Rachel Karchin, Ph.D.
Affiliations: | 2003 | University of California, Santa Cruz, Santa Cruz, CA, United States |
Area:
Computer Science, Molecular BiologyGoogle:
"Rachel Karchin"Mean distance: (not calculated yet)
Parents
Sign in to add mentor| Kevin Karplus | grad student | 2003 | UC Santa Cruz | |
| (Evaluating local structure alphabets for protein structure prediction.) | ||||
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Publications
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| Noë M, Niknafs N, Fischer CG, et al. (2020) Genomic characterization of malignant progression in neoplastic pancreatic cysts. Nature Communications. 11: 4085 |
| Douville C, Cohen JD, Ptak J, et al. (2020) Assessing aneuploidy with repetitive element sequencing. Proceedings of the National Academy of Sciences of the United States of America |
| Shao XM, Bhattacharya R, Huang J, et al. (2019) High-throughput prediction of MHC class I and class II neoantigens with MHCnuggets. Cancer Immunology Research |
| Niknafs N, Zhong Y, Moral JA, et al. (2019) Characterization of genetic subclonal evolution in pancreatic cancer mouse models. Nature Communications. 10: 5435 |
| Kasak L, Bakolitsa C, Hu Z, et al. (2019) Assessing Computational Predictions of the Phenotypic Effect of Cystathionine-beta-Synthase Variants. Human Mutation |
| Tokheim C, Karchin R. (2019) CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Systems |
| Fischer CG, Guthrie VB, Braxton AM, et al. (2019) Intraductal Papillary Mucinous Neoplasms Arise from Multiple Independent Clones, Each With Distinct Mutations. Gastroenterology |
| Kuboki Y, Fischer CG, Beleva Guthrie V, et al. (2018) Single-cell sequencing defines genetic heterogeneity in pancreatic cancer precursor lesions. The Journal of Pathology |
| Springer SU, Chen CH, Rodriguez Pena MDC, et al. (2018) Correction: Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy. Elife. 7 |
| Reiter JG, Makohon-Moore AP, Gerold JM, et al. (2018) Minimal functional driver gene heterogeneity among untreated metastases. Science (New York, N.Y.). 361: 1033-1037 |