Omar N. Demerdash, Ph.D.
Affiliations: | 2010 | University of Wisconsin, Madison, Madison, WI |
Area:
General Biophysics, Molecular BiologyGoogle:
"Omar Demerdash"Mean distance: (not calculated yet)
Parents
Sign in to add mentor| Julie C. Mitchell | grad student | 2010 | UW Madison | |
| (Modeling of protein function at the intra- and inter-protein level: Computational models for allostery hotspot and protein-binding prediction.) | ||||
| Teresa Head-Gordon | post-doc | 2013-2017 | UC Berkeley | |
| (Oakridge National Labs) | ||||
BETA: Related publications
See more...
Publications
|
You can help our author matching system! If you notice any publications incorrectly attributed to this author, please sign in and mark matches as correct or incorrect. |
| Hameedi MA, T Prates E, Garvin MR, et al. (2022) Structural and functional characterization of NEMO cleavage by SARS-CoV-2 3CLpro. Nature Communications. 13: 5285 |
| Hameedi MA, Prates ET, Garvin MR, et al. (2021) Structural and functional characterization of NEMO cleavage by SARS-CoV-2 3CLpro. Biorxiv : the Preprint Server For Biology |
| Mao Y, Loipersberger M, Horn PR, et al. (2021) From Intermolecular Interaction Energies and Observable Shifts to Component Contributions and Back Again: A Tale of Variational Energy Decomposition Analysis. Annual Review of Physical Chemistry |
| Aranha MP, Spooner C, Demerdash O, et al. (2020) Prediction of peptide binding to MHC using machine learning with sequence and structure-based feature sets. Biochimica Et Biophysica Acta. General Subjects. 129535 |
| Bortnov V, Tonelli M, Lee W, et al. (2019) Solution structure of human myeloid-derived growth factor suggests a conserved function in the endoplasmic reticulum. Nature Communications. 10: 5612 |
| Demerdash O, Shrestha UR, Petridis L, et al. (2019) Using Small-Angle Scattering Data and Parametric Machine Learning to Optimize Force Field Parameters for Intrinsically Disordered Proteins. Frontiers in Molecular Biosciences. 6: 64 |
| Das AK, Demerdash ON, Head-Gordon T. (2018) Improvements to the AMOEBA Force Field by Introducing Anisotropic Atomic Polarizability of the Water Molecule. Journal of Chemical Theory and Computation |
| Demerdash O, Mao Y, Liu T, et al. (2017) Assessing many-body contributions to intermolecular interactions of the AMOEBA force field using energy decomposition analysis of electronic structure calculations. The Journal of Chemical Physics. 147: 161721 |
| Demerdash O, Wang L, Head‐Gordon T. (2017) Advanced models for water simulations Wires Computational Molecular Science. 8 |
| Mao Y, Demerdash O, Head-Gordon M, et al. (2016) Assessing water-water and water-ion dimer interactions in the AMOEBA force field using energy decomposition analysis of electronic structure calculations. Journal of Chemical Theory and Computation |