Dylan Girodat
Affiliations: | 2018-2022 | Theoretical Division | Los Alamos National Laboratory, Los Alamos, NM, United States |
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"Dylan Girodat"
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| Alejo JL, Girodat D, Hammerling MJ, et al. (2024) Alternate conformational trajectories in ribosome translocation. Plos Computational Biology. 20: e1012319 |
| Chowdhury AR, Sapkota D, Girodat D. (2024) Conformational changes of ribosomes during translation elongation resolved by molecular dynamics simulations. Current Opinion in Structural Biology. 86: 102804 |
| Girodat D, Wieden HJ, Blanchard SC, et al. (2023) Geometric alignment of aminoacyl-tRNA relative to catalytic centers of the ribosome underpins accurate mRNA decoding. Nature Communications. 14: 5582 |
| Nishima W, Girodat D, Holm M, et al. (2022) Hyper-swivel head domain motions are required for complete mRNA-tRNA translocation and ribosome resetting. Nucleic Acids Research |
| Girodat D, Pati AK, Terry DS, et al. (2020) Quantitative comparison between sub-millisecond time resolution single-molecule FRET measurements and 10-second molecular simulations of a biosensor protein. Plos Computational Biology. 16: e1008293 |
| Girodat D, Blanchard SC, Wieden HJ, et al. (2020) Elongation Factor-Tu switch I is a gate for aminoacyl-tRNA selection. Journal of Molecular Biology |
| Morse JC, Girodat D, Burnett BJ, et al. (2020) Elongation factor-Tu can repetitively engage aminoacyl-tRNA within the ribosome during the proofreading stage of tRNA selection. Proceedings of the National Academy of Sciences of the United States of America |
| Girodat D, Mercier E, Gzyl KE, et al. (2019) Elongation Factor Tu's Nucleotide Binding is Governed by a Thermodynamic Landscape Unique Among Bacterial Translation Factors. Journal of the American Chemical Society |
| Chao Y, Li L, Girodat D, et al. (2017) In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways. Molecular Cell. 65: 39-51 |