David B. Bernstein
Affiliations: | Bioinformatics Program | Boston University, Boston, MA, United States |
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| Bernstein DB, Akkas B, Price MN, et al. (2023) Evaluating E. coli genome-scale metabolic model accuracy with high-throughput mutant fitness data. Molecular Systems Biology. e11566 |
| Jo C, Bernstein DB, Vaisman N, et al. (2023) Construction and Modeling of a Coculture Microplate for Real-Time Measurement of Microbial Interactions. Msystems. e0001721 |
| Ankrah NYD, Bernstein DB, Biggs M, et al. (2021) Enhancing Microbiome Research through Genome-Scale Metabolic Modeling. Msystems. 6: e0059921 |
| Dukovski I, Bajić D, Chacón JM, et al. (2021) A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS). Nature Protocols |
| Moyer D, Pacheco AR, Bernstein DB, et al. (2021) Stoichiometric Modeling of Artificial String Chemistries Reveals Constraints on Metabolic Network Structure. Journal of Molecular Evolution |
| Bernstein DB, Sulheim S, Almaas E, et al. (2021) Addressing uncertainty in genome-scale metabolic model reconstruction and analysis. Genome Biology. 22: 64 |
| Bernstein DB, Dewhirst FE, Segre D. (2019) Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiome. Elife. 8 |