| Year |
Citation |
Score |
| 2024 |
Harke J, Lee JR, Nguyen SC, Arab A, Rakowiecki SM, Hugelier S, Paliou C, Rauseo A, Yunker R, Xu K, Yao Y, Lakadamyali M, Andrey G, Epstein DJ, Joyce EF. Multiple allelic configurations govern long-range Shh enhancer-promoter communication in the embryonic forebrain. Molecular Cell. PMID 39579767 DOI: 10.1016/j.molcel.2024.10.042 |
0.599 |
|
| 2024 |
Mokhtaridoost M, Chalmers JJ, Soleimanpoor M, McMurray BJ, Lato DF, Nguyen SC, Musienko V, Nash JO, Espeso-Gil S, Ahmed S, Delfosse K, Browning JWL, Barutcu AR, Wilson MD, Liehr T, et al. Inter-chromosomal contacts demarcate genome topology along a spatial gradient. Nature Communications. 15: 9813. PMID 39532865 DOI: 10.1038/s41467-024-53983-y |
0.691 |
|
| 2024 |
Kotb NM, Ulukaya G, Chavan A, Nguyen SC, Proskauer L, Joyce EF, Hasson D, Jagannathan M, Rangan P. Genome organization regulates nuclear pore complex formation and promotes differentiation during oogenesis. Genes & Development. PMID 38866556 DOI: 10.1101/gad.351402.123 |
0.668 |
|
| 2024 |
Chavan A, Isenhart R, Nguyen SC, Kotb NM, Harke J, Sintsova A, Ulukaya G, Uliana F, Ashiono C, Kutay U, Pegoraro G, Rangan P, Joyce EF, Jagannathan M. A nuclear architecture screen in identifies Stonewall as a link between chromatin position at the nuclear periphery and germline stem cell fate. Genes & Development. PMID 38866555 DOI: 10.1101/gad.351424.123 |
0.652 |
|
| 2024 |
Liu Y, Li Q, Song L, Gong C, Tang S, Budinich KA, Vanderbeck A, Mathias KM, Wertheim GB, Nguyen SC, Outen R, Joyce EF, Maillard I, Wan L. Condensate-promoting ENL mutation drives tumorigenesis in vivo through dynamic regulation of histone modifications and gene expression. Cancer Discovery. PMID 38655899 DOI: 10.1158/2159-8290.CD-23-0876 |
0.591 |
|
| 2023 |
Malachowski T, Chandradoss KR, Boya R, Zhou L, Cook AL, Su C, Pham K, Haws SA, Kim JH, Ryu HS, Ge C, Luppino JM, Nguyen SC, Titus KR, Gong W, et al. Spatially coordinated heterochromatinization of long synaptic genes in fragile X syndrome. Cell. 186: 5840-5858.e36. PMID 38134876 DOI: 10.1016/j.cell.2023.11.019 |
0.619 |
|
| 2023 |
Kotb NM, Ulukaya G, Chavan A, Nguyen SC, Proskauer L, Joyce E, Hasson D, Jagannathan M, Rangan P. Genome organization regulates nuclear pore complex formation and promotes differentiation during Drosophila oogenesis. Biorxiv : the Preprint Server For Biology. PMID 38014330 DOI: 10.1101/2023.11.15.567233 |
0.668 |
|
| 2023 |
Chavan A, Isenhart R, Nguyen SC, Kotb N, Harke J, Sintsova A, Ulukaya G, Uliana F, Ashiono C, Kutay U, Pegoraro G, Rangan P, Joyce EF, Jagannathan M. A nuclear architecture screen in identifies Stonewall as a link between chromatin position at the nuclear periphery and germline stem cell fate. Biorxiv : the Preprint Server For Biology. PMID 38014085 DOI: 10.1101/2023.11.17.567611 |
0.652 |
|
| 2023 |
Yu R, Roseman S, Siegenfeld AP, Nguyen SC, Joyce EF, Liau BB, Krantz ID, Alexander KA, Berger SL. CTCF/cohesin organize the ground state of chromatin-nuclear speckle association. Biorxiv : the Preprint Server For Biology. PMID 37961560 DOI: 10.1101/2023.07.22.550178 |
0.609 |
|
| 2023 |
Alexander KA, Yu R, Skuli N, Coffey NJ, Nguyen S, Faunce C, Huang H, Dardani IP, Good AL, Lim J, Li C, Biddle N, Joyce EF, Raj A, Lee D, et al. Nuclear speckles regulate HIF-2α programs and correlate with patient survival in kidney cancer. Biorxiv : the Preprint Server For Biology. PMID 37745397 DOI: 10.1101/2023.09.14.557228 |
0.593 |
|
| 2023 |
Park DS, Nguyen SC, Isenhart R, Shah PP, Kim W, Barnett RJ, Chandra A, Luppino JM, Harke J, Wai M, Walsh PJ, Abdill RJ, Yang R, Lan Y, Yoon S, et al. High-throughput Oligopaint screen identifies druggable 3D genome regulators. Nature. PMID 37438531 DOI: 10.1038/s41586-023-06340-w |
0.672 |
|
| 2023 |
Shah PP, Keough KC, Gjoni K, Santini GT, Abdill RJ, Wickramasinghe NM, Dundes CE, Karnay A, Chen A, Salomon REA, Walsh PJ, Nguyen SC, Whalen S, Joyce EF, Loh KM, et al. An atlas of lamina-associated chromatin across twelve human cell types reveals an intermediate chromatin subtype. Genome Biology. 24: 16. PMID 36691074 DOI: 10.1186/s13059-023-02849-5 |
0.638 |
|
| 2022 |
Luppino JM, Field A, Nguyen SC, Park DS, Shah PP, Abdill RJ, Lan Y, Yunker R, Jain R, Adelman K, Joyce EF. Co-depletion of NIPBL and WAPL balance cohesin activity to correct gene misexpression. Plos Genetics. 18: e1010528. PMID 36449519 DOI: 10.1371/journal.pgen.1010528 |
0.626 |
|
| 2022 |
Wang W, Chandra A, Goldman N, Yoon S, Ferrari EK, Nguyen SC, Joyce EF, Vahedi G. TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors. Nature Immunology. PMID 35726060 DOI: 10.1038/s41590-022-01232-z |
0.637 |
|
| 2021 |
Linares-Saldana R, Kim W, Bolar NA, Zhang H, Koch-Bojalad BA, Yoon S, Shah PP, Karnay A, Park DS, Luppino JM, Nguyen SC, Padmanabhan A, Smith CL, Poleshko A, Wang Q, et al. Publisher Correction: BRD4 orchestrates genome folding to promote neural crest differentiation. Nature Genetics. PMID 34725478 DOI: 10.1038/s41588-021-00980-2 |
0.599 |
|
| 2021 |
Linares-Saldana R, Kim W, Bolar NA, Zhang H, Koch-Bojalad BA, Yoon S, Shah PP, Karnay A, Park DS, Luppino JM, Nguyen SC, Padmanabhan A, Smith CL, Poleshko A, Wang Q, et al. BRD4 orchestrates genome folding to promote neural crest differentiation. Nature Genetics. 53: 1480-1492. PMID 34611363 DOI: 10.1038/s41588-021-00934-8 |
0.648 |
|
| 2021 |
Alexander KA, Coté A, Nguyen SC, Zhang L, Gholamalamdari O, Agudelo-Garcia P, Lin-Shiao E, Tanim KMA, Lim J, Biddle N, Dunagin MC, Good CR, Mendoza MR, Little SC, Belmont A, et al. p53 mediates target gene association with nuclear speckles for amplified RNA expression. Molecular Cell. PMID 33823140 DOI: 10.1016/j.molcel.2021.03.006 |
0.57 |
|
| 2020 |
Johnstone SE, Reyes A, Qi Y, Adriaens C, Hegazi E, Pelka K, Chen JH, Zou LS, Drier Y, Hecht V, Shoresh N, Selig MK, Lareau CA, Iyer S, Nguyen SC, et al. Large-Scale Topological Changes Restrain Malignant Progression in Colorectal Cancer. Cell. PMID 32841603 DOI: 10.1016/J.Cell.2020.07.030 |
0.633 |
|
| 2020 |
Nguyen HQ, Chattoraj S, Castillo D, Nguyen SC, Nir G, Lioutas A, Hershberg EA, Martins NMC, Reginato PL, Hannan M, Beliveau BJ, Church GM, Daugharthy ER, Marti-Renom MA, Wu CT. 3D mapping and accelerated super-resolution imaging of the human genome using in situ sequencing. Nature Methods. PMID 32719531 DOI: 10.1038/S41592-020-0890-0 |
0.741 |
|
| 2020 |
Luppino JM, Park DS, Nguyen SC, Lan Y, Xu Z, Yunker R, Joyce EF. Cohesin promotes stochastic domain intermingling to ensure proper regulation of boundary-proximal genes. Nature Genetics. PMID 32572210 DOI: 10.1038/S41588-020-0647-9 |
0.623 |
|
| 2019 |
Gozalo A, Duke A, Lan Y, Pascual-Garcia P, Talamas JA, Nguyen SC, Shah PP, Jain R, Joyce EF, Capelson M. Core Components of the Nuclear Pore Bind Distinct States of Chromatin and Contribute to Polycomb Repression. Molecular Cell. PMID 31784359 DOI: 10.1016/J.Molcel.2019.10.017 |
0.66 |
|
| 2019 |
Rosin LF, Crocker O, Isenhart RL, Nguyen SC, Xu Z, Joyce EF. Chromosome territory formation attenuates the translocation potential of cells. Elife. 8. PMID 31682226 DOI: 10.7554/Elife.49553 |
0.669 |
|
| 2019 |
AlHaj Abed J, Erceg J, Goloborodko A, Nguyen SC, McCole RB, Saylor W, Fudenberg G, Lajoie BR, Dekker J, Mirny LA, Wu CT. Highly structured homolog pairing reflects functional organization of the Drosophila genome. Nature Communications. 10: 4485. PMID 31582763 DOI: 10.1038/S41467-019-12208-3 |
0.779 |
|
| 2019 |
Erceg J, AlHaj Abed J, Goloborodko A, Lajoie BR, Fudenberg G, Abdennur N, Imakaev M, McCole RB, Nguyen SC, Saylor W, Joyce EF, Senaratne TN, Hannan MA, Nir G, Dekker J, et al. The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos. Nature Communications. 10: 4486. PMID 31582744 DOI: 10.1038/S41467-019-12211-8 |
0.791 |
|
| 2019 |
Poleshko A, Smith CL, Nguyen SC, Sivaramakrishnan P, Wong KG, Murray JI, Lakadamyali M, Joyce EF, Jain R, Epstein JA. H3K9me2 orchestrates inheritance of spatial positioning of peripheral heterochromatin through mitosis. Elife. 8. PMID 31573510 DOI: 10.7554/Elife.49278 |
0.69 |
|
| 2019 |
Nguyen SC, Joyce EF. Programmable Chromosome Painting with Oligopaints. Methods in Molecular Biology (Clifton, N.J.). 2038: 167-180. PMID 31407284 DOI: 10.1007/978-1-4939-9674-2_11 |
0.662 |
|
| 2019 |
King TD, Leonard CJ, Cooper JC, Nguyen S, Joyce EF, Phadnis N. Recurrent losses and rapid evolution of the condensin II complex in insects. Molecular Biology and Evolution. PMID 31270536 DOI: 10.1093/Molbev/Msz140 |
0.645 |
|
| 2019 |
Saint-Leandre B, Nguyen SC, Levine MT. Diversification and collapse of a telomere elongation mechanism. Genome Research. PMID 31138619 DOI: 10.1101/Gr.245001.118 |
0.4 |
|
| 2019 |
Fields BD, Nguyen SC, Nir G, Kennedy S. A multiplexed DNA FISH strategy for assessing genome architecture in . Elife. 8. PMID 31084706 DOI: 10.7554/Elife.42823 |
0.448 |
|
| 2019 |
Petrovic J, Zhou Y, Fasolino M, Goldman N, Schwartz GW, Mumbach MR, Nguyen SC, Rome KS, Sela Y, Zapataro Z, Blacklow SC, Kruhlak MJ, Shi J, Aster JC, Joyce EF, et al. Oncogenic Notch Promotes Long-Range Regulatory Interactions within Hyperconnected 3D Cliques. Molecular Cell. PMID 30745086 DOI: 10.1016/J.Molcel.2019.01.006 |
0.659 |
|
| 2019 |
Rosin LF, Crocker O, Isenhart RL, Nguyen SC, Xu Z, Joyce EF. Author response: Chromosome territory formation attenuates the translocation potential of cells Elife. DOI: 10.7554/Elife.49553.013 |
0.64 |
|
| 2019 |
Poleshko A, Smith CL, Nguyen SC, Sivaramakrishnan P, Wong KG, Murray JI, Lakadamyali M, Joyce EF, Jain R, Epstein JA. Author response: H3K9me2 orchestrates inheritance of spatial positioning of peripheral heterochromatin through mitosis Elife. DOI: 10.7554/Elife.49278.029 |
0.573 |
|
| 2019 |
Fields BD, Nguyen SC, Nir G, Kennedy S. Author response: A multiplexed DNA FISH strategy for assessing genome architecture in Caenorhabditis elegans Elife. DOI: 10.7554/Elife.42823.030 |
0.354 |
|
| 2018 |
Nir G, Farabella I, Pérez Estrada C, Ebeling CG, Beliveau BJ, Sasaki HM, Lee SH, Nguyen SC, McCole RB, Chattoraj S, Erceg J, AlHaj Abed J, Martins NMC, Nguyen HQ, Hannan MA, et al. Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling. Plos Genetics. 14: e1007872. PMID 30586358 DOI: 10.1371/Journal.Pgen.1007872 |
0.766 |
|
| 2018 |
Ou K, Yu M, Moss NG, Wang YJ, Wang AW, Nguyen SC, Jiang C, Feleke E, Kameswaran V, Joyce EF, Naji A, Glaser B, Avrahami D, Kaestner KH. Targeted demethylation at the CDKN1C/p57 induces human β cell replication. The Journal of Clinical Investigation. PMID 30352048 DOI: 10.1172/Jci99170 |
0.596 |
|
| 2018 |
Rosin LF, Nguyen SC, Joyce EF. Condensin II drives large-scale folding and spatial partitioning of interphase chromosomes in Drosophila nuclei. Plos Genetics. 14: e1007393. PMID 30001329 DOI: 10.1371/Journal.Pgen.1007393 |
0.665 |
|
| 2018 |
Beliveau BJ, Kishi JY, Nir G, Sasaki HM, Saka SK, Nguyen SC, Wu CT, Yin P. OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes. Proceedings of the National Academy of Sciences of the United States of America. PMID 29463736 DOI: 10.1073/Pnas.1714530115 |
0.755 |
|
| 2016 |
Nguyen SC, Yu S, Oberlick E, Wu CT. An Unexpected Regulatory Cascade Governs a Core Function of the Drosophila PRC1 Chromatin Protein Su(z)2. Genetics. PMID 27881472 DOI: 10.1534/Genetics.116.187849 |
0.549 |
|
| 2016 |
Senaratne TN, Joyce EF, Nguyen SC, Wu CT. Investigating the Interplay between Sister Chromatid Cohesion and Homolog Pairing in Drosophila Nuclei. Plos Genetics. 12: e1006169. PMID 27541002 DOI: 10.1371/Journal.Pgen.1006169 |
0.668 |
|
| 2012 |
Liu Y, Deng L, Nguyen SC, Au CL, Shao C, Tischfield JA, Liang L. A human cell-based reporter detects microhomology-mediated end joining. Mutation Research. 731: 140-4. PMID 22197482 DOI: 10.1016/J.Mrfmmm.2011.12.003 |
0.373 |
|
| 2011 |
Serrano L, Liang L, Chang Y, Deng L, Maulion C, Nguyen S, Tischfield JA. Homologous recombination conserves DNA sequence integrity throughout the cell cycle in embryonic stem cells. Stem Cells and Development. 20: 363-74. PMID 20491544 DOI: 10.1089/Scd.2010.0159 |
0.41 |
|
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