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Ann S. Hammonds, Ph.D. - Publications

Affiliations: 
2002 University of California, Berkeley, Berkeley, CA, United States 
Area:
Genetics, Molecular Biology, Cell Biology
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23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Fisher WW, Hammonds AS, Weiszmann R, Booth BW, Gevirtzman L, Patton J, Kubo C, Waterston RH, Celniker SE. A modERN Resource: Identification of Drosophila Transcription Factor candidate target genes using RNAi. Genetics. PMID 36652461 DOI: 10.1093/genetics/iyad004  0.358
2018 Arbel H, Basu S, Fisher WW, Hammonds AS, Wan KH, Park S, Weiszmann R, Booth BW, Keranen SV, Henriquez C, Shams Solari O, Bickel PJ, Biggin MD, Celniker SE, Brown JB. Exploiting regulatory heterogeneity to systematically identify enhancers with high accuracy. Proceedings of the National Academy of Sciences of the United States of America. PMID 30598455 DOI: 10.1073/Pnas.1808833115  0.315
2017 Kudron MM, Victorsen A, Gevirtzman L, Hillier LW, Fisher WW, Vafeados D, Kirkey M, Hammonds AS, Gersch J, Ammouri H, Wall ML, Moran J, Steffen D, Szynkarek M, Seabrook-Sturgis S, et al. The modERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors. Genetics. PMID 29284660 DOI: 10.1534/Genetics.117.300657  0.373
2017 Wan KH, Yu C, Park S, Hammonds AS, Booth BW, Celniker SE. Complete Genome Sequence of Acetobacter tropicalis Oregon-R-modENCODE Strain BDGP1, an Acetic Acid Bacterium Found in the Drosophila melanogaster Gut. Genome Announcements. 5. PMID 29146844 DOI: 10.1128/Genomea.01020-17  0.319
2017 Wan KH, Yu C, Park S, Hammonds AS, Booth BW, Celniker SE. Complete Genome Sequence of Lactobacillus plantarum Oregon-R-modENCODE Strain BDGP2 Isolated from Drosophila melanogaster Gut. Genome Announcements. 5. PMID 29025953 DOI: 10.1128/Genomea.01155-17  0.315
2017 Wan KH, Yu C, Park S, Hammonds AS, Booth BW, Celniker SE. Complete Genome Sequence of Bacillus kochii Oregon-R-modENCODE Strain BDGP4, Isolated from Drosophila melanogaster Gut. Genome Announcements. 5. PMID 28983001 DOI: 10.1128/Genomea.01074-17  0.321
2017 Wan KH, Yu C, Park S, Hammonds AS, Booth BW, Celniker SE. Complete Genome Sequence of Enterococcus durans Oregon-R-modENCODE Strain BDGP3, a Lactic Acid Bacterium Found in the Drosophila melanogaster Gut. Genome Announcements. 5. PMID 28982997 DOI: 10.1128/Genomea.01041-17  0.316
2016 Wu S, Joseph A, Hammonds AS, Celniker SE, Yu B, Frise E. Stability-driven nonnegative matrix factorization to interpret spatial gene expression and build local gene networks. Proceedings of the National Academy of Sciences of the United States of America. PMID 27071099 DOI: 10.1073/Pnas.1521171113  0.407
2014 Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, ... ... Hammonds A, et al. Comparative analysis of the transcriptome across distant species. Nature. 512: 445-8. PMID 25164755 DOI: 10.1038/Nature13424  0.43
2014 Brown JB, Boley N, Eisman R, May GE, Stoiber MH, Duff MO, Booth BW, Wen J, Park S, Suzuki AM, Wan KH, Yu C, Zhang D, Carlson JW, Cherbas L, ... ... Hammonds AS, et al. Diversity and dynamics of the Drosophila transcriptome. Nature. 512: 393-9. PMID 24670639 DOI: 10.1038/Nature12962  0.461
2013 Hammonds AS, Bristow CA, Fisher WW, Weiszmann R, Wu S, Hartenstein V, Kellis M, Yu B, Frise E, Celniker SE. Spatial expression of transcription factors in Drosophila embryonic organ development. Genome Biology. 14: R140. PMID 24359758 DOI: 10.1186/Gb-2013-14-12-R140  0.417
2012 Fisher WW, Li JJ, Hammonds AS, Brown JB, Pfeiffer BD, Weiszmann R, MacArthur S, Thomas S, Stamatoyannopoulos JA, Eisen MB, Bickel PJ, Biggin MD, Celniker SE. DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 109: 21330-5. PMID 23236164 DOI: 10.1073/Pnas.1209589110  0.421
2011 Thomas S, Li XY, Sabo PJ, Sandstrom R, Thurman RE, Canfield TK, Giste E, Fisher W, Hammonds A, Celniker SE, Biggin MD, Stamatoyannopoulos JA. Dynamic reprogramming of chromatin accessibility during Drosophila embryo development. Genome Biology. 12: R43. PMID 21569360 DOI: 10.1186/Gb-2011-12-5-R43  0.417
2011 Yu C, Wan KH, Hammonds AS, Stapleton M, Carlson JW, Celniker SE. Development of expression-ready constructs for generation of proteomic libraries. Methods in Molecular Biology (Clifton, N.J.). 723: 257-72. PMID 21370071 DOI: 10.1007/978-1-61779-043-0_17  0.412
2011 Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, ... ... Hammonds A, et al. The developmental transcriptome of Drosophila melanogaster. Nature. 471: 473-9. PMID 21179090 DOI: 10.1038/Nature09715  0.437
2010 Kazemian M, Blatti C, Richards A, McCutchan M, Wakabayashi-Ito N, Hammonds AS, Celniker SE, Kumar S, Wolfe SA, Brodsky MH, Sinha S. Quantitative analysis of the Drosophila segmentation regulatory network using pattern generating potentials. Plos Biology. 8. PMID 20808951 DOI: 10.1371/Journal.Pbio.1000456  0.412
2010 Frise E, Hammonds AS, Celniker SE. Systematic image-driven analysis of the spatial Drosophila embryonic expression landscape. Molecular Systems Biology. 6: 345. PMID 20087342 DOI: 10.1038/Msb.2009.102  0.416
2009 Weiszmann R, Hammonds AS, Celniker SE. Determination of gene expression patterns using high-throughput RNA in situ hybridization to whole-mount Drosophila embryos. Nature Protocols. 4: 605-18. PMID 19360017 DOI: 10.1038/Nprot.2009.55  0.352
2008 Pfeiffer BD, Jenett A, Hammonds AS, Ngo TT, Misra S, Murphy C, Scully A, Carlson JW, Wan KH, Laverty TR, Mungall C, Svirskas R, Kadonaga JT, Doe CQ, Eisen MB, et al. Tools for neuroanatomy and neurogenetics in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 105: 9715-20. PMID 18621688 DOI: 10.1073/Pnas.0803697105  0.403
2006 Hammonds AS, Fristrom JW. Mutational analysis of Stubble-stubbloid gene structure and function in Drosophila leg and bristle morphogenesis. Genetics. 172: 1577-93. PMID 16322506 DOI: 10.1534/Genetics.105.047100  0.595
1993 Appel LF, Prout M, Abu-Shumays R, Hammonds A, Garbe JC, Fristrom D, Fristrom J. The Drosophila Stubble-stubbloid gene encodes an apparent transmembrane serine protease required for epithelial morphogenesis. Proceedings of the National Academy of Sciences of the United States of America. 90: 4937-41. PMID 7685111 DOI: 10.1073/Pnas.90.11.4937  0.609
1990 Moore JT, Fristrom D, Hammonds AS, Fristrom JW. Characterization of IMP-E3, a gene active during imaginal disc morphogenesis in Drosophila melanogaster. Developmental Genetics. 11: 299-309. PMID 2128624 DOI: 10.1002/Dvg.1020110409  0.614
1986 Natzle JE, Hammonds AS, Fristrom JW. Isolation of genes active during hormone-induced morphogenesis in Drosophila imaginal discs. The Journal of Biological Chemistry. 261: 5575-83. PMID 3007512  0.602
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