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Derek A. Debe, Ph.D. - Publications

Affiliations: 
California Institute of Technology, Pasadena, CA 
Area:
Structure and function of membrane proteins
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10 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2008 Poleksic A, Fienup M, Danzer JF, Debe DA. A different look at the quality of modeled three-dimensional protein structures. Journal of Bioinformatics and Computational Biology. 6: 335-45. PMID 18464326 DOI: 10.1142/S0219720008003424  0.393
2006 Hambly K, Danzer J, Muskal S, Debe DA. Interrogating the druggable genome with structural informatics. Molecular Diversity. 10: 273-81. PMID 17031532 DOI: 10.1007/S11030-006-9035-3  0.38
2006 Poleksic A, Danzer JF, Palmer BA, Olafson BD, Debe DA. SPINFAST: using structure alignment profiles to enhance the accuracy and assess the reliability of protein side-chain modeling. Proteins. 65: 953-8. PMID 17006949 DOI: 10.1002/Prot.21154  0.404
2006 Palmer B, Danzer JF, Hambly K, Debe DA. StructSorter: a method for continuously updating a comprehensive protein structure alignment database. Journal of Chemical Information and Modeling. 46: 1871-6. PMID 16859318 DOI: 10.1021/Ci0601012  0.467
2006 Debe DA, Danzer JF, Goddard WA, Poleksic A. STRUCTFAST: protein sequence remote homology detection and alignment using novel dynamic programming and profile-profile scoring. Proteins. 64: 960-7. PMID 16786595 DOI: 10.1002/Prot.21049  0.334
2002 Zhang D, Vaidehi N, Goddard WA, Danzer JF, Debe D. Structure-based design of mutant Methanococcus jannaschii tyrosyl-tRNA synthetase for incorporation of O-methyl-L-tyrosine. Proceedings of the National Academy of Sciences of the United States of America. 99: 6579-84. PMID 12011422 DOI: 10.1073/Pnas.052150499  0.31
1999 Debe DA, Goddard WA. First principles prediction of protein folding rates. Journal of Molecular Biology. 294: 619-25. PMID 10610784 DOI: 10.1006/Jmbi.1999.3278  0.448
1999 Debe DA, Carlson MJ, Goddard WA. The topomer-sampling model of protein folding. Proceedings of the National Academy of Sciences of the United States of America. 96: 2596-601. PMID 10077555 DOI: 10.1073/Pnas.96.6.2596  0.441
1999 Debe DA, Carlson MJ, Sadanobu J, Chan SI, Goddard WA. Protein Fold Determination from Sparse Distance Restraints: The Restrained Generic Protein Direct Monte Carlo Method Journal of Physical Chemistry B. 103: 3001-3008. DOI: 10.1021/Jp983429+  0.52
1998 Cavagnero S, Debe DA, Zhou ZH, Adams MW, Chan SI. Kinetic role of electrostatic interactions in the unfolding of hyperthermophilic and mesophilic rubredoxins. Biochemistry. 37: 3369-76. PMID 9521657 DOI: 10.1021/Bi9721795  0.44
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