| Year |
Citation |
Score |
| 2020 |
Inamoto I, Sheoran I, Popa SC, Hussain M, Shin JA. Combining Rational Design and Continuous Evolution on Minimalist Proteins That Target the E-box DNA Site. Acs Chemical Biology. PMID 33370105 DOI: 10.1021/acschembio.0c00684 |
0.384 |
|
| 2020 |
Popa SC, Inamoto I, Thuronyi BW, Shin JA. Phage-Assisted Continuous Evolution (PACE): A Guide Focused on Evolving Protein-DNA Interactions. Acs Omega. 5: 26957-26966. PMID 33134656 DOI: 10.1021/acsomega.0c03508 |
0.309 |
|
| 2017 |
Inamoto I, Chen G, Shin JA. The DNA target determines the dimerization partner selected by bHLHZ-like hybrid proteins AhRJun and ArntFos. Molecular Biosystems. PMID 28102866 DOI: 10.1039/c6mb00795c |
0.489 |
|
| 2012 |
Chan IS, Al-Sarraj T, Shahravan SH, Fedorova AV, Shin JA. The bZIP dimer localizes at DNA full-sites where each basic region can alternately translocate and bind to subsites at the half-site. Biochemistry. 51: 6632-43. PMID 22856882 DOI: 10.1021/Bi300718F |
0.634 |
|
| 2012 |
Ahmadpour F, Ghirlando R, De Jong AT, Gloyd M, Shin JA, Guarné A. Crystal structure of the minimalist Max-E47 protein chimera. Plos One. 7: e32136. PMID 22389683 DOI: 10.1371/journal.pone.0032136 |
0.385 |
|
| 2012 |
Chen G, De Jong AT, Shin JA. Forced homodimerization of the c-Fos leucine zipper in designed bHLHZ-like hybrid proteins MaxbHLH-Fos and ArntbHLH-Fos. Molecular Biosystems. 8: 1286-96. PMID 22301802 DOI: 10.1039/c2mb05354c |
0.395 |
|
| 2011 |
Shahravan SH, Li IT, Truong K, Shin JA. FRep: a fluorescent protein-based bioprobe for in vivo detection of protein-DNA interactions. Analytical Chemistry. 83: 9643-50. PMID 22074380 DOI: 10.1021/Ac2024602 |
0.388 |
|
| 2010 |
Xu J, De Jong AT, Chen G, Chow HK, Damaso CO, Schwartz Mittelman A, Shin JA. Reengineering natural design by rational design and in vivo library selection: the HLH subdomain in bHLHZ proteins is a unique requirement for DNA-binding function. Protein Engineering, Design & Selection : Peds. 23: 337-46. PMID 20086039 DOI: 10.1093/protein/gzp082 |
0.408 |
|
| 2009 |
Xu J, Chen G, De Jong AT, Shahravan SH, Shin JA. Max-E47, a designed minimalist protein that targets the E-box DNA site in vivo and in vitro. Journal of the American Chemical Society. 131: 7839-48. PMID 19449889 DOI: 10.1021/ja901306q |
0.432 |
|
| 2008 |
Chow HK, Xu J, Shahravan SH, De Jong AT, Chen G, Shin JA. Hybrids of the bHLH and bZIP protein motifs display different DNA-binding activities in vivo vs. in vitro. Plos One. 3: e3514. PMID 18949049 DOI: 10.1371/journal.pone.0003514 |
0.408 |
|
| 2008 |
Chen G, DenBoer L, Shin J. Design of a single plasmid-based modified yeast one-hybrid system for investigation of in vivo protein-protein and protein-DNA interactions. Biotechniques. 45: 295-304. PMID 18778253 DOI: 10.2144/000112901 |
0.327 |
|
| 2008 |
Chen G, Shin JA. AhR/Arnt:XRE interaction: turning false negatives into true positives in the modified yeast one-hybrid assay. Analytical Biochemistry. 382: 101-6. PMID 18722998 DOI: 10.1016/j.ab.2008.07.026 |
0.372 |
|
| 2008 |
Chan IS, Shahravan SH, Fedorova AV, Shin JA. The bZIP targets overlapping DNA subsites within a half-site, resulting in increased binding affinities. Biochemistry. 47: 9646-52. PMID 18702507 DOI: 10.1021/Bi800355T |
0.653 |
|
| 2008 |
Shahravan SH, Qu X, Chan IS, Shin JA. Enhancing the specificity of the enterokinase cleavage reaction to promote efficient cleavage of a fusion tag. Protein Expression and Purification. 59: 314-9. PMID 18406169 DOI: 10.1016/J.Pep.2008.02.015 |
0.593 |
|
| 2007 |
Chan IS, Fedorova AV, Shin JA. The GCN4 bZIP targets noncognate gene regulatory sequences: quantitative investigation of binding at full and half sites. Biochemistry. 46: 1663-71. PMID 17279629 DOI: 10.1021/bi0617613 |
0.656 |
|
| 2006 |
Fedorova AV, Chan IS, Shin JA. The GCN4 bZIP can bind to noncognate gene regulatory sequences. Biochimica Et Biophysica Acta. 1764: 1252-9. PMID 16784907 DOI: 10.1016/J.Bbapap.2006.04.009 |
0.623 |
|
| 2004 |
Shin JA. Minimalist proteins: Design of new molecular recognition scaffolds. Pure and Applied Chemistry. Chimie Pure Et Appliquee. 76: 1579-1590. PMID 19461942 |
0.453 |
|
| 2004 |
Shin JA. Minimalist proteins: Design of new molecular recognition scaffolds Pure and Applied Chemistry. 76: 1579-1590. |
0.45 |
|
| 2002 |
Bird GH, Lajmi AR, Shin JA. Sequence-specific recognition of DNA by hydrophobic, alanine-rich mutants of the basic region/leucine zipper motif investigated by fluorescence anisotropy. Biopolymers. 65: 10-20. PMID 12209468 DOI: 10.1002/bip.10205 |
0.493 |
|
| 2002 |
Kise KJ, Shin JA. The contribution of the methyl groups on thymine bases to binding specificity and affinity by alanine-rich mutants of the bZIP motif. Bioorganic & Medicinal Chemistry. 9: 2485-91. PMID 11553490 DOI: 10.1016/S0968-0896(01)00216-4 |
0.397 |
|
| 2000 |
Lajmi AR, Wallace TR, Shin JA. Short, hydrophobic, alanine-based proteins based on the basic region/leucine zipper protein motif: overcoming inclusion body formation and protein aggregation during overexpression, purification, and renaturation. Protein Expression and Purification. 18: 394-403. PMID 10733895 DOI: 10.1006/prep.2000.1209 |
0.407 |
|
| 2000 |
Lajmi AR, Lovrencic ME, Wallace TR, Thomlinson RR, Shin JA. Minimalist, alanine-based, helical protein dimers bind to specific DNA sites [2] Journal of the American Chemical Society. 122: 5638-5639. DOI: 10.1021/ja993025a |
0.546 |
|
| 1997 |
Shin JA. Specific DNA binding peptide-derivatized solid support Bioorganic and Medicinal Chemistry Letters. 7: 2367-2372. DOI: 10.1016/S0960-894X(97)00436-8 |
0.466 |
|
| 1991 |
Distefano MD, Shin JA, Dervan PB. Cooperative binding of oligonucleotides to DNA by triple helix formation: dimerization via Watson-Crick hydrogen bonds Journal of the American Chemical Society. 113: 5901-5902. DOI: 10.1021/Ja00015A076 |
0.482 |
|
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