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Reza Vafabakhsh, Ph.D. - Publications

Affiliations: 
Northwestern University, Evanston, IL 
Area:
General Biophysics, Molecular Physics
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Kordon SP, Cechova K, Bandekar SJ, Leon K, Dutka P, Siffer G, Kossiakoff AA, Vafabakhsh R, Araç D. Structural analysis and conformational dynamics of a holo-adhesion GPCR reveal interplay between extracellular and transmembrane domains. Biorxiv : the Preprint Server For Biology. PMID 38464178 DOI: 10.1101/2024.02.25.581807  0.378
2023 Talyzina A, Han Y, Banerjee C, Fishbain S, Reyes A, Vafabakhsh R, He Y. Structural basis of TFIIIC-dependent RNA polymerase III transcription initiation. Molecular Cell. PMID 37402369 DOI: 10.1016/j.molcel.2023.06.015  0.574
2023 Talyzina A, Han Y, Banerjee C, Fishbain S, Reyes A, Vafabakhsh R, He Y. Structural basis of TFIIIC-dependent RNA Polymerase III transcription initiation. Biorxiv : the Preprint Server For Biology. PMID 37292922 DOI: 10.1101/2023.05.16.540967  0.564
2022 Ives AN, Dunn HA, Afsari HS, Seckler HDS, Foroutan MJ, Chavez E, Melani RD, Fellers RT, LeDuc RD, Thomas PM, Martemyanov KA, Kelleher NL, Vafabakhsh R. Middle-Down Mass Spectrometry Reveals Activity-Modifying Phosphorylation Barcode in a Class C G Protein-Coupled Receptor. Journal of the American Chemical Society. PMID 36475650 DOI: 10.1021/jacs.2c10697  0.349
2022 Banerjee C, Liauw BW, Vafabakhsh R. Visualizing the Conformational Dynamics of Membrane Receptors Using Single-Molecule FRET. Journal of Visualized Experiments : Jove. PMID 36062999 DOI: 10.3791/64254  0.696
2022 Liauw BW, Foroutan A, Schamber MR, Lu W, Samareh Afsari H, Vafabakhsh R. Conformational fingerprinting of allosteric modulators in metabotropic glutamate receptor 2. Elife. 11. PMID 35775730 DOI: 10.7554/eLife.78982  0.435
2022 Schamber MR, Vafabakhsh R. Mechanism of sensitivity modulation in the calcium-sensing receptor via electrostatic tuning. Nature Communications. 13: 2194. PMID 35459864 DOI: 10.1038/s41467-022-29897-y  0.397
2021 Liauw BW, Afsari HS, Vafabakhsh R. Conformational rearrangement during activation of a metabotropic glutamate receptor. Nature Chemical Biology. PMID 33398167 DOI: 10.1038/s41589-020-00702-5  0.547
2016 Levitz J, Habrian C, Bharill S, Fu Z, Vafabakhsh R, Isacoff EY. Mechanism of Assembly and Cooperativity of Homomeric and Heteromeric Metabotropic Glutamate Receptors. Neuron. PMID 27641494 DOI: 10.1016/J.Neuron.2016.08.036  0.562
2016 Dai L, Singh D, Vafabakhsh R, Mahalingam M, Kottadiel V, Chemla Y, Ha T, Rao VB. Mechanism of Coordination of the Bacteriophage T4 DNA Packaging Motor Analyzed by Real-Time Single Molecule Fluorescence Assay Biophysical Journal. 110: 46a. DOI: 10.1016/J.Bpj.2015.11.316  0.331
2016 Levitz J, Habrian C, Bharill S, Fu Z, Vafabakhsh R, Isacoff E. Optical Probing of Metabotropic Glutamate Receptors Biophysical Journal. 110: 532a. DOI: 10.1016/J.Bpj.2015.11.2846  0.513
2015 Wang S, Vafabakhsh R, Borschel WF, Ha T, Nichols CG. Structural dynamics of potassium-channel gating revealed by single-molecule FRET. Nature Structural & Molecular Biology. PMID 26641713 DOI: 10.1038/Nsmb.3138  0.381
2015 Vafabakhsh R, Levitz J, Isacoff EY. Conformational dynamics of a class C G-protein-coupled receptor. Nature. 524: 497-501. PMID 26258295 DOI: 10.1038/Nature14679  0.586
2015 Kim TJ, Joo C, Seong J, Vafabakhsh R, Botvinick EL, Berns MW, Palmer AE, Wang N, Ha T, Jakobsson E, Sun J, Wang Y. Distinct mechanisms regulating mechanical force-induced Ca²⁺ signals at the plasma membrane and the ER in human MSCs. Elife. 4: e04876. PMID 25667984 DOI: 10.7554/Elife.04876  0.319
2015 Vafabakhsh R, Levitz J, Isacoff EY. Conformational dynamics of a class C G-protein-coupled receptor Nature. 524: 497-501. DOI: 10.1038/nature14679  0.331
2015 Levitz J, Vafabakhsh R, Bharill S, Bharill S, Isacoff EY. Assembly and Cooperativity of Metabotropic Glutamate Receptors Biophysical Journal. 108: 416a-417a. DOI: 10.1016/J.Bpj.2014.11.2282  0.521
2015 Vafabakhsh R, Levitz J, Isacoff EY. Confrontational Dynamics of a GPCR Revealed by Single Molecule FRET Biophysical Journal. 108: 3-9. DOI: 10.1016/J.Bpj.2014.11.1915  0.505
2014 Kondabagil K, Dai L, Vafabakhsh R, Ha T, Draper B, Rao VB. Designing a nine cysteine-less DNA packaging motor from bacteriophage T4 reveals new insights into ATPase structure and function. Virology. 468: 660-8. PMID 25443668 DOI: 10.1016/J.Virol.2014.08.033  0.333
2014 Vafabakhsh R, Kondabagil K, Earnest T, Lee KS, Zhang Z, Dai L, Dahmen KA, Rao VB, Ha T. Single-molecule packaging initiation in real time by a viral DNA packaging machine from bacteriophage T4. Proceedings of the National Academy of Sciences of the United States of America. 111: 15096-101. PMID 25288726 DOI: 10.1073/Pnas.1407235111  0.393
2014 Wang S, Vafabakhsh R, Borschel W, Ha T, Nichols CG. Structural Dynamics Underlying Pip2 Modulation of Kir Channels Revealed by Single Molecule FRET Biophysical Journal. 106: 748a. DOI: 10.1016/J.Bpj.2013.11.4119  0.445
2014 Levitz J, Bharill S, Vafabakhsh R, Isacoff EY. Optical Probing of Metabotropic Glutamate Receptor Assembly and Cooperativity Biophysical Journal. 106: 20a-21a. DOI: 10.1016/J.Bpj.2013.11.168  0.539
2014 Vafabakhsh R, Levitz J, Isacoff EY. The Activation Dynamics of Class C Gpcrs Revealed by Single Molecule FRET Biophysical Journal. 106: 194a. DOI: 10.1016/J.Bpj.2013.11.1149  0.552
2012 Vafabakhsh R, Ha T. Extreme bendability of DNA less than 100 base pairs long revealed by single-molecule cyclization. Science (New York, N.Y.). 337: 1097-101. PMID 22936778 DOI: 10.1126/Science.1224139  0.332
2012 Morrison EA, DeKoster GT, Dutta S, Vafabakhsh R, Clarkson MW, Bahl A, Kern D, Ha T, Henzler-Wildman KA. Antiparallel EmrE exports drugs by exchanging between asymmetric structures. Nature. 481: 45-50. PMID 22178925 DOI: 10.1038/Nature10703  0.365
2012 Vafabakhsh R, Kondabagil K, Dai L, Zhang Z, Rao VB, Ha T. Analyzing DNA Packaging Initiation of Bacteriophage T4 by a Real-Time Single Molecule Fluorescence Assay Biophysical Journal. 102: 643a. DOI: 10.1016/J.Bpj.2011.11.3497  0.352
2012 Morrison E, Dekoster G, Dutta S, Clarkson M, Vafabakhsh R, Kern D, Ha T, Henzler-Wildman K. Direct Observation of Conformational Exchange in the Small Multidrug Resistance Transporter EmrE Biophysical Journal. 102: 215a. DOI: 10.1016/J.Bpj.2011.11.1179  0.307
2011 Zhang Z, Kottadiel VI, Vafabakhsh R, Dai L, Chemla YR, Ha T, Rao VB. A promiscuous DNA packaging machine from bacteriophage T4. Plos Biology. 9: e1000592. PMID 21358801 DOI: 10.1371/Journal.Pbio.1000592  0.328
2011 Vafabakhsh R, Ha T. High Flexibility of Short DNA Probed by Single Molecule Cyclization Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.1185  0.32
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