| Year |
Citation |
Score |
| 2015 |
Guintini L, Charton R, Peyresaubes F, Thoma F, Conconi A. Nucleosome positioning, nucleotide excision repair and photoreactivation in Saccharomyces cerevisiae. Dna Repair. 36: 98-104. PMID 26429065 DOI: 10.1016/J.Dnarep.2015.09.012 |
0.652 |
|
| 2012 |
Bøe CA, Krohn M, Rødland GE, Capiaghi C, Maillard O, Thoma F, Boye E, Grallert B. Induction of a G1-S checkpoint in fission yeast. Proceedings of the National Academy of Sciences of the United States of America. 109: 9911-6. PMID 22665798 DOI: 10.1073/Pnas.1204901109 |
0.465 |
|
| 2011 |
Fink M, Thompson JS, Thoma F. Contributions of histone H3 nucleosome core surface mutations to chromatin structures, silencing and DNA repair. Plos One. 6: e26210. PMID 22053185 DOI: 10.1371/Journal.Pone.0026210 |
0.567 |
|
| 2008 |
Lettieri T, Kraehenbuehl R, Capiaghi C, Livingstone-Zatchej M, Thoma F. Functionally distinct nucleosome-free regions in yeast require Rad7 and Rad16 for nucleotide excision repair. Dna Repair. 7: 734-43. PMID 18329964 DOI: 10.1016/J.Dnarep.2008.01.016 |
0.597 |
|
| 2007 |
Fink M, Imholz D, Thoma F. Contribution of the serine 129 of histone H2A to chromatin structure. Molecular and Cellular Biology. 27: 3589-600. PMID 17353265 DOI: 10.1128/MCB.02077-06 |
0.519 |
|
| 2006 |
Bucceri A, Kapitza K, Thoma F. Rapid accessibility of nucleosomal DNA in yeast on a second time scale. The Embo Journal. 25: 3123-32. PMID 16778764 DOI: 10.1038/Sj.Emboj.7601196 |
0.662 |
|
| 2005 |
Thoma F. Repair of UV lesions in nucleosomes--intrinsic properties and remodeling. Dna Repair. 4: 855-69. PMID 15925550 DOI: 10.1016/J.Dnarep.2005.04.005 |
0.618 |
|
| 2005 |
Meier A, Thoma F. RNA polymerase I transcription factors in active yeast rRNA gene promoters enhance UV damage formation and inhibit repair. Molecular and Cellular Biology. 25: 1586-95. PMID 15713619 DOI: 10.1128/MCB.25.5.1586-1595.2005 |
0.528 |
|
| 2004 |
Capiaghi C, Ho TV, Thoma F. Kinetochores prevent repair of UV damage in Saccharomyces cerevisiae centromeres. Molecular and Cellular Biology. 24: 6907-18. PMID 15282293 DOI: 10.1128/Mcb.24.16.6907-6918.2004 |
0.649 |
|
| 2003 |
Valerius O, Brendel C, Wagner C, Krappmann S, Thoma F, Braus GH. Nucleosome position-dependent and -independent activation of HIS7 epression in Saccharomyces cerevisiae by different transcriptional activators. Eukaryotic Cell. 2: 876-85. PMID 14555470 |
0.371 |
|
| 2003 |
Livingstone-Zatchej M, Marcionelli R, Möller K, de Pril R, Thoma F. Repair of UV lesions in silenced chromatin provides in vivo evidence for a compact chromatin structure. The Journal of Biological Chemistry. 278: 37471-9. PMID 12882973 DOI: 10.1074/jbc.M306335200 |
0.613 |
|
| 2003 |
Gaillard H, Fitzgerald DJ, Smith CL, Peterson CL, Richmond TJ, Thoma F. Chromatin remodeling activities act on UV-damaged nucleosomes and modulate DNA damage accessibility to photolyase. The Journal of Biological Chemistry. 278: 17655-63. PMID 12637512 DOI: 10.1074/Jbc.M300770200 |
0.62 |
|
| 2002 |
Suter B, Thoma F. DNA-repair by photolyase reveals dynamic properties of nucleosome positioning in vivo. Journal of Molecular Biology. 319: 395-406. PMID 12051916 DOI: 10.1016/S0022-2836(02)00291-7 |
0.623 |
|
| 2002 |
Meier A, Livingstone-Zatchej M, Thoma F. Repair of active and silenced rDNA in yeast: the contributions of photolyase and transcription-couples nucleotide excision repair. The Journal of Biological Chemistry. 277: 11845-52. PMID 11805105 DOI: 10.1074/jbc.M110941200 |
0.516 |
|
| 2001 |
Lopez S, Livingstone-Zatchej M, Jourdain S, Thoma F, Sentenac A, Marsolier M. High-mobility-group proteins NHP6A and NHP6B participate in activation of the RNA polymerase III SNR6 gene. Molecular and Cellular Biology. 21: 3096-3104. PMID 11287614 DOI: 10.1128/Mcb.21.9.3096-3104.2001 |
0.348 |
|
| 2000 |
Suter B, Schnappauf G, Thoma F. Poly(dA.dT) sequences exist as rigid DNA structures in nucleosome-free yeast promoters in vivo. Nucleic Acids Research. 28: 4083-9. PMID 11058103 DOI: 10.1093/Nar/28.21.4083 |
0.568 |
|
| 2000 |
Suter B, Wellinger RE, Thoma F. DNA repair in a yeast origin of replication: contributions of photolyase and nucleotide excision repair. Nucleic Acids Research. 28: 2060-8. PMID 10773073 DOI: 10.1093/Nar/28.10.2060 |
0.605 |
|
| 1999 |
Thoma F. Light and dark in chromatin repair: repair of UV-induced DNA lesions by photolyase and nucleotide excision repair. The Embo Journal. 18: 6585-6598. PMID 10581233 DOI: 10.1093/Emboj/18.23.6585 |
0.622 |
|
| 1999 |
Li S, Livingstone-Zatchej M, Gupta R, Meijer M, Thoma F, Smerdon MJ. Nucleotide excision repair in a constitutive and inducible gene of a yeast minichromosome in intact cells Nucleic Acids Research. 27: 3610-3620. PMID 10446254 DOI: 10.1093/Nar/27.17.3610 |
0.51 |
|
| 1999 |
Suter B, Livingstone-Zatchej M, Thoma F. Mapping cyclobutane-pyrimidine dimers in DNA and using DNA-repair by photolyase for chromatin analysis in yeast. Methods in Enzymology. 304: 447-61. PMID 10372376 DOI: 10.1016/S0076-6879(99)04027-6 |
0.526 |
|
| 1999 |
Aboussekhra A, Thoma F. TATA‐binding protein promotes the selective formation of UV‐induced (6‐4)‐photoproducts and modulates DNA repair in the TATA box The Embo Journal. 18: 433-443. PMID 9889199 DOI: 10.1093/Emboj/18.2.433 |
0.625 |
|
| 1998 |
Aboussekhra A, Thoma F. Nucleotide excision repair and photolyase preferentially repair the nontranscribed strand of RNA polymerase III-transcribed genes in Saccharomyces cerevisiae Genes & Development. 12: 411-421. PMID 9450934 DOI: 10.1101/Gad.12.3.411 |
0.557 |
|
| 1998 |
Schieferstein U, Thoma F. Site-specific repair of cyclobutane pyrimidine dimers in a positioned nucleosome by photolyase and T4 endonuclease V in vitro. The Embo Journal. 17: 306-316. PMID 9427764 DOI: 10.1093/Emboj/17.1.306 |
0.626 |
|
| 1997 |
Livingstone-Zatchej M, Meier A, Suter B, Thoma F. RNA polymerase II transcription inhibits DNA repair by photolyase in the transcribed strand of active yeast genes. Nucleic Acids Research. 25: 3795-800. PMID 9380500 DOI: 10.1093/Nar/25.19.3795 |
0.551 |
|
| 1997 |
Wellinger RE, Thoma F. Nucleosome structure and positioning modulate nucleotide excision repair in the non-transcribed strand of an active gene. The Embo Journal. 16: 5046-5056. PMID 9305646 DOI: 10.1093/Emboj/16.16.5046 |
0.65 |
|
| 1997 |
Suter B, Livingstone-Zatchej M, Thoma F. Chromatin structure modulates DNA repair by photolyase in vivo. The Embo Journal. 16: 2150-60. PMID 9155040 DOI: 10.1093/emboj/16.8.2150 |
0.644 |
|
| 1997 |
Suter B, Livingstone-Zatchej M, Meier A, Thoma F. P VI.3 Chromatin structure and transcription affect repair of cyclobutane pyrlmldine dimers by photolyase Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis. 379: S42. DOI: 10.1016/S0027-5107(97)82738-8 |
0.424 |
|
| 1996 |
Schieferstein U, Thoma F. Modulation of Cyclobutane Pyrimidine Dimer Formation in a Positioned Nucleosome Containing Poly(dA·dT) Tracts† Biochemistry. 35: 7705-7714. PMID 8672471 DOI: 10.1021/Bi953011R |
0.4 |
|
| 1996 |
Tanaka S, Livingstone-Zatchej M, Thoma F. Chromatin structure of the yeast URA3 gene at high resolution provides insight into structure and positioning of nucleosomes in the chromosomal context. Journal of Molecular Biology. 257: 919-34. PMID 8632475 DOI: 10.1006/JMBI.1996.0212 |
0.356 |
|
| 1996 |
Wellinger RE, Thoma F. Taq DNA polymerase blockage at pyrimidine dimers. Nucleic Acids Research. 24: 1578-9. PMID 8628696 DOI: 10.1093/NAR/24.8.1578 |
0.489 |
|
| 1996 |
Cavalli G, Bachmann D, Thoma F. Inactivation of topoisomerases affects transcription-dependent chromatin transitions in rDNA but not in a gene transcribed by RNA polymerase II Embo Journal. 15: 590-597. PMID 8599942 DOI: 10.1002/J.1460-2075.1996.Tb00391.X |
0.558 |
|
| 1995 |
Marsolier MC, Tanaka S, Livingstone-Zatchej M, Grunstein M, Thoma F, Sentenac A. Reciprocal interferences between nucleosomal organization and transcriptional activity of the yeast SNR6 gene. Genes & Development. 9: 410-22. PMID 7883166 DOI: 10.1101/Gad.9.4.410 |
0.428 |
|
| 1994 |
Tanaka S, Halter D, Livingstone-Zatchej M, Reszel B, Thoma F. Transcription through the yeast origin of replication ARS1 ends at the ABFI binding site and affects extrachromosomal maintenance of minichromosomes. Nucleic Acids Research. 22: 3904-10. PMID 7937110 DOI: 10.1093/NAR/22.19.3904 |
0.305 |
|
| 1993 |
Cavalli G, Thoma F. Chromatin transitions during activation and repression of galactose-regulated genes in yeast Embo Journal. 12: 4603-4613. PMID 8223470 DOI: 10.1002/J.1460-2075.1993.Tb06149.X |
0.592 |
|
| 1992 |
Bernardi F, Koller T, Thoma F. The ade6 gene of the fission yeast Schizosaccharomyces pombe has the same chromatin structure in the chromosome and in plasmids. Yeast (Chichester, England). 7: 547-58. PMID 1767586 DOI: 10.1002/YEA.320070603 |
0.36 |
|
| 1992 |
Bedoyan J, Gupta R, Thoma F, Smerdon M. Transcription, nucleosome stability, and DNA repair in a yeast minichromosome. Journal of Biological Chemistry. 267: 5996-6005. DOI: 10.1016/s0021-9258(18)42653-1 |
0.586 |
|
| 1992 |
Bernardi F, Zatchej M, Thoma F. Species specific protein--DNA interactions may determine the chromatin units of genes in S.cerevisiae and in S.pombe. The Embo Journal. 11: 1177-1185. DOI: 10.1002/j.1460-2075.1992.tb05158.x |
0.383 |
|
| 1991 |
Thoma F. Structural changes in nucleosomes during transcription: strip, split or flip? Trends in Genetics : Tig. 7: 175-7. PMID 2068789 DOI: 10.1016/0168-9525(91)90429-T |
0.306 |
|
| 1990 |
Losa R, Omari S, Thoma F. Poly(dA).poly(dT) rich sequences are not sufficient to exclude nucleosome formation in a constitutive yeast promoter. Nucleic Acids Research. 18: 3495-502. PMID 2194162 DOI: 10.1093/NAR/18.12.3495 |
0.316 |
|
| 1990 |
Smerdon MJ, Thoma F. Site-specific DNA repair at the nucleosome level in a yeast minichromosome Cell. 61: 675-684. PMID 2188732 DOI: 10.1016/0092-8674(90)90479-X |
0.394 |
|
| 1990 |
Smerdon MJ, Bedoyan J, Thoma F. DNA repair in a small yeast plasmid folded into chromatin Nucleic Acids Research. 18: 2045-2051. PMID 2186374 DOI: 10.1093/Nar/18.8.2045 |
0.484 |
|
| 1989 |
Thoma F, Zatchej M. Chromatin folding modulates nucleosome positioning in yeast minichromosomes. Cell. 55: 945-53. PMID 3060264 DOI: 10.1016/0092-8674(88)90240-1 |
0.478 |
|
| 1988 |
Ness PJ, Koller T, Thoma F. Topoisomerase I cleavage sites identified and mapped in the chromatin of Dictyostelium ribosomal RNA genes. Journal of Molecular Biology. 200: 127-39. PMID 2837575 DOI: 10.1016/0022-2836(88)90338-5 |
0.505 |
|
| 1987 |
Thoma F. Protein-DNA interactions and nuclease-sensitive regions determine nucleosome positions on yeast plasmid chromatin. Journal of Molecular Biology. 190: 177-90. PMID 3540310 DOI: 10.1016/0022-2836(86)90291-3 |
0.453 |
|
| 1987 |
Rau DC, Gellert M, Thoma F, Maxwell A. Structure of the DNA gyrase-DNA complex as revealed by transient electric dichroism Journal of Molecular Biology. 193: 555-569. PMID 3035196 DOI: 10.1016/0022-2836(87)90266-X |
0.479 |
|
| 1986 |
Pederson DS, Venkatesan M, Thoma F, Simpson RT. Isolation of an episomal yeast gene and replication origin as chromatin. Proceedings of the National Academy of Sciences of the United States of America. 83: 7206-10. PMID 3532106 DOI: 10.1073/Pnas.83.19.7206 |
0.437 |
|
| 1985 |
Thoma F, Simpson RT. Local protein-DNA interactions may determine nucleosome positions on yeast plasmids. Nature. 315: 250-2. PMID 3889654 DOI: 10.1038/315250A0 |
0.528 |
|
| 1985 |
Simpson RT, Thoma F, Brubaker JM. Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones: a model system for study of higher order structure. Cell. 42: 799-808. PMID 2996776 DOI: 10.1016/0092-8674(85)90276-4 |
0.473 |
|
| 1984 |
Thoma F, Bergman LW, Simpson RT. Nuclease digestion of circular TRP1ARS1 chromatin reveals positioned nucleosomes separated by nuclease-sensitive regions. Journal of Molecular Biology. 177: 715-33. PMID 6384525 DOI: 10.1016/0022-2836(84)90046-9 |
0.506 |
|
| 1982 |
Thoma F, Koller T. Unravelled nucleosomes, nucleosome beads and higher order structures of chromatin: influence of non-histone components and histone H1. Journal of Molecular Biology. 149: 709-33. PMID 7310891 DOI: 10.1016/0022-2836(81)90354-5 |
0.328 |
|
| 1979 |
Thoma F, Koller T, Klug A. Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin. The Journal of Cell Biology. 83: 403-27. PMID 387806 DOI: 10.1083/JCB.83.2.403 |
0.389 |
|
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