants. 1: 14003. PMID 27246050 DOI: 10.1038/Nplants.2014.3 |
0.721 |
|
| 2015 |
Sosso D, Luo D, Li QB, Sasse J, Yang J, Gendrot G, Suzuki M, Koch KE, McCarty DR, Chourey PS, Rogowsky PM, Ross-Ibarra J, Yang B, Frommer WB. Seed filling in domesticated maize and rice depends on SWEET-mediated hexose transport. Nature Genetics. PMID 26523777 DOI: 10.1038/Ng.3422 |
0.534 |
|
| 2015 |
Makarevitch I, Waters AJ, West PT, Stitzer M, Hirsch CN, Ross-Ibarra J, Springer NM. Correction: Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress. Plos Genetics. 11: e1005566. PMID 26452261 DOI: 10.1371/Journal.Pgen.1005566 |
0.584 |
|
| 2015 |
Gerke JP, Edwards JW, Guill KE, Ross-Ibarra J, McMullen MD. The Genomic Impacts of Drift and Selection for Hybrid Performance in Maize. Genetics. PMID 26385980 DOI: 10.1534/Genetics.115.182410 |
0.553 |
|
| 2015 |
Takuno S, Ralph P, Swarts K, Elshire RJ, Glaubitz JC, Buckler ES, Hufford MB, Ross-Ibarra J. Independent Molecular Basis of Convergent Highland Adaptation in Maize. Genetics. PMID 26078279 DOI: 10.1534/Genetics.115.178327 |
0.838 |
|
| 2015 |
Vann L, Kono T, Pyhäjärvi T, Hufford MB, Ross-Ibarra J. Natural variation in teosinte at the domestication locus teosinte branched1 (tb1). Peerj. 3: e900. PMID 25909039 DOI: 10.7717/Peerj.900 |
0.818 |
|
| 2015 |
Hake S, Ross-Ibarra J. Genetic, evolutionary and plant breeding insights from the domestication of maize. Elife. 4. PMID 25807085 DOI: 10.7554/Elife.05861 |
0.498 |
|
| 2015 |
Makarevitch I, Waters AJ, West PT, Stitzer M, Hirsch CN, Ross-Ibarra J, Springer NM. Transposable elements contribute to activation of maize genes in response to abiotic stress. Plos Genetics. 11: e1004915. PMID 25569788 DOI: 10.1371/Journal.Pgen.1004915 |
0.637 |
|
| 2015 |
Dyer GA, López-Feldman A, Yúnez-Naude A, Taylor JE, Ross-Ibarra J. Reply to Brush et al.: Wake-up call for crop conservation science. Proceedings of the National Academy of Sciences of the United States of America. 112: E2. PMID 25548196 DOI: 10.1073/Pnas.1422645112 |
0.309 |
|
| 2015 |
Bilinski P, Distor K, Gutierrez-Lopez J, Mendoza GM, Shi J, Dawe RK, Ross-Ibarra J. Diversity and evolution of centromere repeats in the maize genome. Chromosoma. 124: 57-65. PMID 25190528 DOI: 10.1007/S00412-014-0483-8 |
0.833 |
|
| 2015 |
da Fonseca RR, Smith BD, Wales N, Cappellini E, Skoglund P, Fumagalli M, Samaniego JA, Carøe C, Ávila-Arcos MC, Hufnagel DE, Korneliussen TS, Vieira FG, Jakobsson M, Arriaza B, Willerslev E, ... ... Ross-Ibarra J, et al. Erratum: The origin and evolution of maize in the Southwestern United States Nature Plants. 1. DOI: 10.1038/Nplants.2015.7 |
0.647 |
|
| 2015 |
Da Fonseca RR, Smith BD, Wales N, Cappellini E, Skoglund P, Fumagalli M, Samaniego JA, Carøe C, Ávila-Arcos MC, Hufnagel DE, Korneliussen TS, Vieira FG, Jakobsson M, Arriaza B, Willerslev E, ... ... Ross-Ibarra J, et al. The origin and evolution of maize in the Southwestern United States Nature Plants. 1. DOI: 10.1038/nplants.2014.3 |
0.587 |
|
| 2014 |
Tiffin P, Ross-Ibarra J. Advances and limits of using population genetics to understand local adaptation. Trends in Ecology & Evolution. 29: 673-80. PMID 25454508 DOI: 10.1016/J.Tree.2014.10.004 |
0.672 |
|
| 2014 |
Mezmouk S, Ross-Ibarra J. The pattern and distribution of deleterious mutations in maize. G3 (Bethesda, Md.). 4: 163-71. PMID 24281428 DOI: 10.1534/G3.113.008870 |
0.835 |
|
| 2013 |
Waters AJ, Bilinski P, Eichten SR, Vaughn MW, Ross-Ibarra J, Gehring M, Springer NM. Comprehensive analysis of imprinted genes in maize reveals allelic variation for imprinting and limited conservation with other species. Proceedings of the National Academy of Sciences of the United States of America. 110: 19639-44. PMID 24218619 DOI: 10.1073/Pnas.1309182110 |
0.81 |
|
| 2013 |
Pyhäjärvi T, Hufford MB, Mezmouk S, Ross-Ibarra J. Complex patterns of local adaptation in teosinte. Genome Biology and Evolution. 5: 1594-609. PMID 23902747 DOI: 10.1093/Gbe/Evt109 |
0.828 |
|
| 2013 |
Wills DM, Whipple CJ, Takuno S, Kursel LE, Shannon LM, Ross-Ibarra J, Doebley JF. From many, one: genetic control of prolificacy during maize domestication. Plos Genetics. 9: e1003604. PMID 23825971 DOI: 10.1371/Journal.Pgen.1003604 |
0.839 |
|
| 2013 |
McCouch S, Baute GJ, Bradeen J, Bramel P, Bretting PK, Buckler E, Burke JM, Charest D, Cloutier S, Cole G, Dempewolf H, Dingkuhn M, Feuillet C, Gepts P, Grattapaglia D, ... ... Ross-Ibarra J, et al. Agriculture: Feeding the future. Nature. 499: 23-4. PMID 23823779 DOI: 10.1038/499023A |
0.599 |
|
| 2013 |
Hufford MB, Lubinksy P, Pyhäjärvi T, Devengenzo MT, Ellstrand NC, Ross-Ibarra J. The genomic signature of crop-wild introgression in maize. Plos Genetics. 9: e1003477. PMID 23671421 DOI: 10.1371/Journal.Pgen.1003477 |
0.853 |
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| 2013 |
Kanizay LB, Pyhäjärvi T, Lowry EG, Hufford MB, Peterson DG, Ross-Ibarra J, Dawe RK. Diversity and abundance of the abnormal chromosome 10 meiotic drive complex in Zea mays. Heredity. 110: 570-7. PMID 23443059 DOI: 10.1038/Hdy.2013.2 |
0.806 |
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| 2013 |
Melters DP, Bradnam KR, Young HA, Telis N, May MR, Ruby JG, Sebra R, Peluso P, Eid J, Rank D, Garcia JF, DeRisi JL, Smith T, Tobias C, Ross-Ibarra J, et al. Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution. Genome Biology. 14: R10. PMID 23363705 DOI: 10.1186/Gb-2013-14-1-R10 |
0.44 |
|
| 2013 |
Hufford MB, Lubinksy P, Pyhäjärvi T, Devengenzo MT, Ellstrand NC, Ross-Ibarra J. Correction: The Genomic Signature of Crop-Wild Introgression in Maize Plos Genetics. 9. DOI: 10.1371/Annotation/2Eef7B5B-29B2-412F-8472-8Fd7F9Bd65Ab |
0.753 |
|
| 2013 |
Provance MC, García-Ruiz I, Thommes C, Ross-Ibarra J. Population genetics and ethnobotany of cultivated Diospyros riojae Gómez Pompa (Ebenaceae), an endangered fruit crop from Mexico Genetic Resources and Crop Evolution. 60: 2171-2182. DOI: 10.1007/S10722-013-0015-Z |
0.385 |
|
| 2012 |
Hufford MB, Bilinski P, Pyhäjärvi T, Ross-Ibarra J. Teosinte as a model system for population and ecological genomics. Trends in Genetics : Tig. 28: 606-15. PMID 23021022 DOI: 10.1016/J.Tig.2012.08.004 |
0.831 |
|
| 2012 |
van Heerwaarden J, Hufford MB, Ross-Ibarra J. Historical genomics of North American maize. Proceedings of the National Academy of Sciences of the United States of America. 109: 12420-5. PMID 22802642 DOI: 10.1073/Pnas.1209275109 |
0.866 |
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| 2012 |
Swanson-Wagner R, Briskine R, Schaefer R, Hufford MB, Ross-Ibarra J, Myers CL, Tiffin P, Springer NM. Reshaping of the maize transcriptome by domestication. Proceedings of the National Academy of Sciences of the United States of America. 109: 11878-83. PMID 22753482 DOI: 10.1073/Pnas.1201961109 |
0.788 |
|
| 2012 |
Hufford MB, Xu X, van Heerwaarden J, Pyhäjärvi T, Chia JM, Cartwright RA, Elshire RJ, Glaubitz JC, Guill KE, Kaeppler SM, Lai J, Morrell PL, Shannon LM, Song C, Springer NM, ... ... Ross-Ibarra J, et al. Comparative population genomics of maize domestication and improvement. Nature Genetics. 44: 808-11. PMID 22660546 DOI: 10.1038/Ng.2309 |
0.832 |
|
| 2012 |
Chia JM, Song C, Bradbury PJ, Costich D, de Leon N, Doebley J, Elshire RJ, Gaut B, Geller L, Glaubitz JC, Gore M, Guill KE, Holland J, Hufford MB, Lai J, ... ... Ross-Ibarra J, et al. Maize HapMap2 identifies extant variation from a genome in flux. Nature Genetics. 44: 803-7. PMID 22660545 DOI: 10.1038/Ng.2313 |
0.851 |
|
| 2012 |
Fang Z, Pyhäjärvi T, Weber AL, Dawe RK, Glaubitz JC, González Jde J, Ross-Ibarra C, Doebley J, Morrell PL, Ross-Ibarra J. Megabase-scale inversion polymorphism in the wild ancestor of maize. Genetics. 191: 883-94. PMID 22542971 DOI: 10.1534/Genetics.112.138578 |
0.753 |
|
| 2012 |
Cook JP, McMullen MD, Holland JB, Tian F, Bradbury P, Ross-Ibarra J, Buckler ES, Flint-Garcia SA. Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels. Plant Physiology. 158: 824-34. PMID 22135431 DOI: 10.1104/Pp.111.185033 |
0.371 |
|
| 2012 |
Muñoz-Diez C, Vitte C, Ross-Ibarra J, Gaut BS, Tenaillon MI. Using nextgen sequencing to investigate genome size variation and transposable element content Topics in Current Genetics. 24: 41-58. DOI: 10.1007/978-3-642-31842-9-3 |
0.707 |
|
| 2011 |
Morrell PL, Buckler ES, Ross-Ibarra J. Crop genomics: advances and applications. Nature Reviews. Genetics. 13: 85-96. PMID 22207165 DOI: 10.1038/Nrg3097 |
0.493 |
|
| 2011 |
Studer A, Zhao Q, Ross-Ibarra J, Doebley J. Identification of a functional transposon insertion in the maize domestication gene tb1. Nature Genetics. 43: 1160-3. PMID 21946354 DOI: 10.1038/Ng.942 |
0.413 |
|
| 2011 |
Tenaillon MI, Hufford MB, Gaut BS, Ross-Ibarra J. Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians. Genome Biology and Evolution. 3: 219-29. PMID 21296765 DOI: 10.1093/Gbe/Evr008 |
0.815 |
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| 2011 |
van Heerwaarden J, Doebley J, Briggs WH, Glaubitz JC, Goodman MM, de Jesus Sanchez Gonzalez J, Ross-Ibarra J. Genetic signals of origin, spread, and introgression in a large sample of maize landraces. Proceedings of the National Academy of Sciences of the United States of America. 108: 1088-92. PMID 21189301 DOI: 10.1073/Pnas.1013011108 |
0.769 |
|
| 2011 |
Hufford MB, Gepts P, Ross-Ibarra J. Influence of cryptic population structure on observed mating patterns in the wild progenitor of maize (Zea mays ssp. parviglumis). Molecular Ecology. 20: 46-55. PMID 21070423 DOI: 10.1111/J.1365-294X.2010.04924.X |
0.777 |
|
| 2010 |
Eckert AJ, van Heerwaarden J, Wegrzyn JL, Nelson CD, Ross-Ibarra J, González-Martínez SC, Neale DB. Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., Pinaceae). Genetics. 185: 969-82. PMID 20439779 DOI: 10.1534/Genetics.110.115543 |
0.782 |
|
| 2010 |
Shi J, Wolf SE, Burke JM, Presting GG, Ross-Ibarra J, Dawe RK. Widespread gene conversion in centromere cores. Plos Biology. 8: e1000327. PMID 20231874 DOI: 10.1371/Journal.Pbio.1000327 |
0.454 |
|
| 2010 |
Van Heerwaarden J, Ross-Ibarra J, Doebley J, Glaubitz JC, González Jde J, Gaut BS, Eguiarte LE. Fine scale genetic structure in the wild ancestor of maize (Zea mays ssp. parviglumis). Molecular Ecology. 19: 1162-73. PMID 20163543 DOI: 10.1111/J.1365-294X.2010.04559.X |
0.833 |
|
| 2010 |
Whitney KD, Baack EJ, Hamrick JL, Godt MJ, Barringer BC, Bennett MD, Eckert CG, Goodwillie C, Kalisz S, Leitch IJ, Ross-Ibarra J. A role for nonadaptive processes in plant genome size evolution? Evolution; International Journal of Organic Evolution. 64: 2097-109. PMID 20148953 DOI: 10.1111/J.1558-5646.2010.00967.X |
0.64 |
|
| 2010 |
Hollister JD, Ross-Ibarra J, Gaut BS. Indel-associated mutation rate varies with mating system in flowering plants. Molecular Biology and Evolution. 27: 409-16. PMID 19825943 DOI: 10.1093/Molbev/Msp249 |
0.809 |
|
| 2010 |
van Heerwaarden J, van Eeuwijk FA, Ross-Ibarra J. Genetic diversity in a crop metapopulation. Heredity. 104: 28-39. PMID 19738636 DOI: 10.1038/Hdy.2009.110 |
0.746 |
|
| 2010 |
Ross-Ibarra J, Wright SI, Foxe JP, Kawabe A, DeRose-Wilson L, Gos G, Charlesworth D, Gaut BS. Correction: Patterns of Polymorphism and Demographic History in Natural Populations of Arabidopsis lyrata Plos One. 5. DOI: 10.1371/Annotation/83559Ebe-03Be-4Bf7-A1B8-B34B2903742A |
0.782 |
|
| 2009 |
May MR, Provance MC, Sanders AC, Ellstrand NC, Ross-Ibarra J. A Pleistocene clone of Palmer's oak persisting in Southern California. Plos One. 4: e8346. PMID 20041136 DOI: 10.1371/Journal.Pone.0008346 |
0.631 |
|
| 2009 |
Gore MA, Chia JM, Elshire RJ, Sun Q, Ersoz ES, Hurwitz BL, Peiffer JA, McMullen MD, Grills GS, Ross-Ibarra J, Ware DH, Buckler ES. A first-generation haplotype map of maize. Science (New York, N.Y.). 326: 1115-7. PMID 19965431 DOI: 10.1126/Science.1177837 |
0.563 |
|
| 2009 |
Zhang LB, Zhu Q, Wu ZQ, Ross-Ibarra J, Gaut BS, Ge S, Sang T. Selection on grain shattering genes and rates of rice domestication. The New Phytologist. 184: 708-20. PMID 19674325 DOI: 10.1111/J.1469-8137.2009.02984.X |
0.757 |
|
| 2009 |
Ross-Ibarra J, Tenaillon M, Gaut BS. Historical divergence and gene flow in the genus Zea. Genetics. 181: 1399-413. PMID 19153259 DOI: 10.1534/Genetics.108.097238 |
0.731 |
|
| 2008 |
Ross-Ibarra J, Gaut BS. Multiple domestications do not appear monophyletic. Proceedings of the National Academy of Sciences of the United States of America. 105: E105; author reply E. PMID 19057016 DOI: 10.1073/Pnas.0809042105 |
0.731 |
|
| 2008 |
Lockton S, Ross-Ibarra J, Gaut BS. Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata. Proceedings of the National Academy of Sciences of the United States of America. 105: 13965-70. PMID 18772373 DOI: 10.1073/Pnas.0804671105 |
0.841 |
|
| 2008 |
Ross-Ibarra J, Wright SI, Foxe JP, Kawabe A, DeRose-Wilson L, Gos G, Charlesworth D, Gaut BS. Patterns of polymorphism and demographic history in natural populations of Arabidopsis lyrata. Plos One. 3: e2411. PMID 18545707 DOI: 10.1371/Journal.Pone.0002411 |
0.824 |
|
| 2008 |
Gaut BS, Ross-Ibarra J. Selection on major components of angiosperm genomes. Science (New York, N.Y.). 320: 484-6. PMID 18436777 DOI: 10.1126/Science.1153586 |
0.773 |
|
| 2007 |
Ross-Ibarra J, Morrell PL, Gaut BS. Plant domestication, a unique opportunity to identify the genetic basis of adaptation. Proceedings of the National Academy of Sciences of the United States of America. 104: 8641-8. PMID 17494757 DOI: 10.1073/Pnas.0700643104 |
0.774 |
|
| 2007 |
Ross-Ibarra J. Genome size and recombination in angiosperms: a second look. Journal of Evolutionary Biology. 20: 800-6. PMID 17305845 DOI: 10.1111/J.1420-9101.2006.01275.X |
0.452 |
|
| 2005 |
Ross-Ibarra J. Quantitative trait loci and the study of plant domestication. Genetica. 123: 197-204. PMID 15881692 DOI: 10.1007/S10709-004-2744-6 |
0.481 |
|
| 2004 |
Ross-Ibarra J. The evolution of recombination under domestication: a test of two hypotheses. The American Naturalist. 163: 105-12. PMID 14767840 DOI: 10.1086/380606 |
0.307 |
|
| 2002 |
Ross-Ibarra J, Molina-Cruz A. The ethnobotany of chaya (Cnidoscolus aconitifolius ssp. aconitifolius Breckon): A nutritious Maya vegetable Economic Botany. 56: 350-365. DOI: 10.1663/0013-0001(2002)056[0350:Teocca]2.0.Co;2 |
0.308 |
|
| 2002 |
Ross-Ibarra J. Genetic Data Analysis II. Methods for Discrete Population Genentic Data Economic Botany. 56: 216-216. DOI: 10.1663/0013-0001(2002)056[0216:Gdaimf]2.0.Co;2 |
0.366 |
|
| 2001 |
Neel MC, Ross-Ibarra J, Ellstrand NC. Implications of mating patterns for conservation of the endangered plant Eriogonum ovalifolium var. vineum (Polygonaceae). American Journal of Botany. 88: 1214-22. PMID 11454621 DOI: 10.2307/3558332 |
0.766 |
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